Contig 003966:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF010K06-                         GAATAATAATAATAATAAAGAAAAATAATAAAAACAACGTTTCTTT
JMFF011M12-                  ATATTCAGAATAATAATAATAATAAAGAAAAATAATAAAAACAACGTTTCTTT
                      ____________________________________________________________
consensus                    ATATTCAGAATAATAATAATAATAAAGAAAAATAATAAAAACAACGTTTCTTT
 
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JMFF010K06-           GAGATCATAAGCAGATTCCCCTTTGGATTAATCTTTGTTTATGATCTCAAAAACAGTTTT
JMFF011M12-           GAGATCATAAGCAGATTCCCCTTTGGATTAATCTTTGTTTATGATCTCAAAAACAGTTTT
                      ____________________________________________________________
consensus             GAGATCATAAGCAGATTCCCCTTTGGATTAATCTTTGTTTATGATCTCAAAAACAGTTTT
 
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JMFF010K06-           AGCTTAGCTTGATCGCCATGGCAGCAGAAATGCGATTGTCATTGTTGATTGTGTTGGTTG
JMFF011M12-           AGCTTAGCTTGATCGCCATGGCAGCAGAAATGCGATTGTCATTGTTGATTGTGTTGGTTG
                      ____________________________________________________________
consensus             AGCTTAGCTTGATCGCCATGGCAGCAGAAATGCGATTGTCATTGTTGATTGTGTTGGTTG
 
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JMFF010K06-           TAGCGTTGCCCTGCGTATTTGCCCATAAGAGTGAATGGAAGGAAGCTCATGCCACCTATT
JMFF011M12-           TAGCGTTGCCCTGCGTATTTGCCCATAAGAGTGAATGGAAGGAAGCTCATGCCACCTATT
rJMFF010K06+                                CCATAAGAGTGAATGGAAGGAAGCTCATGCCACCTATT
                      ____________________________________________________________
consensus             TAGCGTTGCCCTGCGTATTTGCCCATAAGAGTGAATGGAAGGAAGCTCATGCCACCTATT
 
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JMFF010K06-           ATGGCGCCCCTGAGGGCACCATCGGCGGAGCTTGTGGCTTCGAAGAATACAAACAAATCT
JMFF011M12-           ATGGCGCCCCTGAGGGCACCATCGGCGGAGCTTGTGGCTTCGAAGAATACAAACAAATCT
rJMFF011M12+                                                   GAAGAATACAAACAAATCT
rJMFF010K06+          ATGGCGCCCNTGAGGGCACCATCGGCGGAGCTTGTGGCTTCGAAGAATACAAACAAATCT
                      ____________________________________________________________
consensus             ATGGCGCCCCTGAGGGCACCATCGGCGGAGCTTGTGGCTTCGAAGAATACAAACAAATCT
 
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JMFF010K06-           ATTCCCCATACACCGCAGCTCTGAGCCCAGCATTATACAACGAAGCAGAAAGCTGCGGCG
JMFF011M12-           ATTCCCCATACACCGCAGCTCTGAGCCCAGCATTATACAACGAAGCAGAAAGCTGCGGCG
rJMFF011M12+          ATTCCCCATACACCGCAGCTCTGAGCCCAGCATTATACAACGAAGCAGAAAGCTGCGGCG
rJMFF010K06+          ATTCCCCATACACCGCAGCTCTGAGCCCAGCATTATACAACGAAGCAGAAAGCTGCGGCG
                      ____________________________________________________________
consensus             ATTCCCCATACACCGCAGCTCTGAGCCCAGCATTATACAACGAAGCAGAAAGCTGCGGCG
 
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JMFF010K06-           CCTGCTTCGAAATAAAATGCGTAGAATCCGAGTTTTGCAAGAAAGGCCACAAAACCCGTG
JMFF011M12-           CCTGCTTCGAAATAAAATGCGTAGAATCCGAGTTTTGCAAGAAAGGCCACAAACCCCGTG
rJMFF011M12+          CCTGCTTCGAAATAAAATGCGTAGAATCCGAGTTTTGCAAGAAAGGCCACAAA-CCCGTG
rJMFF010K06+          CCTGCTTCGAAATAAAATGCGTAGAATCCGAGTTTTGCAAGAAAGGCCACAAA-CCCGTG
                      ____________________________________________________________
consensus             CCTGCTTCGAAATAAAATGCGTAGAATCCGAGTTTTGCAAGAAAGGCCACAAA-CCCGTG
 
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JMFF010K06-           GAGGTCACCGTCACGGATTCGTGCCCCGCGAGCGACGCCCGCTGCAGCCCGCCGCACGTA
JMFF011M12-           GAGGTCACCGTCACGGATTCGTGCCCCGCGAGCGACGCCCGCTGCAGCCCGCCGCACGTA
rJMFF011M12+          GAGGTCACCGTCACGGATTCGTGCCCCGCGAGCGACGCCCGCTGCAGCCCGCCGCACGTA
rJMFF010K06+          GAGGTCACCGTCACGGATTCGTGCCCCGCGAGCGACGCCCGCTGCAGCCCGCCGCACGTA
                      ____________________________________________________________
consensus             GAGGTCACCGTCACGGATTCGTGCCCCGCGAGCGACGCCCGCTGCAGCCCGCCGCACGTA
 
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JMFF010K06-           CATTTCGACTTGTCCCAGCCCGCGTTTCACGAGATCGCGGAGCACGA             
JMFF011M12-           CATTTCGACTTGTCCCAGCCCGCGTTTCACGAGATCGCGGAGCACGAA            
rJMFF011M12+          CATTTCGACTTGTCCCAGCCCGCGTTTCACGAGATCGCGGAGCACGAAGGCGGCGTGGTT
rJMFF010K06+          CATTTCGACTTGTCCCAGCCCGCGTTTCACGAGATCGCGGAGCACGAAGGCGGCGTGGTT
                      ____________________________________________________________
consensus             CATTTCGACTTGTCCCAGCCCGCGTTTCACGAGATCGCGGAGCACGAAGGCGGCGTGGTT
 
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rJMFF011M12+          CCGGTGAAGTACCGTAAGGTTCAGTGCAAGAGAAAGGGCGGGGTGAAGTTTACGATCACG
rJMFF010K06+          CCGGTGAAGTACCGTAAGGTTCAGTGCAAGAGAAAGGGCGGGGTGAAGTTTACGATCACG
                      ____________________________________________________________
consensus             CCGGTGAAGTACCGTAAGGTTCAGTGCAAGAGAAAGGGCGGGGTGAAGTTTACGATCACG
 
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rJMFF011M12+          GGGAACCCTAATTTTAACTTGGTGACCGTGACGAATGTTGCCGGGGGCGGAGACCTTGAG
rJMFF010K06+          GGGAACCCTAATTTTAACTTGGTGACCGTGACGAATGTTGCCGGGGGCGGAGACCTTGAG
                      ____________________________________________________________
consensus             GGGAACCCTAATTTTAACTTGGTGACCGTGACGAATGTTGCCGGGGGCGGAGACCTTGAG
 
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rJMFF011M12+          AAGGTGGAGGTGAAAGCTGATGGGGTGAAAGAATGGATAGAGATGAAACGCAACTGGGGT
rJMFF010K06+          AAGGTGGAGGTGAAAGCTGATGGGGTGAAAGAATGGATAGAGATGAAACGCAACTGGGGT
                      ____________________________________________________________
consensus             AAGGTGGAGGTGAAAGCTGATGGGGTGAAAGAATGGATAGAGATGAAACGCAACTGGGGT
 
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rJMFF011M12+          GAGAAATGGGAGACCAATATAGATTTGTCTGGGAAATCTCTGACTTTTAGGATCACTACA
rJMFF010K06+          GAGAAATGGGAGACCAATATAGATTTGTCTGGGAAATCTNTGACTTTTAGGATCANTACA
                      ____________________________________________________________
consensus             GAGAAATGGGAGACCAATATAGATTTGTCTGGGAAATCTCTGACTTTTAGGATCACTACA
 
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rJMFF011M12+          TGCGAAGGGCAAGTAGCTACTTCCAAGCATGTCGCCCCTGAGTCGTGGCAGTACGGCCAG
rJMFF010K06+          TGCGAAGGGCAAGTAGCTACTTCCAAGCATGTCGCCCCTGAGTCGTGGCAGTACGGCCAG
                      ____________________________________________________________
consensus             TGCGAAGGGCAAGTAGCTACTTCCAAGCATGTCGCCCCTGAGTCGTGGCAGTACGGCCAG
 
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rJMFF011M12+          ACATTCGAAGGC                                                
rJMFF010K06+          ACATTCGAAGGCAAAAACGTTTGATTCAACTCAACACAACACAATCTTTTGGTTTTTGTT
                      ____________________________________________________________
consensus             ACATTCGAAGGCAAAAACGTTTGATTCAACTCAACACAACACAATCTTTTGGTTTTTGTT
 
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rJMFF010K06+          TTGCACATGCGCTACCTTAGTTGTAAATTGTAAATGCCGTCGGGCAGTGTTGAAGTAATG
                      ____________________________________________________________
consensus             TTGCACATGCGCTACCTTAGTTGTAAATTGTAAATGCCGTCGGGCAGTGTTGAAGTAATG