Contig 003948:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF006M17-              AGCTGACCTCCAAAATATATTTGGAGTAGCAAAGTAGCTCGATCGACACTAAACCCT
JMSF052P14-                                                          GACACTAAACCCT
                      ____________________________________________________________
consensus                AGCTGACCTCCAAAATATATTTGGAGTAGCAAAGTAGCTCGATCGACACTAAACCCT
 
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JMFF006M17-           AGCATTCGCCGCGAGGCAGGAATCTTCAACAATGGAGAGGAAGGAAAAGAAGAAGAAGCT
JMSF052P14-           AGCATTCGCCGCGAGGCAGGAATCTTCAACAATGGAGAGGAAGGAAAAGAAGAAGAAGCT
                      ____________________________________________________________
consensus             AGCATTCGCCGCGAGGCAGGAATCTTCAACAATGGAGAGGAAGGAAAAGAAGAAGAAGCT
 
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JMFF006M17-           GGATGTGGAAAACCCTATACCATATGAAGAAGCTGAAAACGAGAAGCAGAAAGGAGAGGA
JMSF052P14-           GGATGTGGAAAACCCTATACCATATGAAGAAGCTGAAAACGAGAAGCAGAAAGGAGAGGA
                      ____________________________________________________________
consensus             GGATGTGGAAAACCCTATACCATATGAAGAAGCTGAAAACGAGAAGCAGAAAGGAGAGGA
 
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JMFF006M17-           GGAGACGCTGACTGTGAAGATGCAAACTTTGAGCTCAGACCCAGATAAAATCTCCCCGAT
JMSF052P14-           GGAGACGCTGACTGTGAAGATGCAAACTTTGAGCTCAGACCCAGATAAAATCTCCCCGAT
                      ____________________________________________________________
consensus             GGAGACGCTGACTGTGAAGATGCAAACTTTGAGCTCAGACCCAGATAAAATCTCCCCGAT
 
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JMFF006M17-           TGTCGGGTACTTTGCGTCCGGTTCCGATCCGTTTACAAAAAATTCTGCCGAGCAATCGGA
JMSF052P14-           TGTCGGGTACTTTGCGTCCGGTTCCGATCCGTTTACAAAAAATTCTGCCGAGCAATCGGA
                      ____________________________________________________________
consensus             TGTCGGGTACTTTGCGTCCGGTTCCGATCCGTTTACAAAAAATTCTGCCGAGCAATCGGA
 
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JMFF006M17-           TGCCACGGTCAGGGTTTACAGACATACAAAAAGGAGTAATAGGTTACAGCTCGCCGTGAG
JMSF052P14-           TGCCACGGTCAGGGTTTACAGACATACAAAAAGGAGTAATAGGTTACAGCTCGCCGTGAG
                      ____________________________________________________________
consensus             TGCCACGGTCAGGGTTTACAGACATACAAAAAGGAGTAATAGGTTACAGCTCGCCGTGAG
 
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JMFF006M17-           CCAGAATGACTCCCCGGTGGATTTCGTTGGGACGAATTATTCCGGCGAGGCTACGGCTCC
JMSF052P14-           CCAGAATGACTCCCCGGTGGATTTCGTTGGGACGAATTATTCCGGCGAGGCTACGGCTCC
                      ____________________________________________________________
consensus             CCAGAATGACTCCCCGGTGGATTTCGTTGGGACGAATTATTCCGGCGAGGCTACGGCTCC
 
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JMFF006M17-           TCAGCTCTGTAATTACGCGATTGGAGTGTTGGACAAGGAGACCCAAACGCTTAAGATTGT
JMSF052P14-           TCAGCTCTGTAATTACGCGATTGGAGTGTTGGACAAGGAGACCCAAACGCTTAAGATTGT
                      ____________________________________________________________
consensus             TCAGCTCTGTAATTACGCGATTGGAGTGTTGGACAAGGAGACCCAAACGCTTAAGATTGT
 
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JMFF006M17-           TCCTATTGCTGGAAACAAGG                                        
JMSF052P14-           TCCTATTGCTGGAAACAAGGTTATTAGATTGGATCCTAAGGTTGCAGGAGTTGACATACC
                      ____________________________________________________________
consensus             TCCTATTGCTGGAAACAAGGTTATTAGATTGGATCCTAAGGTTGCAGGAGTTGACATACC
 
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JMSF052P14-           AGAAGATGAAAATATGGATAAGAAACAGCTCACTGCAGAGGAAAAGGCTCTCAAAACCAG
                      ____________________________________________________________
consensus             AGAAGATGAAAATATGGATAAGAAACAGCTCACTGCAGAGGAAAAGGCTCTCAAAACCAG
 
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JMSF052P14-           AGCTTTAACTGAAATGTACTCTAACAAGAAATCTATTCGAAAGGCTAAGAAACTTGATAC
rJMSF052P14+                                                    GGCTAAGAAACTTGATAC
                      ____________________________________________________________
consensus             AGCTTTAACTGAAATGTACTCTAACAAGAAATCTATTCGAAAGGCTAAGAAACTTGATAC
 
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JMSF052P14-           TTTGCGGGAACAAGCAAATGCCGGTGCCGAGCATGTTGAAGGGAACGAGCTCATA     
rJMSF052P14+          TTTGCGGGAACAAGCAAATGCCGGTGCCGAGCATGTTGAAGGGAACGAGCTCATAAATCA
rJMFF006M17+                              CCGGTGCCGAGCATGTTGAAGGGAACGAGCTCATAAATCA
                      ____________________________________________________________
consensus             TTTGCGGGAACAAGCAAATGCCGGTGCCGAGCATGTTGAAGGGAACGAGCTCATAAATCA
 
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rJMSF052P14+          AGAAGCTCTTAACGTTGCCATCGCCACC-GCAACAGATGGTGGTGGCCGCAATATCCCAC
rJMFF006M17+          AGAAGCTCTTAACGTTGCCATCGCCACCGGCANCAGATGGTGGTGGCCGCAATATCCCAC
                      ____________________________________________________________
consensus             AGAAGCTCTTAACGTTGCCATCGCCACCGGCAACAGATGGTGGTGGCCGCAATATCCCAC
 
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rJMSF052P14+          CACATGATTTGGATGCCACTACACCTCAGGCAGCATATCCACTGGACAAGATTATTGCCA
rJMFF006M17+          CACATGATTTGGATGCCACTACACCTNAGGCAGCATATCCACTGGACAAGATTATTGCCA
                      ____________________________________________________________
consensus             CACATGATTTGGATGCCACTACACCTCAGGCAGCATATCCACTGGACAAGATTATTGCCA
 
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rJMSF052P14+          AGGGAGAGTGGGATTATCTCTCAGATATCTTTGATGTTTTGGAAACTGGAGAGCGCATTC
rJMFF006M17+          AGGGAGAGTGGGATTATCTCTCAGATATCTTTGATGTTTTGGAAACTGGAGAGCGCATTC
                      ____________________________________________________________
consensus             AGGGAGAGTGGGATTATCTCTCAGATATCTTTGATGTTTTGGAAACTGGAGAGCGCATTC
 
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rJMSF052P14+          CACTTGATGCTTTTCCAAGCTTTGTATGCAACAGAACGTATAAATTGGCAGATATTAAGG
rJMFF006M17+          CACTTGATGCTTTTCCAAGCTTTGTATGCAACAGAACGTATAAATTGGCAGATATTAAGG
                      ____________________________________________________________
consensus             CACTTGATGCTTTTCCAAGCTTTGTATGCAACAGAACGTATAAATTGGCAGATATTAAGG
 
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rJMSF052P14+          ATGAGACACAGAAGCGAAGAATGGCTGGGATTTTTTCATACATTACTCATCTTGTTAAGT
rJMFF006M17+          ATGAGACACAGAAGCGAAGAATGGCTGGGATTTTTTCATACATTACTCATCTTGTTAAGT
                      ____________________________________________________________
consensus             ATGAGACACAGAAGCGAAGAATGGCTGGGATTTTTTCATACATTACTCATCTTGTTAAGT
 
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rJMSF052P14+          TCAAGGATAAGCATTCTATGGATGGCTTTTCTTCTGCAAAGCATCACAAAATTCCAGGCA
rJMFF006M17+          TCAAGGATAAGCATTCTATGGATGGCTTTTCTTCTGCAAAGCATCACAAAATTCCAGGCA
                      ____________________________________________________________
consensus             TCAAGGATAAGCATTCTATGGATGGCTTTTCTTCTGCAAAGCATCACAAAATTCCAGGCA
 
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rJMSF052P14+          TGTTAGTCCAGAAATTCTCGTCACTGTTTGGTGTTTCAGAGTCGAAGAGACTTCCTGCTG
rJMFF006M17+          TGTTAGTCCAGAAATTCTCGTCACTGTTTGGTGTTTCAGAGTCGAAGAGACTTCCTGCTG
                      ____________________________________________________________
consensus             TGTTAGTCCAGAAATTCTCGTCACTGTTTGGTGTTTCAGAGTCGAAGAGACTTCCTGCTG
 
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rJMSF052P14+          AAAAAATTGATCTCCTCATCAGTTACGTACTTGTTCTCACTTTATACGCTGACAATTTCC
rJMFF006M17+          AAAAAATTGATCTCCTCATCAGTTACGTACTTGTTCTCACTTTATACGCTGACAATTTCC
                      ____________________________________________________________
consensus             AAAAAATTGATCTCCTCATCAGTTACGTACTTGTTCTCACTTTATACGCTGACAATTTCC
 
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rJMSF052P14+          GAAGTGATCCATCAGACATAGCCAAAGATCTCAGAATGAGTGCTGGAGATTTAAGGCCTC
rJMFF006M17+          GAAGTGATCCATCAGACATAGCCAAAGATCTCAGAATGAGTGCTGGAGATTTAAGGCCTC
                      ____________________________________________________________
consensus             GAAGTGATCCATCAGACATAGCCAAAGATCTCAGAATGAGTGCTGGAGATTTAAGGCCTC
 
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rJMSF052P14+          GTTTGGAGTTACTGGGTTGCAAATTCGTTAAGGAGAAGCGAGCGTTTCTAGCCACACTCC
rJMFF006M17+          GTTTGGAGTTACTGGGTTGCAAATTCGTTAAGGAGAAGCGAGCGTTTCTAGCCACACTCC
                      ____________________________________________________________
consensus             GTTTGGAGTTACTGGGTTGCAAATTCGTTAAGGAGAAGCGAGCGTTTCTAGCCACACTCC
 
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rJMSF052P14+          CTGTCCCTCTGAAATTCACAACAAAAAGGAAAAGGCGAAAGTAAAGAAGCATTTGAATAT
rJMFF006M17+          CTGTCCCTCTGAAATTCACAACAAAAAGGAAAAGGCGAAAGTAAAGAAGCATTTGAATAT
                      ____________________________________________________________
consensus             CTGTCCCTCTGAAATTCACAACAAAAAGGAAAAGGCGAAAGTAAAGAAGCATTTGAATAT
 
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rJMSF052P14+          TTTTCTTGTGTTTTAAAAACCATAGCCAGTTTCAGGCATTTTTGTTTAGACATTTCTGCA
rJMFF006M17+          TTTTCTTGTGTTTTAAAAACCATAGCCAGTTTCAGGCATTTTTGTTTAGACATTTCTGCA
                      ____________________________________________________________
consensus             TTTTCTTGTGTTTTAAAAACCATAGCCAGTTTCAGGCATTTTTGTTTAGACATTTCTGCA
 
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rJMSF052P14+          TGTGACTGGGCAGCTTGTACTCCATCT                                 
rJMFF006M17+          TGTGACTGGGCAGCTTGTACTCCATCTTATACAATCATGGTTTATTCTATCAATTTACAA
                      ____________________________________________________________
consensus             TGTGACTGGGCAGCTTGTACTCCATCTTATACAATCATGGTTTATTCTATCAATTTACAA