| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010M22 | Sequence | 549 | 003500 (4) | ref|XP_009757642.1| | 2e-08 | PREDICTED: transcription factor bHLH130-like [Nicotiana sylvestris] | 643 | 003968 (5) | emb|CDP07732.1| | 4e-62 | unnamed protein product [Coffea canephora] |
| JMSF001D20 | Sequence | 357 | 003500 (4) | 772 | 003968 (5) | ref|XP_004229606.1| | 1e-62 | PREDICTED: transcription factor bHLH130-like [Solanum lycopersicum] | |||
| JMSF006I18 | Sequence | 412 | 003500 (4) | ref|XP_009757642.1| | 1e-09 | PREDICTED: transcription factor bHLH130-like [Nicotiana sylvestris] | 121 | 003968 (5) | ref|XP_009757642.1| | 6e-05 | PREDICTED: transcription factor bHLH130-like [Nicotiana sylvestris] |
| JMSF006I20 | Sequence | 367 | 010574 (10) | ref|XP_009765831.1| | 2e-28 | PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Nicotiana | 502 | 003968 (5) | ref|XP_004229606.1| | 4e-47 | PREDICTED: transcription factor bHLH130-like [Solanum lycopersicum] |
| JMSF014G20 | Sequence | 239 | 003500 (4) | 705 | 003968 (5) | ref|XP_004229606.1| | 1e-68 | PREDICTED: transcription factor bHLH130-like [Solanum lycopersicum] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF001D20+ GNTTGATGTTATGAGAGAGGGTGGAAAC
____________________________________________________________
consensus GNTTGATGTTATGAGAGAGGGTGGAAAC
. : . : . : . : . : . :
rJMSF001D20+ TATATAAAGGTAATGATGGTTATCCTCAAATGGTTTCAACAATCACATCAACTACTCATC
____________________________________________________________
consensus TATATAAAGGTAATGATGGTTATCCTCAAATGGTTTCAACAATCACATCAACTACTCATC
. : . : . : . : . : . :
rJMSF001D20+ TGCTCAGTCTTCCAGTTCAAACTTCATGCCCAGCATAGCAGAAAATGAATCTTGGAATGA
rJMSF014G20+ TTCAAACTTCATGCCCAGCATAGCAGAAAATGNATCTTGGAATNA
____________________________________________________________
consensus TGCTCAGTCTTCCAGTTCAAACTTCATGCCCAGCATAGCAGAAAATGAATCTTGGAATGA
. : . : . : . : . : . :
rJMSF001D20+ CTCTTCTTTCAATTGCTTAAAGAGGAGCAGAGATGGTGACTTCAAGATGTTATCTGCTCT
rJMSF014G20+ CTCTTCTTTCAATTGCTTNAAGAGGAGCAGAGATGGNGACTTCAAGATGTTNTCTGCTCT
rJMFF010M22+ AAGAGGAGCAGAGATGGTGACTTCAAGATGTTATCTGCTCT
____________________________________________________________
consensus CTCTTCTTTCAATTGCTTAAAGAGGAGCAGAGATGGTGACTTCAAGATGTTATCTGCTCT
. : . : . : . : . : . :
rJMSF001D20+ CAATGGAATCGAATCTCAGAACGGGGGCGAACGAAGGAACTGTACGCCCGGTTTAACCCA
rJMSF014G20+ CAATGGAATCGAATCTCAGAACGGGGGCGANCGAAGGAACTGTACGCCCGGTTTAACCCN
rJMFF010M22+ CAATGGAATCGAATCTCAGAACGGGGGCGAACGAAGGAACTGTACGCCCGGTTTAACCCA
____________________________________________________________
consensus CAATGGAATCGAATCTCAGAACGGGGGCGAACGAAGGAACTGTACGCCCGGTTTAACCCA
. : . : . : . : . : . :
rJMSF001D20+ CCACCTGAGCTTGCCTAGCTCCGTTGAGATAGAGAAGTATTTGCATTTTCAGCAAGACGC
rJMSF014G20+ CCACCTGAGCTTGCCTAGCTCCGTTGAGATAGAGAAGTATTTGCATTTTCAGCAAGACGC
rJMSF006I20+ TCCGTTGAGATAGAGAAGTATTTGCATTTTCAGCAAGACGC
rJMFF010M22+ CCACCTGAGCTTGCCTAGCTCCGTTGAGATAGAGAAGTATTTGCATTTTCAGCAAGACGC
____________________________________________________________
consensus CCACCTGAGCTTGCCTAGCTCCGTTGAGATAGAGAAGTATTTGCATTTTCAGCAAGACGC
. : . : . : . : . : . :
rJMSF001D20+ GGTTCCATGTAAA-TCCGTGTCAAACGAGGCTGCGCCACTCACCCAAGAAGCATTGCGGA
rJMSF014G20+ GGTTCCATGTAAAATCCGTGCCAAACGAGGCTGCGCCACTCACCCAAGAAGCATTGCGGA
rJMSF006I20+ GGTTCCATGTAAATTCCGTGCCAAACGAGGCTGCGCCACTCACCCAAGAAGCATTGCGGA
rJMFF010M22+ GGTTCCATGTAAAATCCGTGCCAAACGAGGCTGCGCCACTCACCCAAGAAGCATTGCGGA
____________________________________________________________
consensus GGTTCCATGTAAAATCCGTGCCAAACGAGGCTGCGCCACTCACCCAAGAAGCATTGCGGA
. : . : . : . : . : . :
rJMSF001D20+ GAGGAACCGACGGACCAGGATTAGCGAAAGAATGAAGAAATTGCAAGAGCTATTCCCAAA
rJMSF014G20+ GAGGAACCGNCGGACCAGGATTAGCGAAAGAATGAAGAAATTGCAAGAGCTATTCCCAAA
rJMSF006I20+ GAGGAACCGACGGACCAGGATTAGCGAAAGAATGAAGAAATTGCAAGANCTATTCCCAAA
rJMFF010M22+ GAGGAACCGACGGACCAGGATTAGCGAAAGAATGAAGAAATTGCAAGAGCTATTCCCAAA
____________________________________________________________
consensus GAGGAACCGACGGACCAGGATTAGCGAAAGAATGAAGAAATTGCAAGAGCTATTCCCAAA
. : . : . : . : . : . :
rJMSF001D20+ GATGGACAAGCAAACAAGCACAGCAGATATGTTAGACTGGGCAGTTGATCACATTAAAGA
rJMSF014G20+ GATGGCCAAGCAAACNAGCNCAGCAGATATGTTAGACTGGGCAGTTGATCNCATTAAAGA
rJMSF006I20+ GATGGACAAGCAAACAAGCACAGCAGATATGTTAGACTGGGCAGTTGATCACATTAAAGA
rJMSF006I18+ GGACAAGCAAACAAGCNCAGCAGATATGTTAGACTGNNCAGTTGATCACTTTAANGA
rJMFF010M22+ GATGGACAAGCAAACAAGCACAGCAGATATGTTAGACTGGGCAGTTGATCACATTAAAGA
____________________________________________________________
consensus GATGGACAAGCAAACAAGCACAGCAGATATGTTAGACTGGGCAGTTGATCACATTAAAGA
. : . : . : . : . : . :
rJMSF001D20+ ACTTCAGAAACAAGTTCAGATTCTCACAGATAAAAAGGCGAAATGTACGTGTTCTAGTGA
rJMSF014G20+ NCTTCAGAAACANGTTCAGATTCTCACAGATAAAAAGGCGAAATGTACGTGTTCTAGTGA
rJMSF006I20+ ACTTCAGAAACAAGTTCAGATTCTCACAGATAAAAAGGCGAAATGTACGTGTTCTAGTGA
rJMSF006I18+ ACTTCNGNAACAAGTTCAGNTTNTCNCAGATAAAAAGG
rJMFF010M22+ ACTTCAGAAACAAGTTCAGATTCTCACAGATAAAAAGGCGAAATGTACGTGTTCTAGTGA
____________________________________________________________
consensus ACTTCAGAAACAAGTTCAGATTCTCACAGATAAAAAGGCGAAATGTACGTGTTCTAGTGA
. : . : . : . : . : . :
rJMSF001D20+ AGCTCAAAAGGGTGGAATGCTATAAGGGTGGCTTTGATGTACAGATAATAAAACTTAAAA
rJMSF014G20+ AGCTCAAAAGGGTGGAATGCTATAAGGGTGGCTTTGATGTACAGATAATAAAACTTAAAA
rJMSF006I20+ AGCTCAAAAGGGTGGAATGCTATAAGGGTGGCTTTGATGTACAGATAATAAAACTTAAAA
rJMFF010M22+ AGCTCAAAAGGGTGGAATGCTATAAGGGTGGCTTTGATGTACAGATAATAAAACTTAAAA
____________________________________________________________
consensus AGCTCAAAAGGGTGGAATGCTATAAGGGTGGCTTTGATGTACAGATAATAAAACTTAAAA
. : . : . : . : . : . :
rJMSF001D20+ GTAGGTGCAGATGTAGATGGAAGGGGGAAAAGAGGAGAGAAAAGAGTGAAGCTAAACTAA
rJMSF014G20+ GTAGGTGCAGATGTAGNTGGAAGGGGGAAAAGAGGAGAGAAAAGAGTGAAGCTAAACTAA
rJMSF006I20+ GTAGGTGCAGATGTAGATGGAAGGGGGAAAAGAGGAGAGAAAAGAGTGAAGCTAAACTAA
rJMFF010M22+ GTAGGTGCAGATGTAGATGGAAGGGGGAAAAGAGGAGAGAAAAGAGTGAAGCTAAACTAA
____________________________________________________________
consensus GTAGGTGCAGATGTAGATGGAAGGGGGAAAAGAGGAGAGAAAAGAGTGAAGCTAAACTAA
. : . : . : . : . : . :
rJMSF001D20+ CTCCTTGTTTGCCATCATTGAAGCATTGTATTTTGGGTAGGTAGATCAGAAAGCAAATGT
rJMSF014G20+ CTCCTTGTTTGCCATCATTGANGCNTTGTATTNTGGGTAGGTAGATCAGAAAGCNAATGT
rJMSF006I20+ CTCCTTGTTTGCCATCATTGAAGCATTGTATTTTGGGTAGGTAGATCAGAAAGCAAATGT
rJMFF010M22+ CTCCTTGTTTGCCATCATTGAAGCATTGTATTTTGGGTAGGTAGATCAGAAAGCAAATGT
____________________________________________________________
consensus CTCCTTGTTTGCCATCATTGAAGCATTGTATTTTGGGTAGGTAGATCAGAAAGCAAATGT
. : . : . : . : . : . :
rJMSF001D20+ AGTTTCTAATGTATTTTCAATATTG
rJMSF014G20+ AGTTTCTAATGTATTTTCAATATTGGGTAACATTTATCTCACATGTATCAATCACCATCA
rJMSF006I20+ AGTTTCTAATGTATTTTCAATATTGGGTA
rJMFF010M22+ AGTTTCTAATGTATTTTCAATATTGGGTAACATTTATCTCACATGTATCAATCACCATCA
____________________________________________________________
consensus AGTTTCTAATGTATTTTCAATATTGGGTAACATTTATCTCACATGTATCAATCACCATCA