Contig 003971:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011H09Sequence546003971 (2)ref|XP_009766456.1|5e-62PREDICTED: splicing factor 3B subunit 6-like protein [Nicotiana sylvestris]598003971 (2)ref|XP_009766456.1|8e-62PREDICTED: splicing factor 3B subunit 6-like protein [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF011H09-             GTCGCTGCCTTTCGTTCGTTCATCCTCAACATCGCCTTAACAACAATCGACTCGCATT
rJMFF011H09+            GTCGCTGCCTTTCGTTCGTTCATCCTCAACATCGCCTTAACAACAATCGACTCGCATT
                      ____________________________________________________________
consensus               GTCGCTGCCTTTCGTTCGTTCATCCTCAACATCGCCTTAACAACAATCGACTCGCATT
 
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JMFF011H09-           TCTCTCGGAAAATATGGCTGCCATAAGTCTACGGAAGGGAAACACGCGTCTGCCGCCGGA
rJMFF011H09+          TCTCTCGGAAAATATGGCTGCCATAAGTCTACGGAAGGGAAACACGCGTCTGCCGCCGGA
                      ____________________________________________________________
consensus             TCTCTCGGAAAATATGGCTGCCATAAGTCTACGGAAGGGAAACACGCGTCTGCCGCCGGA
 
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JMFF011H09-           GGTGAACCGTGTGCTCTACGTCCGAAACTTGCCTTTCAACATCACCAGCGAGGAGATGTA
rJMFF011H09+          GGTGAACCGTGTGCTCTACGTCCGAAACTTGCCTTTCAACATCACCAGCGAGGAGATGTA
                      ____________________________________________________________
consensus             GGTGAACCGTGTGCTCTACGTCCGAAACTTGCCTTTCAACATCACCAGCGAGGAGATGTA
 
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JMFF011H09-           CGACATCTTCGGCAAGTACGGAGCCATCAGGCAGATCCGAATCGGCACCAACAAGGACAC
rJMFF011H09+          CGACATCTTCGGCAAGTACGGAGCCATCAGGCAGATCCGAATCGGCACCAACAAGGACAC
                      ____________________________________________________________
consensus             CGACATCTTCGGCAAGTACGGAGCCATCAGGCAGATCCGAATCGGCACCAACAAGGACAC
 
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JMFF011H09-           CCGCGGCACCGCCTTTGTCGTCTACGAGGATATCTACGACGCCAAGACCGCCGTTGACCA
rJMFF011H09+          CCGCGGCACCGCCTTTGTCGTCTACGAGGATATCTACGACGCCAAGACCGCCGTTGACCA
                      ____________________________________________________________
consensus             CCGCGGCACCGCCTTTGTCGTCTACGAGGATATCTACGACGCCAAGACCGCCGTTGACCA
 
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JMFF011H09-           TCTCTCCGGCTTCAACGTCGCCAATAGGTACTTGATAGTGTTGTACTATCAGCAAGCCAA
rJMFF011H09+          TCTCTCCGGCTTCAACGTCGCCAATAGGTACTTGATAGTGTTGTACTATCAGCAAGCCAA
                      ____________________________________________________________
consensus             TCTCTCCGGCTTCAACGTCGCCAATAGGTACTTGATAGTGTTGTACTATCAGCAAGCCAA
 
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JMFF011H09-           GATGAGCAAGAAGTTCGACCAGAAGAAAAAGGAGGAAGAGATTCAGAAGCTTCAGGAGAA
rJMFF011H09+          GATGAGCAAGAAGTTCGACCAGAAGAAAAAGGAGGAAGAGATTCAGAAGCTTCAGGAGAA
                      ____________________________________________________________
consensus             GATGAGCAAGAAGTTCGACCAGAAGAAAAAGGAGGAAGAGATTCAGAAGCTTCAGGAGAA
 
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JMFF011H09-           GTATGGGATTCCCAGCAAAGATAAGTAGTTATATTGTAAACCCTAATTTTTCTCAATGTC
rJMFF011H09+          GTATGGGATTCCCAGCAAAGATAAGTAGTTATATTGTAAACCCTAATTTTTCTCAATGTC
                      ____________________________________________________________
consensus             GTATGGGATTCCCAGCAAAGATAAGTAGTTATATTGTAAACCCTAATTTTTCTCAATGTC
 
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JMFF011H09-           CAGTGCTTTTCACTATTATGTGTAGAATTGTAGCTAAACTGTAACTGGCAGTAAAACAGA
rJMFF011H09+          CAGTGCTTTTCACTATTATGTGTAGAATTGTAGCTAAACTGTAACTGGCAGTAAAACAGA
                      ____________________________________________________________
consensus             CAGTGCTTTTCACTATTATGTGTAGAATTGTAGCTAAACTGTAACTGGCAGTAAAACAGA
 
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JMFF011H09-           AGTGAGGA                                                    
rJMFF011H09+          AGTGAGGAAAGCCAAAGATTGGCTTTGATATTGGTACTTTGTGATGCTGAATTAGCAGGG
                      ____________________________________________________________
consensus             AGTGAGGAAAGCCAAAGATTGGCTTTGATATTGGTACTTTGTGATGCTGAATTAGCAGGG