| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006F08 | Sequence | 552 | 010153 (2) | emb|CDP05859.1| | 4e-79 | unnamed protein product [Coffea canephora] | 650 | 003946 (3) | ref|XP_009591587.1| | 6e-31 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Nic |
| JMFN030J01 | Sequence | 601 | 003946 (3) | ref|XP_009758306.1| | 3e-58 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Nic | |||||
| JMSF021M21 | Sequence | 650 | 010153 (2) | ref|XP_009591587.1| | 6e-101 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Nic | 744 | 003946 (3) | ref|XP_009591587.1| | 2e-42 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Nic |
This contig is upended
. : . : . : . : . : . :
JMFN030J01- C
____________________________________________________________
consensus C
. : . : . : . : . : . :
JMFN030J01- CACCTAAAGGACCAGAACATGCATCTCCTGCTCAATTGACACCCCAAGGAAATCAGAAAG
____________________________________________________________
consensus CACCTAAAGGACCAGAACATGCATCTCCTGCTCAATTGACACCCCAAGGAAATCAGAAAG
. : . : . : . : . : . :
JMFN030J01- TAGAGCCAGTTGCAGCTGCTGAATCTGTAAAACAGGTTGTAGAACCTGCTGCTGCCCCTA
____________________________________________________________
consensus TAGAGCCAGTTGCAGCTGCTGAATCTGTAAAACAGGTTGTAGAACCTGCTGCTGCCCCTA
. : . : . : . : . : . :
JMFN030J01- AAGTTGATTTTGCCACTGATCTATTTGACATGCTTTCAATGGATGAGCCAAGTGCAAATG
____________________________________________________________
consensus AAGTTGATTTTGCCACTGATCTATTTGACATGCTTTCAATGGATGAGCCAAGTGCAAATG
. : . : . : . : . : . :
JMFN030J01- GCTCAGAAGCAGTAACTGCAGATGATAATGCATGGGCTGGTTTTCAGTCTGCTGGAGCAC
____________________________________________________________
consensus GCTCAGAAGCAGTAACTGCAGATGATAATGCATGGGCTGGTTTTCAGTCTGCTGGAGCAC
. : . : . : . : . : . :
JMFN030J01- CAAAAACACCAGAAAGAACTGAGATAACGAAAGCTGATGATATCAAGCCTCAGTCCTCTT
____________________________________________________________
consensus CAAAAACACCAGAAAGAACTGAGATAACGAAAGCTGATGATATCAAGCCTCAGTCCTCTT
. : . : . : . : . : . :
JMFN030J01- CTGGAATTGAAGATTTATTTAAGGATTCACCACCAATCATGCCTGCTACCTCATTAGAGA
rJMSF021M21+ TTTAAGGATTCACCNCCAATCATGCCTGNTACCTCATTAGAGA
____________________________________________________________
consensus CTGGAATTGAAGATTTATTTAAGGATTCACCACCAATCATGCCTGCTACCTCATTAGAGA
. : . : . : . : . : . :
JMFN030J01- ATCCTCAAAAAGATGTTAAGAATGACATTATGAGCCTTTTTGACAAGTCCAATATGGTGT
rJMSF021M21+ AGCCTCAAAAAGATGTTAAGAATGACNTTATGAGCCTTTTTGACAAGTCCAATATGGNGT
____________________________________________________________
consensus ATCCTCAAAAAGATGTTAAGAATGACATTATGAGCCTTTTTGACAAGTCCAATATGGTGT
. : . : . : . : . : . :
JMFN030J01- CACCATTCGCTATGCATCAACAGCAGCTTGTTATGCTGGCACAGCAACAGTCTCTTCTAA
rJMSF021M21+ CACCATTCGCTATGCATCAACAGCAGCTTGTTATGCTGGCACAGCAACAGTCTNTTTTAA
rJMFF006F08+ TATGCATCAACAGCAGCTTGTTATGCTGGCACAGCAACAGTNTTTTTTAA
____________________________________________________________
consensus CACCATTCGCTATGCATCAACAGCAGCTTGTTATGCTGGCACAGCAACAGTCTTTTTTAA
. : . : . : . : . : . :
JMFN030J01- TGGCTGCTGCTGCTGCTGGTAATCCTAATGCTACTGGCGGTGCATTAAAAGCCCCTGGCA
rJMSF021M21+ TGGCTGCTGCTGCTGCTGGTAATCCTAATGCTACTGGCGGTGCNTTAAAAGCCCCTGGCA
rJMFF006F08+ TGGCTGCTGCTGCTGCTGGTAATCCTAATGCTACTGGCGGTGCATTAAAAGCCCCTGGCA
____________________________________________________________
consensus TGGCTGCTGCTGCTGCTGGTAATCCTAATGCTACTGGCGGTGCATTAAAAGCCCCTGGCA
. : . : . : . : . : . :
JMFN030J01- ATGCACAACAGATGGCAACAGGCACCAACTTACCAAACCAAGTTTGGCCGAATTTTGG
rJMSF021M21+ ATGCNCAACAGATGGCAACNGGCNCCAACTTACCAAACCAAGTTTGGCCGAATTTTGGCT
rJMFF006F08+ ATGCACAACAGATGGCAACAGGCNCCAACTTACCAAACCAAGTTTGGCCGAATTTTGGNT
____________________________________________________________
consensus ATGCACAACAGATGGCAACAGGCACCAACTTACCAAACCAAGTTTGGCCGAATTTTGGCT
. : . : . : . : . : . :
rJMSF021M21+ ACCNGTTCCCTGGAATGACAATGCCCNCAGCTGTAAAGAGTGAACCNGAGAAATTTATGC
rJMFF006F08+ ACCAGTTCCCTGGAATGACAATGCCCNCAGCTGTAAAGAGTGAACCAGAGAAATTTATGC
____________________________________________________________
consensus ACCAGTTCCCTGGAATGACAATGCCCNCAGCTGTAAAGAGTGAACCAGAGAAATTTATGC
. : . : . : . : . : . :
rJMSF021M21+ AGATGGGTGCTACGGCTATGCCAGATTTAGCTGGGAATTCAATTCCATTTTCAACTTCCA
rJMFF006F08+ AGATGGGTGNTNCGGNTATGCCAGATTTAGCTGGGAATTCAATTCCATTTTCAACTTCCA
____________________________________________________________
consensus AGATGGGTGCTACGGCTATGCCAGATTTAGCTGGGAATTCAATTCCATTTTCAACTTCCA
. : . : . : . : . : . :
rJMSF021M21+ GNGTNTACNCGATGGGNCAAAATAATTNTTCCNCCAATGGTATAGNGCCNCCTGGNCCAA
rJMFF006F08+ GNGTTTACNCGATGGGACAAAATAATTTTTCCNCCAATGGTATAGTGCCNCCTGGACCAA
____________________________________________________________
consensus GNGTTTACNCGATGGGACAAAATAATTTTTCCNCCAATGGTATAGTGCCNCCTGGACCAA
. : . : . : . : . : . :
rJMSF021M21+ GCAAGCCNGTAACATTTTCAGTTTNTTCCATTTNTACNCNGTNGGNTAAAGATTACGACT
rJMFF006F08+ GCAAGCCAGTAACATTTTCAGTTTTTTCCATTTTTACACAGTCGGNTAAAGATTNCGACT
____________________________________________________________
consensus GCAAGCCAGTAACATTTTCAGTTTTTTCCATTTTTACACAGTCGGNTAAAGATTACGACT
. : . : . : . : . : . :
rJMSF021M21+ TTTCCTNTTTAACNCAAGGAATGTTTTCAAAACGNTGAGGNGAAAAATCAATCCCCCNTG
rJMFF006F08+ TTTCCTNTTTAACNCAAGGAATGTTTTCAAAACGNTGAGGNGAAAAATCAATCCCCCATG
____________________________________________________________
consensus TTTCCTNTTTAACNCAAGGAATGTTTTCAAAACGNTGAGGNGAAAAATCAATCCCCCATG
. : . : . : . : . : . :
rJMSF021M21+ GAAATGTATGATTNTACAATTTNTACTCNGTATTATATACNGAAAAAAAAAATAGCCTCT
rJMFF006F08+ GAAATGTATGATTTTACAATTTTTACTCAGTATTATATACAGAAAAAAAAAATAGCCTCT
____________________________________________________________
consensus GAAATGTATGATTTTACAATTTTTACTCAGTATTATATACAGAAAAAAAAAATAGCCTCT
. : . : . : . : . : . :
rJMSF021M21+ GAAGGTTTAGCTCTCTTTACTCCTGCATTGGAGATTATTATAAACTATTTTGTAGAGCAG
rJMFF006F08+ GAAGGTTTAGCTCTCTTTACTCCTGCATTGGAGATTATTATAAACTATTTTGTAGAGCAG
____________________________________________________________
consensus GAAGGTTTAGCTCTCTTTACTCCTGCATTGGAGATTATTATAAACTATTTTGTAGAGCAG
. : . : . : . : . : . :
rJMSF021M21+ CGATGCTGAGTTTTCTTTGGTGGTGAGGTTCATTTGTGTTG
rJMFF006F08+ CGATGCTGAGTTTTCTTTGGTGGTGAGGTTCATTTGTGTTGTATCTGGATCAATAAGCGG
____________________________________________________________
consensus CGATGCTGAGTTTTCTTTGGTGGTGAGGTTCATTTGTGTTGTATCTGGATCAATAAGCGG