| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006E02 | Sequence | 446 | 003615 (4) | ref|XP_009613894.1| | 1e-05 | PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis] | 739 | 003944 (3) | ref|XP_009613894.1| | 9e-39 | PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis] |
| JMSF012I17 | Sequence | 464 | 003615 (4) | ref|XP_009613894.1| | 2e-05 | PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis] | 722 | 003944 (3) | ref|XP_009613894.1| | 3e-41 | PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis] |
| JMSF014I22 | Sequence | 239 | 003615 (4) | 795 | 003944 (3) | ref|XP_009613894.1| | 1e-47 | PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF014I22+ TTCGTGGCCCATGTTCATGTGAGTCAATGTCGGTGGCTCAGGA
____________________________________________________________
consensus TTCGTGGCCCATGTTCATGTGAGTCAATGTCGGTGGCTCAGGA
. : . : . : . : . : . :
rJMSF014I22+ ATCTGGCTCTGGTCGTGTTTCTGGAATGTTCATGCTCGCTGAAGCATTATTTGAGGTACT
____________________________________________________________
consensus ATCTGGCTCTGGTCGTGTTTCTGGAATGTTCATGCTCGCTGAAGCATTATTTGAGGTACT
. : . : . : . : . : . :
rJMSF014I22+ GAATGAAATGGATCCCTTGTCACTTTCTTTATCTATGGTTTCACTTCCTGCCCCAGAGGC
____________________________________________________________
consensus GAATGAAATGGATCCCTTGTCACTTTCTTTATCTATGGTTTCACTTCCTGCCCCAGAGGC
. : . : . : . : . : . :
rJMSF012I17+ AA
rJMSF014I22+ AGTTGTTGATTCTTTACAAGTGAAAAGTTACTCGAAGAAAGAGGGATTAGCTATTGGGAA
rJMFF006E02+ AA
____________________________________________________________
consensus AGTTGTTGATTCTTTACAAGTGAAAAGTTACTCGAAGAAAGAGGGATTAGCTATTGGGAA
. : . : . : . : . : . :
rJMSF012I17+ TGATGTAACACAGTGCAACATATGCTTGGCTGATTATGAGGAAGGAGACGAGATACGAGT
rJMSF014I22+ TGATGTAACACAGTGCAACATATGCTTGGCTGATTATGAGGAAGGAGACGAGATACGAGT
rJMFF006E02+ TGATGTAACACAGTGCAACATATGCTTGGCTGATTATGAGGAAGGAGACGAGATACGAGT
____________________________________________________________
consensus TGATGTAACACAGTGCAACATATGCTTGGCTGATTATGAGGAAGGAGACGAGATACGAGT
. : . : . : . : . : . :
rJMSF012I17+ ACTCCCATGTCACCATGAGTTTCACATGGAATGCGTTGACAAATGGCTGAAAGAGATACA
rJMSF014I22+ ACTCCCATGTCACCATGAGTTTCACATGGAATGCGTTGACAAATGGCTGAAAGAGATACA
rJMFF006E02+ ACTCCCATGTCACCATGAGTTTCACATGGAATGCGTTGACAAATGGCTGAAAGAGATACA
____________________________________________________________
consensus ACTCCCATGTCACCATGAGTTTCACATGGAATGCGTTGACAAATGGCTGAAAGAGATACA
. : . : . : . : . : . :
rJMSF012I17+ TGGCGTGTGCCCACTCTGTCGTGGAGATGTTCGTTTGCAGGGTTCTACTTCAAACTGAGA
rJMSF014I22+ TGGCGTGTGCCCACTCTGTCGTGGAGATGTTCGTTTGCAGGGTTCTACTTCAAACTGAGA
rJMFF006E02+ TGGCGTGTGCCCACTCTGTCGTGGAGATGTTCGTTTGCAGGGTTCTACTTCAAACTGAGA
____________________________________________________________
consensus TGGCGTGTGCCCACTCTGTCGTGGAGATGTTCGTTTGCAGGGTTCTACTTCAAACTGAGA
. : . : . : . : . : . :
rJMSF012I17+ AGGCGTTCATTCCCTGTAAACTGTATTCTTGATAGCAAGCAAGGTTGGGAGAGCAAAGGG
rJMSF014I22+ AGGCGTTCATTCCCTGTAAACTGTATTCTTGATAGCAAGCAAGGTTGGGAGAGCAAAGGG
rJMFF006E02+ AGGCGTTCATTCCCTGTAAACTGTATTCTTGATAGCAAGCAAGGTTGGGAGAGCAAAGGG
____________________________________________________________
consensus AGGCGTTCATTCCCTGTAAACTGTATTCTTGATAGCAAGCAAGGTTGGGAGAGCAAAGGG
. : . : . : . : . : . :
rJMSF012I17+ GGCGCCAAAATACAACTCATTTCTTCATCGTTATTGGTAAATAGTTTGTGGAATGGAAGG
rJMSF014I22+ GGCGCCAAAATACAACTCATTTCTTCATCGTTATTGGTAAATAGTTTGTGGAATGGAAGG
rJMFF006E02+ GGCGCCAAAATACAACTCATTTCTTCATCGTTATTGGTAAATAGTTTGTGGAATGGAAGG
____________________________________________________________
consensus GGCGCCAAAATACAACTCATTTCTTCATCGTTATTGGTAAATAGTTTGTGGAATGGAAGG
. : . : . : . : . : . :
rJMSF012I17+ AAATGAAGCGGCTTTTACTTGGCATTGTAGTAGAGAACGGAAGGAAAATATAGCCAAACC
rJMSF014I22+ AAATGAAGCGGCTTTTACTTGGCATTGTAGTAGAGAACGGAAGGAAAATATAGCCAAACC
rJMFF006E02+ AAATGAAGCGGC-TTTACTTGGCATTGTAGTAGAGAACGGAAGGAAAATATAGCCAAACC
____________________________________________________________
consensus AAATGAAGCGGCTTTTACTTGGCATTGTAGTAGAGAACGGAAGGAAAATATAGCCAAACC
. : . : . : . : . : . :
rJMSF012I17+ GAGATCTATTATCATCGCCTTTATGAAGTCGAGGCTTTCTTGAGTTCAATATCTGCAATG
rJMSF014I22+ GAGATCTATTATCATCGCCTTTATGAAGTCGAGGCTTTCTTGAGTTCAATATCTGCAATG
rJMFF006E02+ GAGATCTATTATCATCGCCTTTATGAAGTCGAGGCTTTCTTGAGTTCAATATCTGCAATG
____________________________________________________________
consensus GAGATCTATTATCATCGCCTTTATGAAGTCGAGGCTTTCTTGAGTTCAATATCTGCAATG
. : . : . : . : . : . :
rJMSF012I17+ ACTTTCATGACTCTGGTTTGGTGCTTTTCTTCCTTTCCGCGGTCCCCTCAAAACCAAGGA
rJMSF014I22+ ACTTTCATGACTCTGGTTTGGTGCTTTTCTTCCTTTCCGCGGTCCCCTCAAAACCAAGGA
rJMFF006E02+ ACTTTCATGACTCTGGTTTGGTGCTTTTCTTCCTTTCCGCGGTCCCCTCAAAACCAAGGA
____________________________________________________________
consensus ACTTTCATGACTCTGGTTTGGTGCTTTTCTTCCTTTCCGCGGTCCCCTCAAAACCAAGGA
. : . : . : . : . : . :
rJMSF012I17+ CTAGCGCTTCCCTGCGGCTCCATCGGGCACAATGTTGAGATCAATTTAGTAAAATAAGGC
rJMSF014I22+ CTAGCGCTTCCCTGCGGCTCCATCGGGCACAATGTTGAGATCAATTTAGTAAAATAAGGC
rJMFF006E02+ CTAGCGCTTCCCTGCGGCTCCATCGGGCACAATGTTGAGATCAATTTAGTAAAATAAGGC
____________________________________________________________
consensus CTAGCGCTTCCCTGCGGCTCCATCGGGCACAATGTTGAGATCAATTTAGTAAAATAAGGC
. : . : . : . : . : . :
rJMSF012I17+ GGATTTGCTCTTGTATACAAGAT
rJMSF014I22+ GGATTTGCTCTTGTATACAAGATTCAAGAAGT
rJMFF006E02+ GGATTTGCTCTTGTATACAAGATTCAAGAAGTGTATTTCAATATTCAATCAAGGAAAGAA
____________________________________________________________
consensus GGATTTGCTCTTGTATACAAGATTCAAGAAGTGTATTTCAATATTCAATCAAGGAAAGAA