Contig 003949:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF001N12-                         AGAGGTATACAAGAGAAGGGGAAAGAGTACGTTAAAGTGAGAATCA
JMFF006N15-                         AGAGGTATACAAGAGAAGGGGAAAGAGTACGTTAAAGTGAGAATCA
                      ____________________________________________________________
consensus                           AGAGGTATACAAGAGAAGGGGAAAGAGTACGTTAAAGTGAGAATCA
 
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JMFF001N12-           TTATGAGGGCCGCCGGAAAAGAAATAGTAGTGGCGACTGTGCTGATGATGATGAGCTTCA
JMFF006N15-           TTATGAGGGCCGCCGGAAAAGAAATAGTAGTGGCGACTGTGCTGATGATGATGAGCTTCA
                      ____________________________________________________________
consensus             TTATGAGGGCCGCCGGAAAAGAAATAGTAGTGGCGACTGTGCTGATGATGATGAGCTTCA
 
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JMFF001N12-           CAGTGATGCTCACTTTGGCAGCAGAATACGAGATACCGTTGGACGACTACGACGACAGAT
JMFF006N15-           CAGTGATGCTCACTTTGGCAGCAGAATACGAGATACCGTTGGACGACTACGACGACAGAT
                      ____________________________________________________________
consensus             CAGTGATGCTCACTTTGGCAGCAGAATACGAGATACCGTTGGACGACTACGACGACAGAT
 
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JMFF001N12-           ACTATGATGATGAAGCTGAGAACTACAAGGAAGATGGGATATCTATGGTTCCAAAGGGTT
JMFF006N15-           ACTATGATGATGAAGCTGAGAACTACAAGGAAGATGGGATATCTATGGTTCCAAAGGGTT
                      ____________________________________________________________
consensus             ACTATGATGATGAAGCTGAGAACTACAAGGAAGATGGGATATCTATGGTTCCAAAGGGTT
 
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JMFF001N12-           GTCGAGACACTTGCGGCAACGTTAGCATTTACTACCCTTTTGGAATTGGACCCAGCAAAG
JMFF006N15-           GTCGAGACACTTGCGGCAACGTTAGCATTTACTACCCTTTTGGAATTGGACCCAGCAAAG
rJMFF006N15+                                                      ATTGGACCCAGCAAAG
                      ____________________________________________________________
consensus             GTCGAGACACTTGCGGCAACGTTAGCATTTACTACCCTTTTGGAATTGGACCCAGCAAAG
 
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JMFF001N12-           ATTGTTATTTAAACAAATGGTTCCTCATAAATTGCACCAAATCCTCCTCCGATGGTGTCG
JMFF006N15-           ATTGTTATTTAAACAAATGGTTCCTCATAAATTGCACCAAATCCTCCTCCGATGGTGTCG
rJMFF001N12+                                   CATAAATTGCACCAAATCCTCCTCCGATGGTGTCG
rJMFF006N15+          ATTGTTATTTAAACAAATGGTTCCTCATAAATTGCACCAAATCCTCCTCCGATGGTGTCG
                      ____________________________________________________________
consensus             ATTGTTATTTAAACAAATGGTTCCTCATAAATTGCACCAAATCCTCCTCCGATGGTGTCG
 
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JMFF001N12-           AGAAACCTTTCTTGAGCTCCTTTTCTGATGGCAAGAATGGGGTAAGAGAGATTCTGAGCA
JMFF006N15-           AGAAACCTTTCTTGAGCTCCTTTTCTGATGGCAAGAATGGGGTAAGAGAGATTCTGAGCA
rJMFF001N12+          AGAAACCTTTCTTGAGCTCCTTTTCTGATGGCAAGAATGGGGTAAGAGAGATTCTGAGCA
rJMFF006N15+          AGAAACCTTTCTTGAGCTCCTTTTCTGATGGCAAGAATGGGGTAAGAGAGATTCTGAGCA
                      ____________________________________________________________
consensus             AGAAACCTTTCTTGAGCTCCTTTTCTGATGGCAAGAATGGGGTAAGAGAGATTCTGAGCA
 
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JMFF001N12-           TTTCCAATGTAAGACAATCAATAATAATGAAAGAGTCGTTTTCTCCTCTCTGCCATACCA
JMFF006N15-           TTTCCAATGTAAGACAATCAATAATAATGAAAGAGTCGTTTTCTCCTCTCTGCCATACCA
rJMFF001N12+          TTTCCAATGTAAGACAATCAATAATAATGAAAGAGTCGTTTTCTCCTCTCTGCCATACCA
rJMFF006N15+          TTTCCAATGTAAGACAATCAATAATAATGAAAGAGTCGTTTTCTCCTCTCTGCCATACCA
                      ____________________________________________________________
consensus             TTTCCAATGTAAGACAATCAATAATAATGAAAGAGTCGTTTTCTCCTCTCTGCCATACCA
 
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JMFF001N12-           CCGCCGGGTCCGCCGTGGGAAGCAATAATCTCTCCATAATTAGCAACACAAAATTATCTG
JMFF006N15-           CCGCCGGGTCCGCCGTGGGAAGCAATAATCTCTCCATAATTAGCAACACAAAATTATCTG
rJMFF001N12+          CCGCCGGGTCCGCCGTGGGAAGCAATAATCTCTCCATAATTAGCAACACAAAATTATCTG
rJMFF006N15+          CCGCCGGGTCCGCCGTGGGAAGCAATAATCTCTCCATAATTAGCAACACAAAATTATCTG
                      ____________________________________________________________
consensus             CCGCCGGGTCCGCCGTGGGAAGCAATAATCTCTCCATAATTAGCAACACAAAATTATCTG
 
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JMFF001N12-           GAACCCCATTCTTTTACTCTTCC                                     
JMFF006N15-           GAACCCCATTCTTTTACTCTTCCAGTTACAACAGGTTCATGTTTTATGGTTGCGGCGGCG
rJMFF001N12+          GAACCCCATTCTTTTACTCTTCCAGTTACAACAGGTTCATGTTTTATGGTTGCGGCGGCG
rJMFF006N15+          GAACCCCATTCTTTTACTCTTCCAGTTACAACAGGTTCATGTTTTATGGTTGCGGCGGCG
                      ____________________________________________________________
consensus             GAACCCCATTCTTTTACTCTTCCAGTTACAACAGGTTCATGTTTTATGGTTGCGGCGGCG
 
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JMFF006N15-           CTGTCCTCACTACGC                                             
rJMFF001N12+          CTGTCCTCACTACGCCCGGTCAAGAATTCACAATGGCCGGTTGCAAGTTGAGTTGCAGCA
rJMFF006N15+          CTGTCCTCACTACGCCCGGTCAAGAATTCACAATGGCCGGTTGCAAGTTGAGTTGCAGCA
                      ____________________________________________________________
consensus             CTGTCCTCACTACGCCCGGTCAAGAATTCACAATGGCCGGTTGCAAGTTGAGTTGCAGCA
 
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rJMFF001N12+          GCAATAACACCACGGCGGCACCAAAATTTGCATATGATTGCAATGGCATAAACTGCTGCG
rJMFF006N15+          GCAATAACACCACGGCGGCACCAAAATTTGCATATGATTGCAATGGCATAAACTGCTGCG
                      ____________________________________________________________
consensus             GCAATAACACCACGGCGGCACCAAAATTTGCATATGATTGCAATGGCATAAACTGCTGCG
 
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rJMFF001N12+          ATCTTAGTTTTGACTACGATGTAAATGCATACCAAATCGACATCACAGATTCATCCATCG
rJMFF006N15+          ATCTTAGTTTTGACTACGATGTAAATGCATACCAAATCGACATCACAGATTCATCCATCG
                      ____________________________________________________________
consensus             ATCTTAGTTTTGACTACGATGTAAATGCATACCAAATCGACATCACAGATTCATCCATCG
 
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rJMFF001N12+          TCAACAACGCCTGCAACTATGCCTTCTTTCTTGCTACTGGTGATGATTTTACTACTACTT
rJMFF006N15+          TCAACAACGCCTGCAACTATGCCTTCTTTCTTGCTACTGGTGATGATTTTACTACTACTT
                      ____________________________________________________________
consensus             TCAACAACGCCTGCAACTATGCCTTCTTTCTTGCTACTGGTGATGATTTTACTACTACTT
 
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rJMFF001N12+          CTTCCCGATTGAGCCTTCAAAGGATTAGCAACCTGCTGCCGGAAGACAAGCTGGTTGTCC
rJMFF006N15+          CTTCCCGATTGAGCCTTCAAAGGATTAGCAACCTGCTGCCGGAAGACAAGCTGGTTGTCC
                      ____________________________________________________________
consensus             CTTCCCGATTGAGCCTTCAAAGGATTAGCAACCTGCTGCCGGAAGACAAGCTGGTTGTCC
 
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rJMFF001N12+          CGGTGGTTTGGAGGTGGAGCGTCACAAGAGACGACTTGAGTTACTTGCCCCCCACCTACT
rJMFF006N15+          CGGTGGTTTGGAGGTGGAGCGTCACAAGAGACGACTTGAGTTACTTGCCCCCCACCTACT
                      ____________________________________________________________
consensus             CGGTGGTTTGGAGGTGGAGCGTCACAAGAGACGACTTGAGTTACTTGCCCCCCACCTACT
 
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rJMFF001N12+          CACGCGACTGCGATCGATATGAGAAAATCTTTCCTCCGCAATTACGAGGGACATATTGGA
rJMFF006N15+          CACGCGACTGCGATCGATATGAGAAAATCTTTCCTCCGCAATTACGAGGGACATATTGGA
                      ____________________________________________________________
consensus             CACGCGACTGCGATCGATATGAGAAAATCTTTCCTCCGCAATTACGAGGGACATATTGGA
 
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rJMFF001N12+          GCTGTAGCTGCAAATTTCTGGAATACGGTAACGCTTACTTACCAAA              
rJMFF006N15+          GCTGTAGCTGCAAATTTCTGGAATACGGTAACGCTTACTTACCAAATGGATGCCCAAGGT
                      ____________________________________________________________
consensus             GCTGTAGCTGCAAATTTCTGGAATACGGTAACGCTTACTTACCAAATGGATGCCCAAGGT