Contig 003954:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF020D06+                                       ANTAAAACGGGATTGNGTCGGTATTATGGCT
                      ____________________________________________________________
consensus                                          ANTAAAACGGGATTGNGTCGGTATTATGGCT
 
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rJMSF020D06+          GCCTTCAAACTCAACGATCCTTCTNGTCATCACATTATTGTTGCAAATACCCATATTTAC
                      ____________________________________________________________
consensus             GCCTTCAAACTCAACGATCCTTCTNGTCATCACATTATTGTTGCAAATACCCATATTTAC
 
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rJMSF020D06+          TGGGATCCCGAATGGATAGATGTCAAACTGGCACAAGCCAAATATTTGCTACGTCGCTTA
rJMFF007P18+                CCCGAATGGATAGATGTCAAACTGGCACAAGCCAAATATTTGCTACGTCGCTTA
                      ____________________________________________________________
consensus             TGGGATCCCGAATGGATAGATGTCAAACTGGCACAAGCCAAATATTTGCTACGTCGCTTA
 
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rJMSF020D06+          GCTGAATTCAAGTCAAGAGTGTCGGACCAATTTGGCTGCTCGCCTTCTGTATTAGTAGCA
rJMFF007P18+          GCTGAATTCAAGTCAAGAGTGTCGGACCAATTTGGCTGCTCGCCTTCTGTATTAGTAGCA
                      ____________________________________________________________
consensus             GCTGAATTCAAGTCAAGAGTGTCGGACCAATTTGGCTGCTCGCCTTCTGTATTAGTAGCA
 
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rJMSF020D06+          GGTGACTTCAATTCAGTCCCCGGGGATCAAGTATACCAATACATTGTTTCTGGTACCTCT
rJMFF007P18+          GGTGACTTCAATTCAGTCCCCGGGGATCAAGTATACCAATACATTGTTTCTGGTACCTCT
                      ____________________________________________________________
consensus             GGTGACTTCAATTCAGTCCCCGGGGATCAAGTATACCAATACATTGTTTCTGGTACCTCT
 
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rJMSF020D06+          CCGCTCGGTCCTCAGCCAGAAATCTCAGATGAGATGCCTATTCCGGTATGCAGTGTATAT
rJMFF007P18+          CCGCTCGGTCCTCAGCCAGAAATCTCAGATGAGATGCCTATTCCGGTATGCAGTGTATAT
                      ____________________________________________________________
consensus             CCGCTCGGTCCTCAGCCAGAAATCTCAGATGAGATGCCTATTCCGGTATGCAGTGTATAT
 
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rJMSF020D06+          GCATACACTAAAGGGGAGCCTCCGTTCACCAACTGCACCCCCGGTTTTACAGGAACTCTG
rJMFF007P18+          GCATACACTAAAGGGGAGCCTCCGTTCACCAACTGCACCCCCGGTTTTACAGGAACTCTG
                      ____________________________________________________________
consensus             GCATACACTAAAGGGGAGCCTCCGTTCACCAACTGCACCCCCGGTTTTACAGGAACTCTG
 
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rJMSF020D06+          GATTACGTTTTGTTTTCACCTTCTGGAGATATAAAACCAGTTAGCTGCCTCGAACTTCCG
rJMFF007P18+          GATTACGTTTTGTTTTCACCTTCTGGAGATATAAAACCAGTTAGCTGCCTCGAACTTCCG
                      ____________________________________________________________
consensus             GATTACGTTTTGTTTTCACCTTCTGGAGATATAAAACCAGTTAGCTGCCTCGAACTTCCG
 
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rJMSF020D06+          GGACCAGAATCATCCGATGTACAAGGTTGGTTGCCCAATTACTACCACCCAAGTGACCAT
rJMFF007P18+          GGACCAGAATCATCCGATGTACAAGGTTGGTTGCCCAATTACTACCACCCAAGTGACCAT
                      ____________________________________________________________
consensus             GGACCAGAATCATCCGATGTACAAGGTTGGTTGCCCAATTACTACCACCCAAGTGACCAT
 
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rJMSF020D06+          CTCCCAATTGGCGCCGAATTTGAAGTCGATCCATAAGCGAATTTCCATATATGGTTAGCT
rJMFF007P18+          CTCCCAATTGGCGCCGAATTTGAAGTCGATCCATAAGCGAATTTCCATATATGGTTAGCT
                      ____________________________________________________________
consensus             CTCCCAATTGGCGCCGAATTTGAAGTCGATCCATAAGCGAATTTCCATATATGGTTAGCT
 
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rJMSF020D06+          TCTCCTTCTTCCCTCCATACTAAGGGCTCACAATTCTTCTCTTAAATGATTTTTTTCACC
rJMFF007P18+          TCTCCTTCTTCCCTCCATACTAAGGGCTCACAATTCTTCTCTTAAATGATTTTTTTCACC
                      ____________________________________________________________
consensus             TCTCCTTCTTCCCTCCATACTAAGGGCTCACAATTCTTCTCTTAAATGATTTTTTTCACC
 
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rJMSF020D06+          TCCGCGCGCGTCAACTGAAAGATATGTTCTGTTTCAACTTTCAACTAAAAGCTTAAGCTG
rJMFF007P18+          TCCGCGCGCGTCAACTGAAAGATATGTTCTGTTTCAACTTTCAACTAAAAGCTTAAGCTG
                      ____________________________________________________________
consensus             TCCGCGCGCGTCAACTGAAAGATATGTTCTGTTTCAACTTTCAACTAAAAGCTTAAGCTG
 
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rJMSF020D06+          ATAGTGAGATTATACATTTATATTTCTATATACTGTATGCTCAACGTCGTCTTTCCCTGT
rJMFF007P18+          ATAGTGAGATTATACATTTATATTTCTATATACTGTATGCTCAACGTCGTCTTTCCCTGT
                      ____________________________________________________________
consensus             ATAGTGAGATTATACATTTATATTTCTATATACTGTATGCTCAACGTCGTCTTTCCCTGT
 
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rJMSF020D06+          GTTTTGTTGCATTTCATGGTTTTCAAAACATTGCTGCA                      
rJMFF007P18+          GTTTTGTTGTATTTCATGGTTTTCAAAACATTGCTGCAACTGTATTTTCGAAAAAACTGA
                      ____________________________________________________________
consensus             GTTTTGTTGTATTTCATGGTTTTCAAAACATTGCTGCAACTGTATTTTCGAAAAAACTGA