Contig 003935:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003F24Sequence547003578 (2)ref|XP_009768353.1|1e-42PREDICTED: probable protein phosphatase 2C 76 isoform X1 [Nicotiana sylvestris]708003935 (2)ref|XP_009768358.1|4e-61PREDICTED: probable protein phosphatase 2C 76 isoform X3 [Nicotiana sylvestris]
JMSF010K06Sequence408003578 (2)ref|XP_009768353.1|7e-09PREDICTED: probable protein phosphatase 2C 76 isoform X1 [Nicotiana sylvestris]743003935 (2)ref|XP_009768358.1|5e-62PREDICTED: probable protein phosphatase 2C 76 isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF010K06+                                         ATCTATATGTTGCCAACGTTGGTGATTCA
                      ____________________________________________________________
consensus                                            ATCTATATGTTGCCAACGTTGGTGATTCA
 
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rJMSF010K06+          AGAACCATGTGTCAAAAAAAGGAAAAGCAATTCCTCTCTCTCAGGATCATAAACCAAATA
rJMFF003F24+                      CAAAAAAAGGAAAAGCAATTCNTCTCTCTCAGGATCATAAACCAAATA
                      ____________________________________________________________
consensus             AGAACCATGTGTCAAAAAAAGGAAAAGCAATTCCTCTCTCTCAGGATCATAAACCAAATA
 
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rJMSF010K06+          GAAGTGATGAGAGAAAGAGGATTGAAAATGCTGGAGGTGTTATTATGTGGGCAGGCACTT
rJMFF003F24+          GAAGTGATGAGAGAAAGAGGATTGAAAATGCTGGAGGTGTTATTATGTGGGCAGGCACTT
                      ____________________________________________________________
consensus             GAAGTGATGAGAGAAAGAGGATTGAAAATGCTGGAGGTGTTATTATGTGGGCAGGCACTT
 
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rJMSF010K06+          GGAGAGTTGGAGGAGTCTTGGCAATGTCCCGTGCCTTTGGTAATCGAATGCTGAAGCAAT
rJMFF003F24+          GGAGAGTTGGAGGAGTCTTGGCAATGTCCCGTGCCTTTGGTAATCGAATGCTGAAGCAAT
                      ____________________________________________________________
consensus             GGAGAGTTGGAGGAGTCTTGGCAATGTCCCGTGCCTTTGGTAATCGAATGCTGAAGCAAT
 
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rJMSF010K06+          ATGTTGTGGCTGAACCTGAGATTCAGGAAGAAGTCATTGATGAAGAATTAGAATTGCTTG
rJMFF003F24+          ATGTTGTGGCTGAACCTGAGATTCAGGAAGAAGTCATTGATGAAGAATTAGAATTGCTTG
                      ____________________________________________________________
consensus             ATGTTGTGGCTGAACCTGAGATTCAGGAAGAAGTCATTGATGAAGAATTAGAATTGCTTG
 
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rJMSF010K06+          TCCTGGCTAGTGATGGACTCTGGGATGTAGTACCCAATGAGGATGCCGTTTCACTAGCAG
rJMFF003F24+          TCCTGGCTAGTGATGGACTCTGGGATGTAGTACCCAATGAGGATGCCGTTTCACTAGCAG
                      ____________________________________________________________
consensus             TCCTGGCTAGTGATGGACTCTGGGATGTAGTACCCAATGAGGATGCCGTTTCACTAGCAG
 
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rJMSF010K06+          AGTCGGAAGAATCACCCGAAGCAGCTGCGAGGAAGCTGACGGAGACTGCTTTTACCCGTG
rJMFF003F24+          AGTCGGAAGAATCACCCGAAGCAGCTGCGAGGAAGCTGACGGAGACTGCTTTTACCCGTG
                      ____________________________________________________________
consensus             AGTCGGAAGAATCACCCGAAGCAGCTGCGAGGAAGCTGACGGAGACTGCTTTTACCCGTG
 
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rJMSF010K06+          GCAGTGCTGACAATATCACCTGCATCGTGGTGAAGTTCCATCACAAGAAGGCGGAGCCTG
rJMFF003F24+          GCAGTGCTGACAATATCACCTGCATCGTGGTGAAGTTCCATCACAAGAAGGCGGAGCCTG
                      ____________________________________________________________
consensus             GCAGTGCTGACAATATCACCTGCATCGTGGTGAAGTTCCATCACAAGAAGGCGGAGCCTG
 
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rJMSF010K06+          AGGTAAGCCAACAGGAAGCAAAGAGCTTGTCGACTTCACCTGCACATAATTTTTAAATTA
rJMFF003F24+          AGGTAAGCCAACAGGAAGCAAAGAGCTTGTCGACTTCACCTGCACATAATTTTTAAATTA
                      ____________________________________________________________
consensus             AGGTAAGCCAACAGGAAGCAAAGAGCTTGTCGACTTCACCTGCACATAATTTTTAAATTA
 
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rJMSF010K06+          TGTAGGCAATCTCGTGCAAAGTGCTAGCTTAGCTCGATGCACCAGCAGCTGGTTTCAACG
rJMFF003F24+          TGTAGGCAATCTCGTGCAAAGTGCTAGCTTAGCTCGATGCACCAGCAGCTGGTTTCAACG
                      ____________________________________________________________
consensus             TGTAGGCAATCTCGTGCAAAGTGCTAGCTTAGCTCGATGCACCAGCAGCTGGTTTCAACG
 
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rJMSF010K06+          CAATGGAGGCTGCCATGCTGCAGTTATTTGTTTATTCATTTTTCATTTTCTCTTTATAAT
rJMFF003F24+          CAATGGAGGCTGCCATGCTGCAGTTATTTGTTTATTCATTTTTCATTTTCTCTTTATAAT
                      ____________________________________________________________
consensus             CAATGGAGGCTGCCATGCTGCAGTTATTTGTTTATTCATTTTTCATTTTCTCTTTATAAT
 
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rJMSF010K06+          TTAATGTTCTTGTTTTCGTCTGTATTTGGACCTGGTGTATCTGCTTGTGATGGTTTGTGT
rJMFF003F24+          TTAATGTTCTTGTTTTCGTCTGTATTTGGACCTGGTGTATCTGCTTGTGATGGTTTGTGT
                      ____________________________________________________________
consensus             TTAATGTTCTTGTTTTCGTCTGTATTTGGACCTGGTGTATCTGCTTGTGATGGTTTGTGT
 
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rJMSF010K06+          TTCTCCCCTTCTGTAGAGTTAATATCTGATCAGTTAAAACATAACCAGCGGGAT      
rJMFF003F24+          TTCTCCCCTTCTGTAGAGTTAATATCTGATCAGTTAAAACATAACCAGCGGGATGTAGTT
                      ____________________________________________________________
consensus             TTCTCCCCTTCTGTAGAGTTAATATCTGATCAGTTAAAACATAACCAGCGGGATGTAGTT