Contig 003959:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009C03Sequence551003959 (4)ref|XP_009603301.1|6e-89PREDICTED: pleckstrin homology domain-containing protein 1-like [Nicotiana tome627003959 (4)ref|XP_009603301.1|1e-88PREDICTED: pleckstrin homology domain-containing protein 1-like [Nicotiana tome
JMFF033M08Sequence581003959 (4)ref|XP_009603301.1|1e-88PREDICTED: pleckstrin homology domain-containing protein 1-like [Nicotiana tome618003959 (4)ref|XP_009603301.1|1e-88PREDICTED: pleckstrin homology domain-containing protein 1-like [Nicotiana tome

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M08-                                            CACACGAGATTCCATTGAAGGGCCGTC
JMFF009C03-                                            CACACGAGATTCCATTGAAGGGCCGTC
rJMFF033M08+                                           CACACGAGATTCCATTGAAGGGCCGTC
rJMFF009C03+                                           CACACGAGATTCCATTGAAGGGCCGTC
                      ____________________________________________________________
consensus                                              CACACGAGATTCCATTGAAGGGCCGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M08-           ATGGCGAGCCTGTGGCAAGCGGTGATGGGCTCCGGGCAGTCGTCGGCGTCGAGCGAGGAC
JMFF009C03-           ATGGCGAGCCTGTGGCAAGCGGTGATGGGCTCCGGGCAGTCGTCGGCGTCGAGCGAGGAC
rJMFF033M08+          ATGGCGAGCCTGTGGCAAGCGGTGATGGGCTCCGGGCAGTCGTCGGCGTCGAGCGAGGAC
rJMFF009C03+          ATGGCGAGCCTGTGGCAAGCGGTGATGGGCTCCGGGCAGTCGTCGGCGTCGAGCGAGGAC
                      ____________________________________________________________
consensus             ATGGCGAGCCTGTGGCAAGCGGTGATGGGCTCCGGGCAGTCGTCGGCGTCGAGCGAGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M08-           TACGACGGGGTGCAGTTCTGGTCGAGCCCTGAGCGGACCGGGTGGCTGACGAAGCAGGGC
JMFF009C03-           TACGACGGGGTGCAGTTCTGGTCGAGCCCTGAGCGGACCGGGTGGCTGACGAAGCAGGGC
rJMFF033M08+          TACGACGGGGTGCAGTTCTGGTCGAGCCCTGAGCGGACCGGGTGGCTGACGAAGCAGGGC
rJMFF009C03+          TACGACGGGGTGCAGTTCTGGTCGAGCCCTGAGCGGACCGGGTGGCTGACGAAGCAGGGC
                      ____________________________________________________________
consensus             TACGACGGGGTGCAGTTCTGGTCGAGCCCTGAGCGGACCGGGTGGCTGACGAAGCAGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M08-           GAGTACATCAAGACGTGGCGGCGCCGCTGGTTTGTGCTCAAGCAAGGGAAGCTCTTCTGG
JMFF009C03-           GAGTACATCAAGACGTGGCGGCGCCGCTGGTTTGTGCTCAAGCAAGGGAAGCTCTTCTGG
rJMFF033M08+          GAGTACATCAAGACGTGGCGGCGCCGCTGGTTTGTGCTCAAGCAAGGGAAGCTCTTCTGG
rJMFF009C03+          GAGTACATCAAGACGTGGCGGCGCCGCTGGTTTGTGCTCAAGCAAGGGAAGCTCTTCTGG
                      ____________________________________________________________
consensus             GAGTACATCAAGACGTGGCGGCGCCGCTGGTTTGTGCTCAAGCAAGGGAAGCTCTTCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M08-           TTCAAGGAGTCCAACGTCACCCGCGGATCGCGCCCCCGCGGCGTCATCCCCGTCGCCACT
JMFF009C03-           TTCAAGGAGTCCAACGTCACCCGCGGATCGCGCCCCCGCGGCGTCATCCCCGTCGCCACT
rJMFF033M08+          TTCAAGGAGTCCAACGTCACCCGCGGATCGCGCCCCCGCGGCGTCATCCCCGTCGCCACT
rJMFF009C03+          TTCAAGGAGTCCAACGTCACCCGCGGATCGCGCCCCCGCGGCGTCATCCCCGTCGCCACT
                      ____________________________________________________________
consensus             TTCAAGGAGTCCAACGTCACCCGCGGATCGCGCCCCCGCGGCGTCATCCCCGTCGCCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M08-           TGCCTCACAGTGAAGGGCGCCGAGGACGTGCTGAACAAGCAGTTCGCCTTCGAGCTCTCC
JMFF009C03-           TGCCTCACAGTGAAGGGCGCCGAGGACGTGCTGAACAAGCAGTTCGCCTTCGAGCTCTCC
rJMFF033M08+          TGCCTCACAGTGAAGGGCGCCGAGGACGTGCTGAACAAGCAGTTCGCCTTCGAGCTCTCC
rJMFF009C03+          TGCCTCACAGTGAAGGGCGCCGAGGACGTGCTGAACAAGCAGTTCGCCTTCGAGCTCTCC
                      ____________________________________________________________
consensus             TGCCTCACAGTGAAGGGCGCCGAGGACGTGCTGAACAAGCAGTTCGCCTTCGAGCTCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M08-           ACCCGCGCCGACACCATGTACTTCATCGCCGATTCCGAGAAGGAGAAGGAGGACTGGATC
JMFF009C03-           ACCCGCGCCGACACCATGTACTTCATCGCCGATTCCGAGAAGGAGAAGGAGGACTGGATC
rJMFF033M08+          ACCCGCGCCGACACCATGTACTTCATCGCCGATTCCGAGAAGGAGAAGGAGGACTGGATC
rJMFF009C03+          ACCCGCGCCGACACCATGTACTTCATCGCCGATTCCGAGAAGGAGAAGGAGGACTGGATC
                      ____________________________________________________________
consensus             ACCCGCGCCGACACCATGTACTTCATCGCCGATTCCGAGAAGGAGAAGGAGGACTGGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M08-           AATTCCATCGGACGATCCATAGTTCAGCACTCCAG                         
JMFF009C03-           AATTCCATCGGACGATCCATAGTTCAGCACTCCAGGTCAGTTACTGATAACGAGATCCTC
rJMFF033M08+          AATTCCATCGGACGATCCATAGTTCAGCACTCCAGGTCAGTTACTGATAACGAGATCCTC
rJMFF009C03+          AATTCCATCGGACGATCCATAGTTCAGCACTCCAGGTCAGTTACTGATAACGAGATCCTC
                      ____________________________________________________________
consensus             AATTCCATCGGACGATCCATAGTTCAGCACTCCAGGTCAGTTACTGATAACGAGATCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF009C03-           GATTACGATAGCCGCAAATAAATTCAATTTTTGTTTTTCAAAATCCTGTTTGTTTACCTA
rJMFF033M08+          GATTACGATAGCCGCAAATAAATTCAATTTTTGTTTTTCAAAATCCTGTTTGTTTACCTA
rJMFF009C03+          GATTACGATAGCCGCAAATAAATTCAATTTTTGTTTTTCAAAATCCTGTTTGTTTACCTA
                      ____________________________________________________________
consensus             GATTACGATAGCCGCAAATAAATTCAATTTTTGTTTTTCAAAATCCTGTTTGTTTACCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF009C03-           ATCGCGCTTCTTCCTTCATCTTTGTTTATTTTATTTGGAGATTG                
rJMFF033M08+          ATCGCGCTTCTTCCTTCATCTTTGTTTATTTTATTTGGAGATTGGAATTGCTTCTCTTCT
rJMFF009C03+          ATCGCGCTTCTTCCTTCATCTTTGTTTATTTTATTTGGAGATTGGAATTGCTTCTCTTCT
                      ____________________________________________________________
consensus             ATCGCGCTTCTTCCTTCATCTTTGTTTATTTTATTTGGAGATTGGAATTGCTTCTCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M08+          TTTGCTTCTATGTGTATTTATGGTTTGCTATGGAAGTTGTAAGTATCGGAT         
rJMFF009C03+          TTTGCTTCTATGTGTATTTATGATTTGCTATGGAAGTTGTAAGTATCGGATGAAACAGAA
                      ____________________________________________________________
consensus             TTTGCTTCTATGTGTATTTATGGTTTGCTATGGAAGTTGTAAGTATCGGATGAAACAGAA