| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003G11 | Sequence | 544 | 002104 (5) | ref|XP_006344418.1| | 132 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] | 513 | 003936 (4) | gb|AFK47156.1| | 5e-24 | unknown [Medicago truncatula] |
| JMSF008E07 | Sequence | 321 | 002104 (5) | ref|XP_006344418.1| | 102 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] | 506 | 003936 (4) | ref|XP_006344418.1| | 95.5 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] |
| JMSF011G23 | Sequence | 268 | 002104 (5) | ref|XP_006344418.1| | 83.2 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] | 561 | 003936 (4) | ref|XP_006344418.1| | 189 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] |
| JMSF013J11 | Sequence | 513 | 002104 (5) | ref|XP_006344418.1| | 125 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] | 655 | 003936 (4) | ref|XP_006344418.1| | 288 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF013J11+ GGAG
____________________________________________________________
consensus GGAG
. : . : . : . : . : . :
rJMSF013J11+ CGTTGGGCATACGCCGTTTGGGCCCTTTTCGGAAATTTCATCGCTGTCCTTTGTACAGAA
____________________________________________________________
consensus CGTTGGGCATACGCCGTTTGGGCCCTTTTCGGAAATTTCATCGCTGTCCTTTGTACAGAA
. : . : . : . : . : . :
rJMSF013J11+ AGATGCTGCTCGAAGGAATGTTCTTTTGACGTCTTTGAACTATAGTCTCATGAGTGCTAT
____________________________________________________________
consensus AGATGCTGCTCGAAGGAATGTTCTTTTGACGTCTTTGAACTATAGTCTCATGAGTGCTAT
. : . : . : . : . : . :
rJMSF013J11+ CGATGTCATGGAATCCATTGCTTCACATGGCGGGGAGAGGAAACTCCTTAAGCATAATCA
rJMSF011G23+ GATGTCATGGAATCCNTTGCTTCNCATGGNGGGGNGNGGAAACTCCTTAAGCATAATCA
____________________________________________________________
consensus CGATGTCATGGAATCCATTGCTTCACATGGCGGGGAGAGGAAACTCCTTAAGCATAATCA
. : . : . : . : . : . :
rJMSF013J11+ GCTTCCCGAGTTTATCCAAAGGTGGAATTTGTTCAAGTACAAGCTGGATAAAACAGTTTC
rJMSF011G23+ GCTTCCCGAGTTTATCCAAAGGNGGAATTTGTTCAAGTACAAGCTGGATAAAACAGTTTC
____________________________________________________________
consensus GCTTCCCGAGTTTATCCAAAGGTGGAATTTGTTCAAGTACAAGCTGGATAAAACAGTTTC
. : . : . : . : . : . :
rJMSF013J11+ GGCTTTGTCNCATTTCGATTTCGAGATGGCGTTATATTACCTAAGGTCGTCAGATCATGA
rJMSF011G23+ GGCTTTGTCNCATTTCGATTTCGAGANGGCGTTATATTACCTAAGGTCGTCAGATCNTGA
rJMSF008E07+ TATTACCTAAGGTCGTCAGATCNTGA
rJMFF003G11+ TATTACCTAAGGTCGTCAGATCATGA
____________________________________________________________
consensus GGCTTTGTCNCATTTCGATTTCGAGATGGCGTTATATTACCTAAGGTCGTCAGATCATGA
. : . : . : . : . : . :
rJMSF013J11+ NATATATGCCATTCACTCTCTTGTTTATCATGCTTCCCAAGATTTGGAGGCGTCGCTCGT
rJMSF011G23+ NANATATGCCATTCACTNTCTTGTTTATCATGCTTCCCAAGATTTGGNGGNGTCGCTNGT
rJMSF008E07+ NANATATGCCNTTCNCTNTCTTGTTTATCATGCTTCCCAAGATTTGGNGGNGTCGCTNGT
rJMFF003G11+ NATATATGCCATTCNCTNTNTTGTTTATCATGCTTCCCAAGATTTGGAGGNGTCGCTNGT
____________________________________________________________
consensus NATATATGCCATTCACTCTCTTGTTTATCATGCTTCCCAAGATTTGGAGGCGTCGCTCGT
. : . : . : . : . : . :
rJMSF013J11+ NTGCTTTAAGGACCCACCGTTTCCATGGATGTCGGTTTCTATGTCTCTCGGGATTTTAAT
rJMSF011G23+ TTGCTTTAAGGACCCNCCGTTTCCATGGANGTCGGTTTNTATGTCTCTCGGGATTTTAAT
rJMSF008E07+ TTGCTTTAAGGACCCNCCGTTTCCNTGGANGTCGGTTTNTATGTCTCTCGGGATTTTAAT
rJMFF003G11+ TTGCTTTAAGGACCCCCCGTTTCCATGGATGTCGGTTTNTANGTNTNTCGGGATTTTAAT
____________________________________________________________
consensus TTGCTTTAAGGACCCCCCGTTTCCATGGATGTCGGTTTCTATGTCTCTCGGGATTTTAAT
. : . : . : . : . : . :
rJMSF013J11+ TGGTCTTGTCTATATTGTCGCAAAGAGGGACAAGTTATTTCGGAACAAGAGAAAACAGTT
rJMSF011G23+ TGGTCTTGTCTATATTGTCGCAAAGAGGGACAAGTTATTTCGGAACAAGAGAAAACAGTT
rJMSF008E07+ TGGTCTTGTCTANATTGTCGCAAAGNGGGACAAGTTATTTCGGAACAAGNGAAAACAGTT
rJMFF003G11+ TGGTNTTGTNTATATTGTCGCAAAGAGGGACAAGTTATTTNGGAACAAGAGAAAACAGTT
____________________________________________________________
consensus TGGTCTTGTCTATATTGTCGCAAAGAGGGACAAGTTATTTCGGAACAAGAGAAAACAGTT
. : . : . : . : . : . :
rJMSF013J11+ TTAGAGCATCAGGTTTGGTGAGATTCGAATTGATGATATGACAGATGTTTTGAAATCTTG
rJMSF011G23+ TTAGAGCATCAGGTTTGGNGAGATTCGAATTGATGATATGACAGATGTTTTGAAATCTTG
rJMSF008E07+ TTAGAGCNTCAGGTTTGGNGNGATTCGAATTGATGATATGACAGATGTTTTGAAATNTTG
rJMFF003G11+ TTAGAGCATCAGGTTTGGNGAGATTNGAATTGATGATATGACAGATGTTTTGAAATNTTG
____________________________________________________________
consensus TTAGAGCATCAGGTTTGGTGAGATTCGAATTGATGATATGACAGATGTTTTGAAATCTTG
. : . : . : . : . : . :
rJMSF013J11+ ACTTCAGNGGTCAGAAAGAGGTACCTCAGTTTTCACTAGCG-TTTTTTTTTTTAATGTAT
rJMSF011G23+ ACTTCAGNGGTCAGAAAGAGGTACCTCAGTTTTCACTAGCGTTTTTTTTTTTTAATGTAT
rJMSF008E07+ ACTTCAGNGGTCAGAAAGNGGTACCTCAGTTTTCNCTAGNGTTTTTTTTTTTTAATGTAT
rJMFF003G11+ ACTTCAGNGGTCAGAAAGAGGTACCTCAGTTTTCACTAGNGTTTTTTTTTTTTAATGTAT
____________________________________________________________
consensus ACTTCAGNGGTCAGAAAGAGGTACCTCAGTTTTCACTAGCGTTTTTTTTTTTTAATGTAT
. : . : . : . : . : . :
rJMSF013J11+ TTGTATGTGCTTGCCTTTCCTTATGAATGCAAGTTCCATGCCTTTCTGGCCT
rJMSF011G23+ TTGTATGNGCTTGCCTTTCCTTATGAATGCAAGTTCCATGCCTTTCTGGCCTTCCCATTT
rJMSF008E07+ TTGTATGTGCTTGCCTTTCCTTATGAATGCAAGTTCCATGCCTTTCTGGCCTTCCCATTT
rJMFF003G11+ TTGTATGTGCTTGCCTTTCCTTATGAATGCAAGTTCCATGCCTTTCTGGCCTTCCCATTT
____________________________________________________________
consensus TTGTATGTGCTTGCCTTTCCTTATGAATGCAAGTTCCATGCCTTTCTGGCCTTCCCATTT
. : . : . : . : . : . :
rJMSF011G23+ GGGACGTCTTGTAATCAATCT
rJMSF008E07+ GGGACGTCTTGTAATCAATCTTGAAGCAAAATATTACAGTAAATGGGGCCTTTCTTACTC
rJMFF003G11+ GGGACGTCTTGTAATCAATCTTGAAGCAAAATATTACAGTAAATGGGGCCTTTCTTACTC
____________________________________________________________
consensus GGGACGTCTTGTAATCAATCTTGAAGCAAAATATTACAGTAAATGGGGCCTTTCTTACTC
. : . : . : . : . : . :
rJMSF008E07+ AAATAGGTTCTGAATCCAACCTCCAAAAAC
rJMFF003G11+ AAATAGGTTCTGAATCCAACCTCCAAAAACAATGTGTGCTTGTTTAATGGATGGAAAAAT
____________________________________________________________
consensus AAATAGGTTCTGAATCCAACCTCCAAAAACAATGTGTGCTTGTTTAATGGATGGAAAAAT