Contig 003943:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005N19Sequence225022700674003943 (3)ref|XP_010095809.1|1e-72Lipoyl synthase [Morus notabilis] gb|EXB62277.1| Lipoyl synthase [Morus notabili
JMFF039L06Sequence558003943 (3)ref|XP_009587293.1|2e-120PREDICTED: lipoyl synthase 2, mitochondrial-like, partial [Nicotiana tomentosif787019149ref|XP_009587293.1|3e-119PREDICTED: lipoyl synthase 2, mitochondrial-like, partial [Nicotiana tomentosif
JMSF031L15Sequence616023221ref|XP_004243321.1|8e-70PREDICTED: lipoyl synthase, mitochondrial [Solanum lycopersicum]779003943 (3)ref|XP_009587293.1|4e-108PREDICTED: lipoyl synthase 2, mitochondrial-like, partial [Nicotiana tomentosif

Alignment

This contig is upended


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JMFF039L06-                                              TCCACCCCCTCCTGACCCGAATGAA
                      ____________________________________________________________
consensus                                                TCCACCCCCTCCTGACCCGAATGAA
 
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JMFF039L06-           CCATCCAATGTGGCTGAGGCAATTGCTTCATGGGGTTTGGATTATGTTGTGATCACTAGT
                      ____________________________________________________________
consensus             CCATCCAATGTGGCTGAGGCAATTGCTTCATGGGGTTTGGATTATGTTGTGATCACTAGT
 
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JMFF039L06-           GTTGACCGTGATGATTTACCCGACCAAGGAAGCGGTCATTTTACAGAGACAGTACAGAAG
rJMSF031L15+                                                 TTTACAGAGACAGTACAGAAG
                      ____________________________________________________________
consensus             GTTGACCGTGATGATTTACCCGACCAAGGAAGCGGTCATTTTACAGAGACAGTACAGAAG
 
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JMFF039L06-           CTTAAGGCATTGAAACCAAATATGCTCATAG-AAGCACTGGTTCCGGACTTTAGAGGGGA
rJMSF031L15+          CTTAAGGCATTGAAACCAAATATGCTCATAGNAAGCACTGGTTCCGGACTTTAGAGGGGA
                      ____________________________________________________________
consensus             CTTAAGGCATTGAAACCAAATATGCTCATAGNAAGCACTGGTTCCGGACTTTAGAGGGGA
 
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JMFF039L06-           TCCTAGTTGTGTTGAGAAAGTTGCAAAGTCTGGATTAGATGTTTTTGCTCATAATATTGA
rJMSF031L15+          TCCTAGTTGTGTTGAGAAAGTTGCAAAGTCTGGATTAGATGTTTTTGCTCATAATATTGA
                      ____________________________________________________________
consensus             TCCTAGTTGTGTTGAGAAAGTTGCAAAGTCTGGATTAGATGTTTTTGCTCATAATATTGA
 
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JMFF039L06-           AACAGTTGAAGAGCTCCAGAGTGTTGTACGAGATCACCGTGCTAACTTTAAGCAGTCCAT
rJMSF031L15+          AACAGTTGAAGAGCTCCAGAGCGTTGTACGAGATCACCGTGCTAACTTTAAGCAGTCCAT
rJMFF005N19+                                                        TTTAAGCAGTCCAT
                      ____________________________________________________________
consensus             AACAGTTGAAGAGCTCCAGAGTGTTGTACGAGATCACCGTGCTAACTTTAAGCAGTCCAT
 
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JMFF039L06-           GGATGTCTTAATGATGGCAAAGGACTATGCTCCTGCTGGTACGCTCACCAAGACATCAAT
rJMSF031L15+          GGATGTCTTAATGATGGCAAAGGACTATGCTCCTGCTGGTACGCTCACCAAGACATCAAT
rJMFF005N19+          GGATGTCTTAATAATGGCCAAGGAATATGCACCTACCGGTACACTGACCAAGACATCGAT
                      ____________________________________________________________
consensus             GGATGTCTTAATGATGGCAAAGGACTATGCTCCTGCTGGTACGCTCACCAAGACATCAAT
 
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JMFF039L06-           AATGTTGGGCTGTGGAGAAACACCAGACCAAGTTGTTAAAACAATGGAAAAGGTACGAGC
rJMSF031L15+          AATGTTGGGCTGTGGAGAAACACCAGACCAAGTTGTTAAAACAATGGAAAAGGTACGAGC
rJMFF005N19+          AATGTTGGGATGTGGAGAAACGCCCGATCAAGTGATTAAAACAATGGAAAAGGTGAGGGA
                      ____________________________________________________________
consensus             AATGTTGGGCTGTGGAGAAACACCAGACCAAGTTGTTAAAACAATGGAAAAGGTACGAGC
 
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JMFF039L06-           AGCAGGTGTTGATGTAATGACGTTTGGTCAGTATATGAGACCCTCAAAGCGCCACATGCC
rJMSF031L15+          AGCAGGTGTTGATGTAATGACGTTTGGTCAGTATATGAGACCCTCAAAGCGCCACATGCC
rJMFF005N19+          AGCGGGTGTTGATGTAATGACATTTGGGCAATACATGAGACCCTCAAAGCGTCACATGCC
                      ____________________________________________________________
consensus             AGCAGGTGTTGATGTAATGACGTTTGGTCAGTATATGAGACCCTCAAAGCGCCACATGCC
 
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JMFF039L06-           TGTATCAGAGTACATTACTCCTGAGGCTTTTGAGAAGTATCAAGTCCTTGG         
rJMSF031L15+          TGTATCAGAGTACATTACTCCTGAGGCTTTTGAGAAGTATCAAGTCCTTGGGATGCAAAT
rJMFF005N19+          TGTGTCGGAATACATAACTCCAGAAGCTTTTGACAAGTATCGAGTTCTTGGAATGGAAAT
                      ____________________________________________________________
consensus             TGTATCAGAGTACATTACTCCTGAGGCTTTTGAGAAGTATCAAGTCCTTGGGATGGAAAT
 
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rJMSF031L15+          GGGATTTCGATATGTGGCATCTGGTCCCATGGTCAGATCATCATACAAGGCAGGAGAATT
rJMFF005N19+          GGGATTCCGGTATGTGGCATCTGGACCGATGGTTAGGTCCTCGTACAAGGCAGGCGAGTT
                      ____________________________________________________________
consensus             GGGATTTCGGTATGTGGCATCTGGTCCGATGGTTAGGTCCTCGTACAAGGCAGGCGAGTT
 
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rJMSF031L15+          TTACATTAAGTCTATGATTGAATCAGATCGTGCTGCATCTT                   
rJMFF005N19+          TTACATAAAATCCATGATAGAATCAGACCGCGCTGCATCTTCAGTGTAACATCCGGTTTT
                      ____________________________________________________________
consensus             TTACATTAAGTCTATGATTGAATCAGATCGTGCTGCATCTTCAGTGTAACATCCGGTTTT
 
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rJMFF005N19+          TCATACAATAGAATTTACTGCTTCAGTGGTTTGCTTTATGTGCTCCCCTAATTGCTTGGT
                      ____________________________________________________________
consensus             TCATACAATAGAATTTACTGCTTCAGTGGTTTGCTTTATGTGCTCCCCTAATTGCTTGGT
 
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rJMFF005N19+          CTACTTTTGGTGCAAGCCCCATTCAATCTTCTTCCCATCTCAAGCAAGAATCCACAGCAG
                      ____________________________________________________________
consensus             CTACTTTTGGTGCAAGCCCCATTCAATCTTCTTCCCATCTCAAGCAAGAATCCACAGCAG
 
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rJMFF005N19+          AGTGTGAGGCAATGGGAAAAACATTATTTGTACTTCATGTTACTTGTACATATGATTGTT
                      ____________________________________________________________
consensus             AGTGTGAGGCAATGGGAAAAACATTATTTGTACTTCATGTTACTTGTACATATGATTGTT
 
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rJMFF005N19+          GATGTAATTATAATGTTTTGGATATTGCAATTTGATCATTGTTCAATTGTGTGTAAAGAC
                      ____________________________________________________________
consensus             GATGTAATTATAATGTTTTGGATATTGCAATTTGATCATTGTTCAATTGTGTGTAAAGAC
 
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rJMFF005N19+          CTTCCATTTCATACCTCGAATGTTCAATATGATTGGGAATAACAAAGCACAGTATGATGC
                      ____________________________________________________________
consensus             CTTCCATTTCATACCTCGAATGTTCAATATGATTGGGAATAACAAAGCACAGTATGATGC