| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002I09 | Sequence | 588 | 003933 (4) | ref|XP_011081060.1| | 2e-82 | PREDICTED: PGR5-like protein 1A, chloroplastic [Sesamum indicum] ref|XP_01108106 | 734 | 003933 (4) | ref|XP_009615125.1| | 3e-91 | PREDICTED: PGR5-like protein 1A, chloroplastic [Nicotiana tomentosiformis] |
| JMFS165A11 | Sequence | 601 | 003933 (4) | ref|XP_011081060.1| | 6e-89 | PREDICTED: PGR5-like protein 1A, chloroplastic [Sesamum indicum] ref|XP_01108106 | |||||
| JMSF040N03 | Sequence | 627 | 022208 | ref|XP_011081060.1| | 3e-88 | PREDICTED: PGR5-like protein 1A, chloroplastic [Sesamum indicum] ref|XP_01108106 | 911 | 003933 (4) | ref|XP_009615125.1| | 7e-137 | PREDICTED: PGR5-like protein 1A, chloroplastic [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFF002I09- GATATTTCCGCCACCATTTCTCTCCCACCACC
JMFS165A11- ACCATTTCTCTCCCACCACC
____________________________________________________________
consensus GATATTTCCGCCACCATTTCTCTCCCACCACC
. : . : . : . : . : . :
JMFF002I09- GCCACCGCTATCGCCGCCGCAAATGGCCACTAAACTTGTCTACTCTCTAACCACTCCCCG
JMFS165A11- GCCACCGCTATCGCCGCCGCAAATGGCCACTAAACTTGTCTACTCTCTAACCACTCCCCG
____________________________________________________________
consensus GCCACCGCTATCGCCGCCGCAAATGGCCACTAAACTTGTCTACTCTCTAACCACTCCCCG
. : . : . : . : . : . :
JMFF002I09- GTTTCTTCATGCATCGTTTAAAAGACCATTCATTTCTGCGCCTTCCGCTTCTTTGCCTTC
JMFS165A11- GTTTCTTCATGCATCGTTTAAAAGACCATTCATTTCTGCGCCTTCCGCTTCTTTGCCTTC
____________________________________________________________
consensus GTTTCTTCATGCATCGTTTAAAAGACCATTCATTTCTGCGCCTTCCGCTTCTTTGCCTTC
. : . : . : . : . : . :
JMFF002I09- TGCGTCTAGGCTCCCGTTGATTTATTTTGCTGGAAGGAAGATCTCCGTTCGCCGGAGGTT
JMFS165A11- TGCGTCTAGGCTCCCGTTGATTTATTTTGCTGGAAGGAAGATCTCCGTTCGCCGGAGGTT
____________________________________________________________
consensus TGCGTCTAGGCTCCCGTTGATTTATTTTGCTGGAAGGAAGATCTCCGTTCGCCGGAGGTT
. : . : . : . : . : . :
JMFF002I09- TTTGGTTCTATGCCCTAAGGCTACTACCGATCAGCCAGGTCAGGTCCAGGAAGATGAAGT
JMFS165A11- TTTGGTTCTATGCCCTAAGGCTACTACCGATCAGCCAGGTCAGGTCCAGGAAGATGAAGT
____________________________________________________________
consensus TTTGGTTCTATGCCCTAAGGCTACTACCGATCAGCCAGGTCAGGTCCAGGAAGATGAAGT
. : . : . : . : . : . :
JMFF002I09- TGAAGTTGACAGTAATGTCTTACCCTATTGCAGCATAGACAGGAAAGAGAAGAAGTCTCT
JMFS165A11- TGAAGTTGACAGTAATGTCTTACCCTATTGCAGCATAGACAGGAAAGAGAAGAAGTCTCT
rJMSF040N03+ GAGAAGAAGTCTCT
____________________________________________________________
consensus TGAAGTTGACAGTAATGTCTTACCCTATTGCAGCATAGACAGGAAAGAGAAGAAGTCTCT
. : . : . : . : . : . :
JMFF002I09- GGGCGAGATGGAACAAGATTTTCTTCAAGCATTACAAGCCTTCTATTATGAAGGAAAGGC
JMFS165A11- GGGCGAGATGGAACAAGATTTTCTTCAAGCATTACAAGCCTTCTATTATGAAGGAAAGGC
rJMSF040N03+ GGGCGAGATGGAACAAGATTTTCTTCAAGCATTACAAGCCTTCTATTATGAAGGAAAGGC
____________________________________________________________
consensus GGGCGAGATGGAACAAGATTTTCTTCAAGCATTACAAGCCTTCTATTATGAAGGAAAGGC
. : . : . : . : . : . :
JMFF002I09- TATCATGTCGAATGAAGAGTTTGATAACCTCAAGGAAGAGTTAATGTGGGAAGGGAGCAG
JMFS165A11- TATCATGTCAAATGAAGAGTTTGATAACCTCAAGGAAGAGTTAATGTGGGAAGGGAGCAG
rJMSF040N03+ TATCATGTCAAATGAAGAGTTTGATAACCTCAAGGAAGAGTTAATGTGGGAAGGGAGCAG
____________________________________________________________
consensus TATCATGTCAAATGAAGAGTTTGATAACCTCAAGGAAGAGTTAATGTGGGAAGGGAGCAG
. : . : . : . : . : . :
JMFF002I09- TGTTGTCATGCTAAGTGCTGATGAACAGAGATTTTTGGAAGCTTCTATGGCATATGTTGC
JMFS165A11- TGTTGTCATGCTAAGTGCTGATGAACAGAGATTTTTGGAAGCTTCTATGGCATATGTTGC
rJMSF040N03+ TGTTGTCATGCTAAGTGCTGATGAACAGAGATTTTTGGAAGCTTCTATGGCATATGTTGC
rJMFF002I09+ ATGGCATATGTTGC
____________________________________________________________
consensus TGTTGTCATGCTAAGTGCTGATGAACAGAGATTTTTGGAAGCTTCTATGGCATATGTTGC
. : . : . : . : . : . :
JMFF002I09- AGGGACACCGATTATGTCAGACAAAGAGTTTGACAAACTAAAGATGAAACTTAAGATGGA
JMFS165A11- AGGGACACCGATTATGTCAGACAAAGAGTTTGACAAACTAAAGATGAAACTTAAGATGGA
rJMSF040N03+ AGGGACACCGATTATGTCAGACAAAGAGTTTGACAAACTAAAGATGAAACTTAAGATGGA
rJMFF002I09+ AGGGACACCGATTATGTCAGACAAAGAGTTTGACAAACTAAAGATGAAACTTAAGATGGA
____________________________________________________________
consensus AGGGACACCGATTATGTCAGACAAAGAGTTTGACAAACTAAAGATGAAACTTAAGATGGA
. : . : . : . : . : . :
JMFF002I09- TGGTAGTGATATTGTG
JMFS165A11- TGGTAGTGATATTGTGGTTGAGGGTCCACGTTGCAGTCTTC
rJMSF040N03+ TGGTAGTGATATTGTGGTTGAGGGTCCACGTTGCAGTCTTCGCAGTAGGAAGGTTTACAG
rJMFF002I09+ TGGTAGTGATATTGTGGTTGAGGGTCCACGTTGCAGTCTTCGCAGTAGGAAGGTTTACAG
____________________________________________________________
consensus TGGTAGTGATATTGTGGTTGAGGGTCCACGTTGCAGTCTTCGCAGTAGGAAGGTTTACAG
. : . : . : . : . : . :
rJMSF040N03+ TGACCTCTCGGTGGACTATCTGAAGATGTTCTTACTTAATGTTCCTGCTGCTGTTGTAGC
rJMFF002I09+ TGACCTCTCGGTGGACTATCTGAAGATGTTCTTACTTAATGTTCCTGCTGCTGTTGTAGC
____________________________________________________________
consensus TGACCTCTCGGTGGACTATCTGAAGATGTTCTTACTTAATGTTCCTGCTGCTGTTGTAGC
. : . : . : . : . : . :
rJMSF040N03+ GCTGGGATTGTTCTTCTTCCTTGATGACTTGACTGGATTCGAAATCACTTACCTTTTGGA
rJMFF002I09+ GCTGGGATTGTTCTTCTTCCTTGATGACTTGACTGGATTCGAAATCACTTACCTTTTGGA
____________________________________________________________
consensus GCTGGGATTGTTCTTCTTCCTTGATGACTTGACTGGATTCGAAATCACTTACCTTTTGGA
. : . : . : . : . : . :
rJMSF040N03+ GCTTCCAGAGCCATTCAGTTTCATCTTCACGTGGTTTGCGGCTTTGCCTTTCATTCTGTG
rJMFF002I09+ GCTTCCAGAGCCATTCAGTTTCATCTTCACGTGGTTTGCGGCTTTGCCTTTCATTCTGTG
____________________________________________________________
consensus GCTTCCAGAGCCATTCAGTTTCATCTTCACGTGGTTTGCGGCTTTGCCTTTCATTCTGTG
. : . : . : . : . : . :
rJMSF040N03+ GCTATCTTTTTCAATCACGGGATTCATTGTCAAAGATTTCCTGATTTTAAAGGGTCCCTG
rJMFF002I09+ GCTATCTTTTTCAATCACGGGATTCATTGTCAAAGATTTCCTGATTTTAAAGGGTCCCTG
____________________________________________________________
consensus GCTATCTTTTTCAATCACGGGATTCATTGTCAAAGATTTCCTGATTTTAAAGGGTCCCTG
. : . : . : . : . : . :
rJMSF040N03+ TCCAAACTGTGGTACGGAAAACACTTCATTTTTTGGTACCATATTGTCAGTATCTAGCGG
rJMFF002I09+ TCCAAACTGTGGTACGGAAAACACTTCATTTTTTGGTACCATATTGTCAGTATCTAGCGG
____________________________________________________________
consensus TCCAAACTGTGGTACGGAAAACACTTCATTTTTTGGTACCATATTGTCAGTATCTAGCGG
. : . : . : . : . : . :
rJMSF040N03+ TGGTTCCAGCAACAACGTCAAATGCACAAATTGTGGGACAGACATGGTATATGATTCAAG
rJMFF002I09+ TGGTTCCAGCAACAACGTCAAATGCACAAATTGTGGGACAGACATGGTATATGATTCAAG
____________________________________________________________
consensus TGGTTCCAGCAACAACGTCAAATGCACAAATTGTGGGACAGACATGGTATATGATTCAAG
. : . : . : . : . : . :
rJMSF040N03+ CACGCGTTTGATTACATTGCCTGAAGGAAGTAGTGCATGAGAAAGATATCGGGAAAATGG
rJMFF002I09+ CACGCGTTTGATTACATTGCCTGGAGGAAGTAGTGCATGAGAAAGATATCGGGAAAATGG
____________________________________________________________
consensus CACGCGTTTGATTACATTGCCTGGAGGAAGTAGTGCATGAGAAAGATATCGGGAAAATGG
. : . : . : . : . : . :
rJMSF040N03+ ATAGCAGAAGTGCGAGTTGGTCGCATGATATAGCAGATTATGTATTTGGATGAATGTATG
rJMFF002I09+ ATAGCAGAAGTGCGAGTTGGTCGCATGATATAGCAGATTATGTATTTGGATGAATGTATG
____________________________________________________________
consensus ATAGCAGAAGTGCGAGTTGGTCGCATGATATAGCAGATTATGTATTTGGATGAATGTATG
. : . : . : . : . : . :
rJMSF040N03+ AGATGAGAAATAACTGGTGTCTGAGATGTTAGATACTGTTATATGGTTTGTATGTGAATG
rJMFF002I09+ AGATGAGAAATAACTGGTGTCTGAGATGTTAGATACTGTTATATGGTTTGTATGTGAATG
____________________________________________________________
consensus AGATGAGAAATAACTGGTGTCTGAGATGTTAGATACTGTTATATGGTTTGTATGTGAATG
. : . : . : . : . : . :
rJMSF040N03+ TGTAGCTATATCATGTATATTCATAACTAAAGAGATGGAAAAATCTCG
rJMFF002I09+ TGTAGCTATATCATGTATATTCATAACTAAAGAGATGGAAAAATCTCGTAGCTCAAATTT
____________________________________________________________
consensus TGTAGCTATATCATGTATATTCATAACTAAAGAGATGGAAAAATCTCGTAGCTCAAATTT