Contig 003941:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005I19Sequence702003941 (3)gb|AIY60706.1|2e-47rhomboid protein Lonja32412 [Lonicera japonica]
JMFF036O24Sequence622003941 (3)ref|XP_009608216.1|6e-63PREDICTED: inactive rhomboid protein 1-like isoform X1 [Nicotiana tomentosiform690003941 (3)gb|AIY60706.1|2e-47rhomboid protein Lonja32412 [Lonicera japonica]

Alignment

This contig is upended


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JMFF036O24-                                   GTCAGCCATCACCATGCGACTCTCGCTCGAAGCGCC
                      ____________________________________________________________
consensus                                     GTCAGCCATCACCATGCGACTCTCGCTCGAAGCGCC
 
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JMFF036O24-           CAGAGAGACACCGAGAACGAGAATCTAGAGAGGGGGAGGATGCGGAGGGGCGGTATTGAT
                      ____________________________________________________________
consensus             CAGAGAGACACCGAGAACGAGAATCTAGAGAGGGGGAGGATGCGGAGGGGCGGTATTGAT
 
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JMFF036O24-           ATAGAGAGCGCGGGGGAGAAGAAGAAGAGGGGAGGCAATTACGCCGCGGCAATTGACGGC
                      ____________________________________________________________
consensus             ATAGAGAGCGCGGGGGAGAAGAAGAAGAGGGGAGGCAATTACGCCGCGGCAATTGACGGC
 
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JMFF036O24-           GACGACGACGGAGATAGCCACTGGGTTTCATGGCTCATCCCTGTGTTCGTCGTGGCCAAC
                      ____________________________________________________________
consensus             GACGACGACGGAGATAGCCACTGGGTTTCATGGCTCATCCCTGTGTTCGTCGTGGCCAAC
 
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JMFF036O24-           GTTGCGCTGTTCGTCGTTACCTTGTACGTCAACGATTGTCCTAAGCATACCAACGGCTGT
                      ____________________________________________________________
consensus             GTTGCGCTGTTCGTCGTTACCTTGTACGTCAACGATTGTCCTAAGCATACCAACGGCTGT
 
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JMFF036O24-           ATGGCTAGCTTTCTCGGACGCTTCTCTTTCCAGCCCCTCCATCAGAATCCTCTCTTTGGC
                      ____________________________________________________________
consensus             ATGGCTAGCTTTCTCGGACGCTTCTCTTTCCAGCCCCTCCATCAGAATCCTCTCTTTGGC
 
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JMFF036O24-           CCTTCTGCTTCCACATTAAGGAAGATGGGTGGTCTTGAGTGGGAAAAGGTTGTGCATCAT
                      ____________________________________________________________
consensus             CCTTCTGCTTCCACATTAAGGAAGATGGGTGGTCTTGAGTGGGAAAAGGTTGTGCATCAT
 
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JMFF036O24-           CATCAAGAATGGAGGCTTATATCATGTATCTGGTTACACGCTGGTCTTATTCACCTGATT
                      ____________________________________________________________
consensus             CATCAAGAATGGAGGCTTATATCATGTATCTGGTTACACGCTGGTCTTATTCACCTGATT
 
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JMFF036O24-           GTAAATATGCTGAGTCTTGTGATTATTGGCATTCGTCTTGAGCAGCAATGTGGCTTTGTT
                      ____________________________________________________________
consensus             GTAAATATGCTGAGTCTTGTGATTATTGGCATTCGTCTTGAGCAGCAATGTGGCTTTGTT
 
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JMFF036O24-           CGGATTGGAATTGTCTACTTCTTTTCAGGATTTGGGGGGAGTGTGCTTTCTTCGTTATTC
rJMFF036O24+                             TCTTTTCAGGATTTGGGGGGAGTGTGCTTTCTTCGTTATTC
rJMFF005I19+                             TCTTTTCAGGATTTGGGGGGAGTGTGCTTTCTTCGTTATTC
                      ____________________________________________________________
consensus             CGGATTGGAATTGTCTACTTCTTTTCAGGATTTGGGGGGAGTGTGCTTTCTTCGTTATTC
 
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JMFF036O24-           ATACAGAGGAGTGTATCTGTTGGTGCTTCGGGGGCTCTTTTTGGGC              
rJMFF036O24+          ATACAGAGGAGTGTATCTGTTGGTGCTTCGGGGGCTCTTTTTGGGCTTCTTGGAGCGATG
rJMFF005I19+          ATACAGAGGAGTGTATCTGTTGGTGCTTCGGGGGCTCTTTTTGGGCTTCTTGGAGCGATG
                      ____________________________________________________________
consensus             ATACAGAGGAGTGTATCTGTTGGTGCTTCGGGGGCTCTTTTTGGGCTTCTTGGAGCGATG
 
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rJMFF036O24+          CTTTCTGAGCTTCTTACTAATTGGTCAATTTATACCAACAAGGTTGCTGCTTTACTCACA
rJMFF005I19+          CTTTCTGAGCTTCTTACTAATTGGTCAATTTATACCAACAAGGTTGCTGCTTTACTCACA
                      ____________________________________________________________
consensus             CTTTCTGAGCTTCTTACTAATTGGTCAATTTATACCAACAAGGTTGCTGCTTTACTCACA
 
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rJMFF036O24+          CTTCTGGTGATAGTGGTCTTGAATCTTGCAGTCGGAATCCTGCCACACGTTGACAATTTT
rJMFF005I19+          CTTCTGGTGATAGTGGTCTTGAATCTTGCAGTCGGAATCCTGCCACACGTTGACAATTTT
                      ____________________________________________________________
consensus             CTTCTGGTGATAGTGGTCTTGAATCTTGCAGTCGGAATCCTGCCACACGTTGACAATTTT
 
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rJMFF036O24+          GCCCACATCGGTGGATTCTTGACGGGTTTCCTTCTTGGCTTTGTCTTGCTGCCCCGGCCT
rJMFF005I19+          GCCCACATCGGTGGATTCTTGACGGGTTTCCTTCTTGGCTTTGTCTTGCTGCCCCGGCCT
                      ____________________________________________________________
consensus             GCCCACATCGGTGGATTCTTGACGGGTTTCCTTCTTGGCTTTGTCTTGCTGCCCCGGCCT
 
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rJMFF036O24+          CAGTTAGGGTGGATAGAACGTAGTAATCTTCCACCCGAGATTCGTGTCAAATCCAAGTAC
rJMFF005I19+          CAGTTAGGGTGGATAGAACGTAGTAATCTTCCACCCGAGATTCGTGTCAAATCCAAGTAC
                      ____________________________________________________________
consensus             CAGTTAGGGTGGATAGAACGTAGTAATCTTCCACCCGAGATTCGTGTCAAATCCAAGTAC
 
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rJMFF036O24+          AAGCCTTACCAATATGCGCTGTGGTTGGCATCTCTGGTTTTATTGATAGCAGGGTTTACA
rJMFF005I19+          AAGCCTTACCAATATGCGCTGTGGTTGGCATCTCTGGTTTTATTGATAGCAGGGTTTACA
                      ____________________________________________________________
consensus             AAGCCTTACCAATATGCGCTGTGGTTGGCATCTCTGGTTTTATTGATAGCAGGGTTTACA
 
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rJMFF036O24+          GTAGGTTTGGTTATGCTGTTCCGCGGGGAGAATGGGTATGATCGTTGCCATTGGTGCCGT
rJMFF005I19+          GTAGGTTTGGTTATGCTGTTCCGCGGGGAGAATGGGTATGATCGTTGCCATTGGTGCCGT
                      ____________________________________________________________
consensus             GTAGGTTTGGTTATGCTGTTCCGCGGGGAGAATGGGTATGATCGTTGCCATTGGTGCCGT
 
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rJMFF036O24+          TACCTGAGCTGTGTGCCAACTAGTCAATGGAAGTGTGATGCCACTTGATCTTCATTAGTT
rJMFF005I19+          TACCTGAGCTGTGTGCCAACTAGTCAATGGAAGTGTGATGCCACTTGATCTTCATTAGTT
                      ____________________________________________________________
consensus             TACCTGAGCTGTGTGCCAACTAGTCAATGGAAGTGTGATGCCACTTGATCTTCATTAGTT
 
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rJMFF036O24+          GTAGATCCTATAGTTTGTAGAGTGCTTGTGTTTACTTCCCTCTAAGAATTTATGTCTGGG
rJMFF005I19+          GTAGATCCTATAGTTTGTAGAGTGCTTGTGTTTACTTCCCTCTAAGAATTTATGTCTGGG
                      ____________________________________________________________
consensus             GTAGATCCTATAGTTTGTAGAGTGCTTGTGTTTACTTCCCTCTAAGAATTTATGTCTGGG
 
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rJMFF036O24+          TGATTTTACTATGTTTTTAAAGCACGATAGCAGAAAATTTTTGCACTGTTTCTTTTAGCT
rJMFF005I19+          TGATTTTACTATGTTTTTAAAGCACGATAGCAGAAAATTTTTGCACTGTTTCTTTTAGCT
                      ____________________________________________________________
consensus             TGATTTTACTATGTTTTTAAAGCACGATAGCAGAAAATTTTTGCACTGTTTCTTTTAGCT
 
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rJMFF036O24+          TTGCTTTTGTTTCAGTAGTACACAGAACTGTTTGAGTAGATTAAGGTAT           
rJMFF005I19+          TTGCTTTTGTTTCAGTAGTACACAGAACTGTTTGAGTAGATTAAGGTATACTTGAGGAGT
                      ____________________________________________________________
consensus             TTGCTTTTGTTTCAGTAGTACACAGAACTGTTTGAGTAGATTAAGGTATACTTGAGGAGT