Contig 003958:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008O03Sequence623005945 (4)ref|XP_009778271.1|3e-25PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]708003958 (6)ref|XP_009629097.1|5e-59PREDICTED: autophagy-related protein 18a [Nicotiana tomentosiformis]
JMFF017G08Sequence539005945 (4)emb|CAN67661.1|4e-18hypothetical protein VITISV_044410 [Vitis vinifera]754003958 (6)ref|XP_009778271.1|4e-116PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]
JMFF026J17Sequence548005945 (4)ref|XP_006344646.1|7e-24PREDICTED: autophagy-related protein 18a-like [Solanum tuberosum]766003958 (6)ref|XP_009778271.1|2e-150PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]
JMSF023G11Sequence627003958 (6)ref|XP_009778271.1|2e-49PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]724008536 (3)ref|XP_009778271.1|5e-86PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]
JMSF024G11Sequence141003958 (6)357008536 (3)ref|XP_009629097.1|3e-53PREDICTED: autophagy-related protein 18a [Nicotiana tomentosiformis]
JMSF042M08Sequence702003958 (6)ref|XP_009778271.1|2e-56PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]736008536 (3)ref|XP_009778271.1|5e-86PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF024G11-                                GGTTGCCACTTGCCAGTTGNCACCGNCGCCACGNAATTC
JMSF023G11-                                GGTTGCCACTTGCCAGTTGCCACCGCCGCCACGCAATTC
JMSF042M08-                                GGTTGCCACTTGCCAGTTGCCACCGCCGCCACGCAATTC
                      ____________________________________________________________
consensus                                  GGTTGCCACTTGCCAGTTGCCACCGCCGCCACGCAATTC
 
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JMSF024G11-           CTCCATCGCCACCCCCATGANCTCTACTCTTCCTTCTTCTTCCCCCTGGCCTCCCCTTAA
JMSF023G11-           CTCCATCGCCACCCCCATGACCTCTACTCTTCCTTCTTCTTCCCCCTGGCCTCCCCTTAA
JMSF042M08-           CTCCATCGCCACCCCCATGACCTCTACTCTTCCTTCTTCTTCCCCCTGGCCTCCCCTTAA
                      ____________________________________________________________
consensus             CTCCATCGCCACCCCCATGACCTCTACTCTTCCTTCTTCTTCCCCCTGGCCTCCCCTTAA
 
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JMSF024G11-           NCCTACATCTCCCCCATTCATGGNTGACAATTCTGCTC                      
JMSF023G11-           CCCTACATCTCCCCCATTCATGGCTGACAATTCTGCTCCCGACGCCGACGACCGCTCCCC
JMSF042M08-           CCCTACATCTCCCCCATTCATGGCTGACAATTCTGCTCCCGACGCCGACGACCGCTCCCC
                      ____________________________________________________________
consensus             CCCTACATCTCCCCCATTCATGGCTGACAATTCTGCTCCCGACGCCGACGACCGCTCCCC
 
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JMSF023G11-           GCTCTCCGACCTCTCCGATATCTCATCCGCCGTCACGTCCGCAGCCGCCGCCGCCGCCGC
JMSF042M08-           GCTCTCCGACCTCTCCGATATCTCATCCGCCGTCACGTCCGCAGCCGCCGCCGCCGCCGC
                      ____________________________________________________________
consensus             GCTCTCCGACCTCTCCGATATCTCATCCGCCGTCACGTCCGCAGCCGCCGCCGCCGCCGC
 
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JMSF023G11-           CGCCGACGACGACCGGCGCTCCCAAACCTCACCACCGCTCACCACCGCAACTACACATAA
JMSF042M08-           CGCCGACGACGACCGGCGCTCCCAAACCTCACCACCGCTCACCACCGCAACTACACATAA
                      ____________________________________________________________
consensus             CGCCGACGACGACCGGCGCTCCCAAACCTCACCACCGCTCACCACCGCAACTACACATAA
 
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JMSF023G11-           TTCTAACCCTAACCCTGTTTCTCCACCCGTTGATTCCTTTCCCCCTTCCCTCCTCCACCT
JMSF042M08-           TTCTAACCCTAACCCTGTTTCTCCACCCGTTGATTCCTTTCCCCCTTCCCTCCTCCACCT
                      ____________________________________________________________
consensus             TTCTAACCCTAACCCTGTTTCTCCACCCGTTGATTCCTTTCCCCCTTCCCTCCTCCACCT
 
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JMSF023G11-           CTCCTTTAACCAGGACCACGGCTGCTTTGCTCTCGGGATCAATCGCGGCTTCCGAATCTA
JMSF042M08-           CTCCTTTAACCAGGACCACGGCTGCTTTGCTCTCGGGATCAATCGCGGCTTCCGAATCTA
                      ____________________________________________________________
consensus             CTCCTTTAACCAGGACCACGGCTGCTTTGCTCTCGGGATCAATCGCGGCTTCCGAATCTA
 
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JMSF023G11-           TAACTGCGATCCTTTCCGAGAGATTTTCCGCCGCGACTTCTCTAATACTGGCGGAGGCGG
JMSF042M08-           TAACTGCGATCCTTTCCGAGAGATTTTCCGCCGCGACTTCTCTAATACTGGCGGAGGCGG
                      ____________________________________________________________
consensus             TAACTGCGATCCTTTCCGAGAGATTTTCCGCCGCGACTTCTCTAATACTGGCGGAGGCGG
 
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JMSF023G11-           TGGAATTGGGGTAGTTCAGATGCTCTTCCGATGTAATATCCTAGCCCTAGTCGGTGGAGG
JMSF042M08-           TGGAATTGGGGTAGTTCAGATGCTCTTCCGATGTAATATCCTAGCCCTAGTCGGTGGAGG
rJMFF026J17+                                                                 GGAGG
                      ____________________________________________________________
consensus             TGGAATTGGGGTAGTTCAGATGCTCTTCCGATGTAATATCCTAGCCCTAGTCGGTGGAGG
 
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JMSF023G11-           TCCGGAGCCGCAGTATCCTATGAACAAAGTAATGATCTGGGACGATCACCAGTCCAGGTG
JMSF042M08-           TCCGGAGCCGCAGTATCCTATGAACAAAGTAATGATCTGGGACGATCACCAGTCCAGGTG
rJMFF026J17+          GCCGGAACCACAGTATCCTTTGAATAAGGTCATGATCTGGGACGATCATCAGTCCAGGTG
                      ____________________________________________________________
consensus             TCCGGAGCCGCAGTATCCTATGAACAAAGTAATGATCTGGGACGATCACCAGTCCAGGTG
 
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JMSF023G11-           CATCGGCGAGCTATCATTCCGGTCGGAGGTGAAGTCGGTCCGGC                
JMSF042M08-           CATCGGCGAGCTATCATTCCGGTCGGAGGTGAAGTCGGTCCGGCTCCGGAGGGACCGGAT
rJMFF026J17+          CATCGGAGAGCTATCCTTTCGCTCCGAGGTGAAGTCCGTCCGGCATCGGAGGGATAGAAT
                      ____________________________________________________________
consensus             CATCGGCGAGCTATCATTCCGGTCGGAGGTGAAGTCGGTCCGGCTTCGGAGGGATCGGAT
 
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JMSF042M08-           TGTGGTCGTTCTGGCGCANAAGATATTCGTATACAATTTCGCGGATTTGAAGCTGTT   
rJMFF026J17+          TGTGGTTGTTTTGGCGCAGAAGATATTTGTGTACAATTTCGCAGATTTGAAGTTGTTACA
                      ____________________________________________________________
consensus             TGTGGTTGTTTTGGCGCAGAAGATATTTGTGTACAATTTCGCGGATTTGAAGTTGTTACA
 
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rJMFF026J17+          CCAGATAGAGACTATGGTGAACCCGAAAGGATTGTGTGAGGTCTCGCAGGTGTCAGGGTC
                      ____________________________________________________________
consensus             CCAGATAGAGACTATGGTGAACCCGAAAGGATTGTGTGAGGTCTCGCAGGTGTCAGGGTC
 
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rJMFF026J17+          TATGGTGCTGGTTTGTCCGGGGCTGCAAAAGGGCCAGGTCAGGGTTGAACACTATGGCTC
rJMFF017G08+                        GTCCGGGGCTGCAAAAGGGCCAGGTCAGGGTTGAACACTATGGCTC
                      ____________________________________________________________
consensus             TATGGTGCTGGTTTGTCCGGGGCTGCAAAAGGGCCAGGTCAGGGTTGAACACTATGGCTC
 
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rJMFF026J17+          AAAGAGGACAAAATTTATAGCGGCTCACGATTCGAGGGTATCATCTTTTGCTCTAACAAA
rJMFF017G08+          AAAGAGGACAAAATTTATAGCGGCTCACGATTCGAGGGTATCATCTTTTGCTCTAACAAA
                      ____________________________________________________________
consensus             AAAGAGGACAAAATTTATAGCGGCTCACGATTCGAGGGTATCATCTTTTGCTCTAACAAA
 
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rJMFF026J17+          CGATGGGAAATTGCTTGCTACAGCAAGTAGTAAAGGGACTCTTGTGAGGGTGTTCAATAC
rJMFF017G08+          CGATGGGAAATTGCTTGCTACAGCAAGTAGTAAAGGGACTCTTGTGAGGGTGTTCAATAC
                      ____________________________________________________________
consensus             CGATGGGAAATTGCTTGCTACAGCAAGTAGTAAAGGGACTCTTGTGAGGGTGTTCAATAC
 
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rJMFF026J17+          TTTAGATGGATCATTGCTTCAAGAGCTTAGGAGAGGTGCAGACAGAGCTGAGATTTACAG
rJMFF017G08+          TTTAGATGGATCATTGCTTCAAGAGCTTAGGAGAGGTGCAGACAGAGCTGAGATTTACAG
                      ____________________________________________________________
consensus             TTTAGATGGATCATTGCTTCAAGAGCTTAGGAGAGGTGCAGACAGAGCTGAGATTTACAG
 
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rJMFF026J17+          CCTTGCTTTTTCTTCCACTGCCCAATGGCTAGCTGTCTCAAGTGATAAAGGAACTGTACA
rJMFF017G08+          CCTTGCTTTTTCTTCCACTGCCCAATGGCTAGCTGTCTCAAGTGATAAAGGAACTGTACA
rJMFF008O03+                      TTCCACTGCCCAATGGCTAGCTGTCTCAAGTGATAAAGGAACTGTACA
                      ____________________________________________________________
consensus             CCTTGCTTTTTCTTCCACTGCCCAATGGCTAGCTGTCTCAAGTGATAAAGGAACTGTACA
 
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rJMFF026J17+          TGTTTTCAACCTAAAGGTTGAATCAGGATCTCTAGGGGTTGAGAGATCTCGTGATCCAAC
rJMFF017G08+          TGTTTTCAACCTAAAGGTTGAATCAGGATCTCTAGGGGTTGAGAGATCTCGTGATCCAAC
rJMFF008O03+          TGTTTTCAACNTAAAGGTTGAATCAGGATCTCTAGGGGTTGAGAGATCTCGTGATCCAAC
                      ____________________________________________________________
consensus             TGTTTTCAACCTAAAGGTTGAATCAGGATCTCTAGGGGTTGAGAGATCTCGTGATCCAAC
 
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rJMFF026J17+          TGATACAAGTTCAACAACTCCATCAACTGTTTCACATCTCTCCTTCATTAAAGGTGTGCT
rJMFF017G08+          TGATACAAGTTCAACAACTCCATCAACTGTTTCACATCTCTCCTTCATTAAAGGTGTGCT
rJMFF008O03+          TGATACAAGTTCAACAACTCCATCAACTGTTTCACATCTCTCCTTCATTAAAGGTGTGCT
                      ____________________________________________________________
consensus             TGATACAAGTTCAACAACTCCATCAACTGTTTCACATCTCTCCTTCATTAAAGGTGTGCT
 
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rJMFF026J17+          GCCAAAATATTTCAGCTCTGAGTGGTCTGTGGCCCA                        
rJMFF017G08+          GCCAAAATATTTCAGCTCTGAGTGGTCTGTGGCCCAATTTCGTTTGCAAGAAGGTTTACA
rJMFF008O03+          GCCAAAATATTTCAGCTCTGAGTGGTCTGTGGCCCAATTTCGTTTGCAAGAAGGTTTACA
                      ____________________________________________________________
consensus             GCCAAAATATTTCAGCTCTGAGTGGTCTGTGGCCCAATTTCGTTTGCAAGAAGGTTTACA
 
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rJMFF017G08+          GCACATTGTTGCCTTTGGACACCAAAAAAATACAGTTCTTATACTTGGCATGGATGGCAG
rJMFF008O03+          GCACATTGTTGCCTTTGGACACCAAAAAAATACAGTTCTTATACTTGGCATGGATGGCAG
                      ____________________________________________________________
consensus             GCACATTGTTGCCTTTGGACACCAAAAAAATACAGTTCTTATACTTGGCATGGATGGCAG
 
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rJMFF017G08+          TTTCTACCGATGCCAGTTCGATCCAGCAGCCGGTGGGGAGATGACCCTCCTTGAACATCA
rJMFF008O03+          TTTCTACCGATGCCAGTTCGATCCAGCAGCCGGTGGGGAGATGACCCTCCTTGAACATCA
                      ____________________________________________________________
consensus             TTTCTACCGATGCCAGTTCGATCCAGCAGCCGGTGGGGAGATGACCCTCCTTGAACATCA
 
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rJMFF008O03+          AGATTTCTTGCAACCTGAGGAGAGCTTCTGATCACGAGATTGGAACATAAATATTAGCCA
                      ____________________________________________________________
consensus             AGATTTCTTGCAACCTGAGGAGAGCTTCTGATCACGAGATTGGAACATAAATATTAGCCA
 
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rJMFF008O03+          ACAATTTCTACTATTATGACCTGGCTCTGAGATTATATTAATTTATTTACCTTGTGAACG
                      ____________________________________________________________
consensus             ACAATTTCTACTATTATGACCTGGCTCTGAGATTATATTAATTTATTTACCTTGTGAACG
 
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rJMFF008O03+          AACATGAACTGTAAATATACAAGTGGTGACATTTGGGTCAGTTTTATCTTAAGATTGGGG
                      ____________________________________________________________
consensus             AACATGAACTGTAAATATACAAGTGGTGACATTTGGGTCAGTTTTATCTTAAGATTGGGG
 
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rJMFF008O03+          CTGTATATAAATTATCTTTCTGCAATTAGCCTAATTGCTATAAATGTCTTTGGCAATGCT
                      ____________________________________________________________
consensus             CTGTATATAAATTATCTTTCTGCAATTAGCCTAATTGCTATAAATGTCTTTGGCAATGCT
 
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rJMFF008O03+          CTTGAATCAATTTGCTTTCTGTAGCCACTATAATGAGGTTATTCCACTTTTGATTTCTTG
                      ____________________________________________________________
consensus             CTTGAATCAATTTGCTTTCTGTAGCCACTATAATGAGGTTATTCCACTTTTGATTTCTTG
 
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rJMFF008O03+          ATTATAGTGGTATTGGAGTATGTGAAGTTTGGTAAATTTTCATGGGCTGTTGGAAAAGTC
                      ____________________________________________________________
consensus             ATTATAGTGGTATTGGAGTATGTGAAGTTTGGTAAATTTTCATGGGCTGTTGGAAAAGTC