Contig 003952:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007D17Sequence607003952 (2)ref|XP_007047234.1|1e-38Calcium-binding EF-hand family protein, putative [Theobroma cacao] gb|EOX91391.1713003952 (2)ref|XP_007047234.1|2e-45Calcium-binding EF-hand family protein, putative [Theobroma cacao] gb|EOX91391.1

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-                                                               ATCGGCAT
                      ____________________________________________________________
consensus                                                                 ATCGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-           TACAGTAAGGGAGAGAGAAATTAAAGAGAGAGAGAGTATCTTGATATAATAATGTCGGGT
                      ____________________________________________________________
consensus             TACAGTAAGGGAGAGAGAAATTAAAGAGAGAGAGAGTATCTTGATATAATAATGTCGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-           TTCCTCAACTTCCGCGGTAGTTTCTCAAGAAAGTCGTCTTCGCCGGCGGCGGCGGCGGTT
rJMFF007D17+                 ACTTCCGCGGTAGTTTCTCAAGAAAGTCGTNTTCGCCGGCGGCGGCGGCGGTT
                      ____________________________________________________________
consensus             TTCCTCAACTTCCGCGGTAGTTTCTCAAGAAAGTCGTCTTCGCCGGCGGCGGCGGCGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-           AAGGAAAGGCCGAAAAAGACGGCGACATCCACGCAGGTTTTCCAACCAAACATGGACGAC
rJMFF007D17+          AAGGAAAGGCCGAAAAAGACGGCGACATCCACGCAGGTTTTCCAACCAAACATGGACGAC
                      ____________________________________________________________
consensus             AAGGAAAGGCCGAAAAAGACGGCGACATCCACGCAGGTTTTCCAACCAAACATGGACGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-           ATGAGAAAGGTGTTCAGCAGGTACGACACCAACGGGGACGGGAGAATCTCTATGGAGGAG
rJMFF007D17+          ATGAGAAAGGTGTTCAGCAGGTACGACACCAACGGGGACGGGAGAATCTCTATGGAGGAG
                      ____________________________________________________________
consensus             ATGAGAAAGGTGTTCAGCAGGTACGACACCAACGGGGACGGGAGAATCTCTATGGAGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-           TTCAAGCTGGCGATGCAGGTGATCGGCGGCGGCGGCACGGAGGCGGCCGGGGCGTTCGAG
rJMFF007D17+          TTCAAGCTGGCGATGCAGGTGATCGGCGGCGGCGGCACGGAGGCGGCCGGGGCGTTCGAG
                      ____________________________________________________________
consensus             TTCAAGCTGGCGATGCAGGTGATCGGCGGCGGCGGCACGGAGGCGGCCGGGGCGTTCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-           GCGGCGGACTCCGACGGAGACGGCTACATAGACTTCCAGGAGTTCATCGCCGTCCACAAC
rJMFF007D17+          GCGGCGGACTCCGACGGAGACGGCTACATAGACTTCCAGGAGTTCATCGCCGTCCACAAC
                      ____________________________________________________________
consensus             GCGGCGGACTCCGACGGAGACGGCTACATAGACTTCCAGGAGTTCATCGCCGTCCACAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-           CTGGGAGGGGGGATCAGCAAAGCTGACATCAAGAACGCATTCACGGTGTTCGACTTGGAC
rJMFF007D17+          CTGGGAGGGGGGATCAGCAAAGCTGACATCAAGAACGCATTCACGGTGTTCGACTTGGAC
                      ____________________________________________________________
consensus             CTGGGAGGGGGGATCAGCAAAGCTGACATCAAGAACGCATTCACGGTGTTCGACTTGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-           GGGAACGGAAAAATCAGCGCCGAGGAACTGTTGCAGGTGCTGCGGAGGATGGGAGANANG
rJMFF007D17+          GGGAACGGAAAAATCAGCGCCGAGGAACTGTTGCAGGTGCTGCGGAGGATGGGAGAGAGG
                      ____________________________________________________________
consensus             GGGAACGGAAAAATCAGCGCCGAGGAACTGTTGCAGGTGCTGCGGAGGATGGGAGAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-           TGTAACTTGGATTCTTGCCGGAAAATGGTGAAGGGTGTCNATTCCNACNGCNATGGACTG
rJMFF007D17+          TGTAACTTGGATTCTTGCCGGAAAATGGTGAAGGGTGTCGATTCCGACGGCGATGGACTG
                      ____________________________________________________________
consensus             TGTAACTTGGATTCTTGCCGGAAAATGGTGAAGGGTGTCGATTCCGACGGCGATGGACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF007D17-           ATTGATATCAAGGAATTTACNAANATGATGACNGCCGCCGGCACCACCNAACNTTTCTA 
rJMFF007D17+          ATTGATATCAAGGAATTTACGAAGATGATGACGGCCGCCGGCACCACCAAACGTTTCTAA
                      ____________________________________________________________
consensus             ATTGATATCAAGGAATTTACGAAGATGATGACGGCCGCCGGCACCACCAAACGTTTCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007D17+          TTTATTTGTTACGAGGATGTTTTGTGTTTATGCAGACAAACTTCAACAACTAAGGGAGAT
                      ____________________________________________________________
consensus             TTTATTTGTTACGAGGATGTTTTGTGTTTATGCAGACAAACTTCAACAACTAAGGGAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007D17+          GGTTTACTTGTTTCCAGTCAATCTCGATGGAACAATAATTGAAGTTAACATGCAGATTGG
                      ____________________________________________________________
consensus             GGTTTACTTGTTTCCAGTCAATCTCGATGGAACAATAATTGAAGTTAACATGCAGATTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007D17+          TTTAATTTAGCCGTAACGTTTTCCTATTTAAAAATTGTTAGGGTACGAGAGTATGTGATT
                      ____________________________________________________________
consensus             TTTAATTTAGCCGTAACGTTTTCCTATTTAAAAATTGTTAGGGTACGAGAGTATGTGATT