Contig 003946:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006F08Sequence552010153 (2)emb|CDP05859.1|4e-79unnamed protein product [Coffea canephora]650003946 (3)ref|XP_009591587.1|6e-31PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Nic
JMFN030J01Sequence601003946 (3)ref|XP_009758306.1|3e-58PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Nic
JMSF021M21Sequence650010153 (2)ref|XP_009591587.1|6e-101PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Nic744003946 (3)ref|XP_009591587.1|2e-42PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Nic

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN030J01- C
                      ____________________________________________________________
consensus C
 
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JMFN030J01- CACCTAAAGGACCAGAACATGCATCTCCTGCTCAATTGACACCCCAAGGAAATCAGAAAG
                      ____________________________________________________________
consensus CACCTAAAGGACCAGAACATGCATCTCCTGCTCAATTGACACCCCAAGGAAATCAGAAAG
 
. : . : . : . : . : . :
JMFN030J01- TAGAGCCAGTTGCAGCTGCTGAATCTGTAAAACAGGTTGTAGAACCTGCTGCTGCCCCTA
                      ____________________________________________________________
consensus TAGAGCCAGTTGCAGCTGCTGAATCTGTAAAACAGGTTGTAGAACCTGCTGCTGCCCCTA
 
. : . : . : . : . : . :
JMFN030J01- AAGTTGATTTTGCCACTGATCTATTTGACATGCTTTCAATGGATGAGCCAAGTGCAAATG
                      ____________________________________________________________
consensus AAGTTGATTTTGCCACTGATCTATTTGACATGCTTTCAATGGATGAGCCAAGTGCAAATG
 
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JMFN030J01- GCTCAGAAGCAGTAACTGCAGATGATAATGCATGGGCTGGTTTTCAGTCTGCTGGAGCAC
                      ____________________________________________________________
consensus GCTCAGAAGCAGTAACTGCAGATGATAATGCATGGGCTGGTTTTCAGTCTGCTGGAGCAC
 
. : . : . : . : . : . :
JMFN030J01- CAAAAACACCAGAAAGAACTGAGATAACGAAAGCTGATGATATCAAGCCTCAGTCCTCTT
                      ____________________________________________________________
consensus CAAAAACACCAGAAAGAACTGAGATAACGAAAGCTGATGATATCAAGCCTCAGTCCTCTT
 
. : . : . : . : . : . :
JMFN030J01- CTGGAATTGAAGATTTATTTAAGGATTCACCACCAATCATGCCTGCTACCTCATTAGAGA
rJMSF021M21+ TTTAAGGATTCACCNCCAATCATGCCTGNTACCTCATTAGAGA
                      ____________________________________________________________
consensus CTGGAATTGAAGATTTATTTAAGGATTCACCACCAATCATGCCTGCTACCTCATTAGAGA
 
. : . : . : . : . : . :
JMFN030J01- ATCCTCAAAAAGATGTTAAGAATGACATTATGAGCCTTTTTGACAAGTCCAATATGGTGT
rJMSF021M21+ AGCCTCAAAAAGATGTTAAGAATGACNTTATGAGCCTTTTTGACAAGTCCAATATGGNGT
                      ____________________________________________________________
consensus ATCCTCAAAAAGATGTTAAGAATGACATTATGAGCCTTTTTGACAAGTCCAATATGGTGT
 
. : . : . : . : . : . :
JMFN030J01- CACCATTCGCTATGCATCAACAGCAGCTTGTTATGCTGGCACAGCAACAGTCTCTTCTAA
rJMSF021M21+ CACCATTCGCTATGCATCAACAGCAGCTTGTTATGCTGGCACAGCAACAGTCTNTTTTAA
rJMFF006F08+ TATGCATCAACAGCAGCTTGTTATGCTGGCACAGCAACAGTNTTTTTTAA
                      ____________________________________________________________
consensus CACCATTCGCTATGCATCAACAGCAGCTTGTTATGCTGGCACAGCAACAGTCTTTTTTAA
 
. : . : . : . : . : . :
JMFN030J01- TGGCTGCTGCTGCTGCTGGTAATCCTAATGCTACTGGCGGTGCATTAAAAGCCCCTGGCA
rJMSF021M21+ TGGCTGCTGCTGCTGCTGGTAATCCTAATGCTACTGGCGGTGCNTTAAAAGCCCCTGGCA
rJMFF006F08+ TGGCTGCTGCTGCTGCTGGTAATCCTAATGCTACTGGCGGTGCATTAAAAGCCCCTGGCA
                      ____________________________________________________________
consensus TGGCTGCTGCTGCTGCTGGTAATCCTAATGCTACTGGCGGTGCATTAAAAGCCCCTGGCA
 
. : . : . : . : . : . :
JMFN030J01- ATGCACAACAGATGGCAACAGGCACCAACTTACCAAACCAAGTTTGGCCGAATTTTGG
rJMSF021M21+ ATGCNCAACAGATGGCAACNGGCNCCAACTTACCAAACCAAGTTTGGCCGAATTTTGGCT
rJMFF006F08+ ATGCACAACAGATGGCAACAGGCNCCAACTTACCAAACCAAGTTTGGCCGAATTTTGGNT
                      ____________________________________________________________
consensus ATGCACAACAGATGGCAACAGGCACCAACTTACCAAACCAAGTTTGGCCGAATTTTGGCT
 
. : . : . : . : . : . :
rJMSF021M21+ ACCNGTTCCCTGGAATGACAATGCCCNCAGCTGTAAAGAGTGAACCNGAGAAATTTATGC
rJMFF006F08+ ACCAGTTCCCTGGAATGACAATGCCCNCAGCTGTAAAGAGTGAACCAGAGAAATTTATGC
                      ____________________________________________________________
consensus ACCAGTTCCCTGGAATGACAATGCCCNCAGCTGTAAAGAGTGAACCAGAGAAATTTATGC
 
. : . : . : . : . : . :
rJMSF021M21+ AGATGGGTGCTACGGCTATGCCAGATTTAGCTGGGAATTCAATTCCATTTTCAACTTCCA
rJMFF006F08+ AGATGGGTGNTNCGGNTATGCCAGATTTAGCTGGGAATTCAATTCCATTTTCAACTTCCA
                      ____________________________________________________________
consensus AGATGGGTGCTACGGCTATGCCAGATTTAGCTGGGAATTCAATTCCATTTTCAACTTCCA
 
. : . : . : . : . : . :
rJMSF021M21+ GNGTNTACNCGATGGGNCAAAATAATTNTTCCNCCAATGGTATAGNGCCNCCTGGNCCAA
rJMFF006F08+ GNGTTTACNCGATGGGACAAAATAATTTTTCCNCCAATGGTATAGTGCCNCCTGGACCAA
                      ____________________________________________________________
consensus GNGTTTACNCGATGGGACAAAATAATTTTTCCNCCAATGGTATAGTGCCNCCTGGACCAA
 
. : . : . : . : . : . :
rJMSF021M21+ GCAAGCCNGTAACATTTTCAGTTTNTTCCATTTNTACNCNGTNGGNTAAAGATTACGACT
rJMFF006F08+ GCAAGCCAGTAACATTTTCAGTTTTTTCCATTTTTACACAGTCGGNTAAAGATTNCGACT
                      ____________________________________________________________
consensus GCAAGCCAGTAACATTTTCAGTTTTTTCCATTTTTACACAGTCGGNTAAAGATTACGACT
 
. : . : . : . : . : . :
rJMSF021M21+ TTTCCTNTTTAACNCAAGGAATGTTTTCAAAACGNTGAGGNGAAAAATCAATCCCCCNTG
rJMFF006F08+ TTTCCTNTTTAACNCAAGGAATGTTTTCAAAACGNTGAGGNGAAAAATCAATCCCCCATG
                      ____________________________________________________________
consensus TTTCCTNTTTAACNCAAGGAATGTTTTCAAAACGNTGAGGNGAAAAATCAATCCCCCATG
 
. : . : . : . : . : . :
rJMSF021M21+ GAAATGTATGATTNTACAATTTNTACTCNGTATTATATACNGAAAAAAAAAATAGCCTCT
rJMFF006F08+ GAAATGTATGATTTTACAATTTTTACTCAGTATTATATACAGAAAAAAAAAATAGCCTCT
                      ____________________________________________________________
consensus GAAATGTATGATTTTACAATTTTTACTCAGTATTATATACAGAAAAAAAAAATAGCCTCT
 
. : . : . : . : . : . :
rJMSF021M21+ GAAGGTTTAGCTCTCTTTACTCCTGCATTGGAGATTATTATAAACTATTTTGTAGAGCAG
rJMFF006F08+ GAAGGTTTAGCTCTCTTTACTCCTGCATTGGAGATTATTATAAACTATTTTGTAGAGCAG
                      ____________________________________________________________
consensus GAAGGTTTAGCTCTCTTTACTCCTGCATTGGAGATTATTATAAACTATTTTGTAGAGCAG
 
. : . : . : . : . : . :
rJMSF021M21+ CGATGCTGAGTTTTCTTTGGTGGTGAGGTTCATTTGTGTTG
rJMFF006F08+ CGATGCTGAGTTTTCTTTGGTGGTGAGGTTCATTTGTGTTGTATCTGGATCAATAAGCGG
                      ____________________________________________________________
consensus CGATGCTGAGTTTTCTTTGGTGGTGAGGTTCATTTGTGTTGTATCTGGATCAATAAGCGG