Contig 003929:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001H22Sequence534007271 (9)ref|XP_004953107.1|2e-06PREDICTED: uncharacterized protein At4g06744-like [Setaria italica]783003929 (9)ref|XP_006360245.1|8e-17PREDICTED: uncharacterized protein At4g06744-like, partial [Solanum tuberosum]
JMSF008N24Sequence350007271 (9)730003929 (9)ref|XP_006360245.1|4e-25PREDICTED: uncharacterized protein At4g06744-like, partial [Solanum tuberosum]
JMSF017F04Sequence243007271 (9)709003929 (9)ref|XP_006360245.1|2e-38PREDICTED: uncharacterized protein At4g06744-like, partial [Solanum tuberosum]
JMSF017N19Sequence520007271 (9)ref|XP_009588943.1|4e-10PREDICTED: uncharacterized protein At4g06744-like [Nicotiana tomentosiformis]715003929 (9)ref|XP_006360245.1|1e-54PREDICTED: uncharacterized protein At4g06744-like, partial [Solanum tuberosum]
JMSF036O16Sequence677007271 (9)ref|XP_009588943.1|6e-34PREDICTED: uncharacterized protein At4g06744-like [Nicotiana tomentosiformis]709003929 (9)ref|XP_006360245.1|4e-51PREDICTED: uncharacterized protein At4g06744-like, partial [Solanum tuberosum]
JMSF037C16Sequence673007271 (9)ref|XP_009588943.1|5e-34PREDICTED: uncharacterized protein At4g06744-like [Nicotiana tomentosiformis]695003929 (9)ref|XP_006360245.1|6e-52PREDICTED: uncharacterized protein At4g06744-like, partial [Solanum tuberosum]
JMSF042F11Sequence780007271 (9)ref|XP_009588943.1|2e-38PREDICTED: uncharacterized protein At4g06744-like [Nicotiana tomentosiformis]753003929 (9)ref|XP_006360245.1|8e-57PREDICTED: uncharacterized protein At4g06744-like, partial [Solanum tuberosum]
JMSF044I16Sequence746007271 (9)ref|XP_009588943.1|6e-36PREDICTED: uncharacterized protein At4g06744-like [Nicotiana tomentosiformis]698003929 (9)ref|XP_006360245.1|6e-52PREDICTED: uncharacterized protein At4g06744-like, partial [Solanum tuberosum]
JMSF046P03Sequence720007271 (9)ref|XP_009588943.1|7e-43PREDICTED: uncharacterized protein At4g06744-like [Nicotiana tomentosiformis]681003929 (9)ref|XP_006360245.1|1e-52PREDICTED: uncharacterized protein At4g06744-like, partial [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF044I16+                                                                TCCTTA
rJMSF037C16+                                                                TCCTTA
rJMSF046P03+                                                            GTCTTCCTTA
rJMSF017N19+                                                    CTCCGGTTGTCTTCCTTA
rJMSF036O16+                                                    CTCCGGTTGTCTTCCTTA
rJMSF042F11+                                     CTTGAACAACAAACTCTCCGGTTGTCTTCCTTA
                      ____________________________________________________________
consensus                                        CTTGAACAACAAACTCTCCGGTTGTCTTCCTTA
 
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rJMSF044I16+          CGAGATTGGGTTACTCAAAAACTCGACAGTTTTCGACGCCAGCATTAACCAATTGACAGG
rJMSF037C16+          CGAGATTGGGTTACTCAAAAACTCGACAGTTTTCGACGCCAGCATTAACCAATTGACAGG
rJMSF046P03+          CGAGATTGGGTTACTCAAAAACTCGACAGTTTTCGACGCCAGCATTAACCAATTGACAGG
rJMSF017N19+          CGAGATTGGGTTACTCAAAAACTCGACAGTTTTCGACGCCAGCATTAACCAATTGACAGG
rJMSF036O16+          CGAGATTGGGTTACTCAAAAACTCGACAGTTTTNGACGCCAGCATTAACCAATTGACAGG
rJMSF042F11+          CGAGATTGGGTTACTCAAAAACTCGACAGTTTTCGACGCCAGCATTAACCAATTGACAGG
                      ____________________________________________________________
consensus             CGAGATTGGGTTACTCAAAAACTCGACAGTTTTCGACGCCAGCATTAACCAATTGACAGG
 
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rJMSF044I16+          TCCCATTCCACAATCCTTTGGGTGCCTGGAAAAACTGGAGATTCTGAACCTGACAAACAA
rJMSF037C16+          TCCCATTCCACAATCCTTTGGGTGCCTGGAAAAACTGGAGATTCTGAACCTGACAAACAA
rJMSF046P03+          TCCCATTCCACAATCCTTTGGGTGCCTGGAAAAACTGGAGATTCTGAACCTGACAAACAA
rJMSF017N19+          TCCCATTCCACAATCCTTTGGGTGCCTGGAAAAACTGGAGATTCTGAACCTGACAAACAA
rJMSF036O16+          TCCCATTCCACAATCCTTTGGGTGCNTGGAAAAACTGGAGATTCTGAACCTGACAAACAA
rJMSF042F11+          TCCCATTCCACAATCCTTTGGGTGCCTGGAAAAACTGGAGATTCTGAACCTGACAAACAA
rJMSF017F04+            CCATTCCACAATCCTTTGGGTGCCTGGAAAAACTGGAGATTCTGAACCTGACAAACAA
rJMFF001H22+                                                                   CAA
                      ____________________________________________________________
consensus             TCCCATTCCACAATCCTTTGGGTGCCTGGAAAAACTGGAGATTCTGAACCTGACAAACAA
 
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rJMSF044I16+          TCAGCTTTATGGGTCTG-TTCCAGAATCTTTATGCAAGCTGAAAGATCTGGAGGAGCTGA
rJMSF037C16+          TCAGCTTTATGGGTCTG-TTCCAGAATCTTTATGCAAGCTGAAAGATCTGGAGGAGCTGA
rJMSF046P03+          TCAGCTTTATGGGTCTG-TTCCAGAATCTTTATGCAAGCTGAAAGATCTGGAGGAGCTGA
rJMSF017N19+          TCAGCTTTATGGGTCTG-TTCCAGAATCTTTATGCAAGCTGAAAGATCTGGAGGAGCTGA
rJMSF036O16+          TCAGCTTTATGGGTCTG-TTCCAGAATCNTTATGCAAGCTGAAAGATCTGGAGGAGCTGA
rJMSF042F11+          TCAGCTTTATGGGTCTG-TTCCAGAATCTTTATGCAAGCTGAAAGATCTGGAGGAGCTGA
rJMSF017F04+          TCAGCTTTATGGGTCTG-TTCCAGAATCTTTATGCAAGCTGAAAGATCTGGAGGAGCTGA
rJMSF008N24+                           GTTCCAGAATCTTTATGCAAGCTGAAAGATCTGGAGGAGCTGA
rJMFF001H22+          TCAGCTTTATGGGTCTGTTCCCAGAATCTTTATGCAAGCTGAAAGATCTGGAGGAGCTGA
                      ____________________________________________________________
consensus             TCAGCTTTATGGGTCTG-TTCCAGAATCTTTATGCAAGCTGAAAGATCTGGAGGAGCTGA
 
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rJMSF044I16+          GTTTGAGCGGCAACTATTTTACCCAGA-TTGGGCCGGAATGCAGAAACCTTCTGGAGAAG
rJMSF037C16+          GTTTGAGCGGCAACTATTTTACCCAGA-TTGGGCCGGAATGCAGAAACCTTCTGGAGAAG
rJMSF046P03+          GTTTGAGCGGCAACTATTTTACCCAGA-TTGGGCCGGAATGCAGAAACCTTCTGGAGAAG
rJMSF017N19+          GTTTGAGCGGCAACTATTTTACCCAGA-TTGGGCCGGAATGCAGAAACCTTCTGGAGAAG
rJMSF036O16+          GTNTGAGCGGCAACTATTTTACCCAGA-TTGGGCCGGAATGCAGAAACCTTCTGGAGAAG
rJMSF042F11+          GTTTGAGCGGCAACTATTTTACCCAGA-TTGGGCCGGAATGCAGAAACCTTCTGGAGAAG
rJMSF017F04+          GTTTGAGCGGCAACTATTTTACCCAGA-TTGGGCCGGAATGCAGAAACCTTCTGGAGAAG
rJMSF008N24+          GTTTGAGCGGCAACTATTTTACCCAGA-TTGGGCCGGAATGCAGAAACCTTCTGGAGAAG
rJMFF001H22+          GTTTGAGCGGCGACTATTTTACCCAGATTTGGGCCGGAATGCAGAAACCTTCTGGAGAAG
                      ____________________________________________________________
consensus             GTTTGAGCGGCAACTATTTTACCCAGA-TTGGGCCGGAATGCAGAAACCTTCTGGAGAAG
 
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rJMSF044I16+          AAGGTTCTTGATATAGACAACAACTGCATATTGGATCTTCCCAATCAGAGAAGTGCCCAG
rJMSF037C16+          AAGGTTCTTGATATAGACAACAACTGCATATTGGATCTTCCCAATCAGAGAAGTGCCCAG
rJMSF046P03+          AAGGTTCTTGATATAGACAACAACTGCATATTGGATCTTCCCAATCAGAGAAGTGCCCAG
rJMSF017N19+          AAGGTTCTTGATATAGACAACAACTGCATATTGGATCTTCCCAATCAGAGAAGTGCCCAG
rJMSF036O16+          AAGGTTCTTGATATAGACAACANCTGCATATNGGATCTTCCCAATCAGAGAAGTGCCCAG
rJMSF042F11+          AAGGTTCTTGATATAGACAACAACTGCATATTGGATCTTCCCAATCAGAGAAGTGCCCAG
rJMSF017F04+          AAGGTTCTTGATATAGACAACAACTGCATATTGGATCTTCCCAATCAGAGAAGTGCCCAG
rJMSF008N24+          AAGGTTCTTGATATAGACAACAACTGCATATTGGATCTTCCCAATCAGAGAAGTGCCCAG
rJMFF001H22+          AAGGTTCTTGATATAGACAACAACTGCATATTGGATCTTCCCAATCAGAGAAGTGCCCAG
                      ____________________________________________________________
consensus             AAGGTTCTTGATATAGACAACAACTGCATATTGGATCTTCCCAATCAGAGAAGTGCCCAG
 
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rJMSF044I16+          GTCTGTAAAGATTTCTTCTTGCACTACCAGAAATGCCCAGACCATAAATCCTTGTTGTAT
rJMSF037C16+          GTCTGTAAAGATTTCTTCTTGCACTACCAGAAATGCCCAGACCATAAATCCTTGTTGTAT
rJMSF046P03+          GTCTGTAAAGATTTCTTCTTGCACTACCAGAAATGCCCAGACCATAAATCCTTGTTGTAT
rJMSF017N19+          GTCTGTAAAGATTTCTTCTTGCACTACCAGAAATGCCCAGACCATAAATCCTTGTTGTAT
rJMSF036O16+          GTCTGTAAAGATTTCTTCTTGCACTACCAGAAATGCCCAGACCATAAATCCTTGTTGTAT
rJMSF042F11+          GTCTGTAAAGATTTCTTCTTGCACTACCAGAAATGCCCAGACCATAAATCCTTGTTGTAT
rJMSF017F04+          GTCTGTAAAGATTTCTTCTTGCACTACCAGAAATGCCCAGACCATAAATCCTTGTTGTAT
rJMSF008N24+          GTCTGTAAAGATTTCTTCTTGCACTACCAGAAATGCCCAGACCATAAATCCTTGTTGTAT
rJMFF001H22+          GTCTGTAAAGATTTCTTCTTGCACTACCAGAAATGCCCAGACCATAAATCCTTGTTGTAT
                      ____________________________________________________________
consensus             GTCTGTAAAGATTTCTTCTTGCACTACCAGAAATGCCCAGACCATAAATCCTTGTTGTAT
 
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rJMSF044I16+          GTGCCTTGCGACATTGATGAATCTCCCAGGAAGGCAGGTCCCCATCCCCATCCTCATCGT
rJMSF037C16+          GTGCCTTGCGACATTGATGAATCTCCCAGGAAGGCAGGTCCCCATCCCCATCCTCATCGT
rJMSF046P03+          GTGCCTTGCGACATTGATGAATCTCCCAGGAAGGCAGGTCCCCATCCCCATCCTCATCGT
rJMSF017N19+          GTGCCTTGCGACATTGATGAATCTCCCAGGAAGGCAGGTCCCCATCCCCATCCTCATCGT
rJMSF036O16+          GTGCCTTGCGACATTGATGAATCTCCCAGGAAGGCAGGTCCCCATCCCCATCCTCATCGT
rJMSF042F11+          GTGCCTTGCGACATTGATGAATCTCCCAGGAAGGCAGGTCCCCATCCCCATCCTCATCGT
rJMSF017F04+          GTGCCTTGCGACATTGATGAATCTCCCAGGAAGGCAGGTCCCCATCCCCATCCTCATCGT
rJMSF008N24+          GTGCCTTGCGACATTGATGAATCTCCCAGGAAGGCAGGTCCCCATCCCCATCCTCATCGT
rJMFF001H22+          GTGCCTTGCGACATTGATGAATCTCCCAGGAAGGCAGGTCCCCATCCCCATCCTCATCGT
                      ____________________________________________________________
consensus             GTGCCTTGCGACATTGATGAATCTCCCAGGAAGGCAGGTCCCCATCCCCATCCTCATCGT
 
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rJMSF044I16+          CCTTACAAAAAACATAAAAGAGGTTCTTCAACTACCTATGCGGCCCTCAAGGTTGACAGG
rJMSF037C16+          CCTTACAAAAAACATAAAAGAGGTTCTTCAACTACCTATGCGGCCCTCAAGGTTGACAGG
rJMSF046P03+          CCTTACAAAAAACATAAAAGAGGTTCTTCAACTACCTATGCGGCCCTCAAGGTTGAC---
rJMSF017N19+          CCTTACAAAAAACATAAAAGAGGTTCTTCAACTACCTATGCGGCCCTCAAGGTTGACAGG
rJMSF036O16+          CCTTACAAAAAACATAAAAGAGGTTCTTCAACTACCTATGCGGCCCTCAAGGTTGACAGG
rJMSF042F11+          CCTTACAAAAAACATAAAAGAGGTTCTTCAACTACCTATGCGGCCCTCAAGGTTGACAGG
rJMSF017F04+          CCTTACAAAAAACATAAAAGAGGTTCTTCAACTACCTATGCGGCCCTCAAGGTTGACAGG
rJMSF008N24+          CCTTACAAAAAACATAAAAGAGGTTCTTCAACTACCTATGCGGCCCTCAAGGTTGACAGG
rJMFF001H22+          CCTTACAAAAAACATAAAAGAGGTTCTTCAACTACCTATGCGGCCCTCAAGGTTGACAGG
                      ____________________________________________________________
consensus             CCTTACAAAAAACATAAAAGAGGTTCTTCAACTACCTATGCGGCCCTCAAGGTTGACAGG
 
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rJMSF044I16+          CCATGAATGATGAATCTGCAAGTTCCACTTCTTCTGGTGTATGTATGTATGTAATTAATT
rJMSF037C16+          CCATGAATGATGAATCTGCAAGTTCCACTTCTTCTGGTGTATGTATGTATGTAATTAATT
rJMSF046P03+          CCATGAATGATGAATCTGCAAGTTCCACTTCTTCTGGTGTATGTATGTATGTAATTAATT
rJMSF017N19+          CCATGAATGATGAATCTGCAAGTTCCACTTCTTCTGGTGTATGTATGTATGTAATTAATT
rJMSF036O16+          CCATGAATGATGAATCTGCAAGTTCCACTTCTTCTGGTGTATGTATGTATGTAATTAATT
rJMSF042F11+          CCATGAATGATGAAT---CAAGTTCCACTTCTTCTGGTGTATGTATGTATGTAATTAATT
rJMSF017F04+          CCATGAATGATGAATCTGCAAGTTCCACTTCTTCTGGTGTATGTATGTATGTAATTAATT
rJMSF008N24+          CCATGAATGATGAATCTGCAAGTTCCACTTCTTCTGGTGTATGTATGTATGTAATTAATT
rJMFF001H22+          CCATGAATGATGAATCTGCAAGTTCCACTTCTTCTGGTGTATGTATGTATGTAATTAATT
                      ____________________________________________________________
consensus             CCATGAATGATGAATCTGCAAGTTCCACTTCTTCTGGTGTATGTATGTATGTAATTAATT
 
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rJMSF044I16+          ACCTCAATAGTTTCGAGTAATTATTTGGTATTGATTTTCTTGTCTCCCCACATTGGGCTT
rJMSF037C16+          ACCTCAATAGTTTCGAGTAATTATTTGGTATTGATTTTCTTGTCTCCCCACATTGGGCTT
rJMSF046P03+          ACCTCAATAGTTTCGAGTAATTATTTGGTATTGATTTTCTTGTCTCCCCACATTGGGCTT
rJMSF017N19+          ACCTCAATAGTTTCGAGTAATTATTTGGTATTGATTTTCTTGTCTCCCCACATTGGGCTT
rJMSF036O16+          ACCTCAATAGTTTCGAGTAANTATTTGGTATTGATTTTCTTGTCTCCCCACATTGGGCTT
rJMSF042F11+          ACCTCAATAGTTTCGAGTAATTATTTGGTATTGATTTTCTTGTCTCCCCACATTGGGCTT
rJMSF017F04+          ACCTCAATAGTTTCGAGTAATTATTTGGTATTGATTTTCTTGTCTCCCCACATTGGGCTT
rJMSF008N24+          ACCTCAATAGTTTCGAGTAATTATTTGGTATTGATTTTCTTGTCTCCCCACATTGGGCTT
rJMFF001H22+          ACCTCAATAGTTTCGAGTAATTATTTGGTATTGATTTTCTTGTCTCCCCACATTGGGCTT
                      ____________________________________________________________
consensus             ACCTCAATAGTTTCGAGTAATTATTTGGTATTGATTTTCTTGTCTCCCCACATTGGGCTT
 
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rJMSF044I16+          AAGCCCTACTACATAGGCAAGAACTTCATCATATTTGTAATTGTTCTTCTTTAAGGTTGT
rJMSF037C16+          AAGCCCTACTACATAGGCAAGAACTTCATCATATTTGTAATTGTTCTTCTTTAAGGTTGT
rJMSF046P03+          AAGCCCTACTACATAGGCAAGAACTTCATCATATTTGTAATTGTTCTTCTTTAAGGTTGT
rJMSF017N19+          AAGCCCTACTACATAGGCAAGAACTTCATCATATTTGTAATTGTTCTTCTTTAAGGTTGT
rJMSF036O16+          AAGCCCTACTACATAGGCAAGAACTTCATCATATTNGTAATTGTTCTTCNTTAAGGTTGT
rJMSF042F11+          AAGCCCTACTACATAGGCAAGAACTTCATCATATTTGTAATTGTTCTTCTTTAAGGTTGT
rJMSF017F04+          AAGCCCTACTACATAGGCAAGAACTTCATCATATTTGTAATTGTTCTTCTTTAAGGTTGT
rJMSF008N24+          AAGCCCTACTACATAGGCAAGAACTTCATCATATTTGTAATTGTTCTTCTTTAAGGTTGT
rJMFF001H22+          AAGCCCTACTACATAGGCAAGAACTTCATCATATTTGTAATTGTTCTTCTTTAAGGTTGT
                      ____________________________________________________________
consensus             AAGCCCTACTACATAGGCAAGAACTTCATCATATTTGTAATTGTTCTTCTTTAAGGTTGT
 
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rJMSF044I16+          TTGTAAAACTAGGTATGTATGTATTGACTTCTAA                          
rJMSF037C16+          TTGTAAAACTAGGTATGTATGTATTGACTTC                             
rJMSF046P03+          TTGTAAAACTAGGTAT                                            
rJMSF017N19+          TTGTAAAACTAGGTATGTATGTATTGACTTCTAAACTCA                     
rJMSF036O16+          TTGTAAAACTAGGTATGTATGTATNGACTTC                             
rJMSF042F11+          TTGTAAAACTAGGTATGTATGTATTGACTTCTAAACTCATAAATAATTGAAGAAT     
rJMSF017F04+          TTGTAAAACTAGGTATGTATGTATTGACTTCTAAACTCATAAATAATTGAAGAATTGGCA
rJMSF008N24+          TTGTAAAACTAGGTATGTATGTATTGACTTCTAAACTCATAAATAATTGAAGAATTGGCA
rJMFF001H22+          TTGTAAAACTAGGTATGTATGTATTGACTTCTAAACTCATAAATAATTGAAGAATTGGCA
                      ____________________________________________________________
consensus             TTGTAAAACTAGGTATGTATGTATTGACTTCTAAACTCATAAATAATTGAAGAATTGGCA
 
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rJMSF017F04+          AAAATGGTGCCTTCTTCATTGCTCAATGTAGTTTCCT                       
rJMSF008N24+          AAAATGGTGCCTTCTTCATTGCTCAATGTAGTTTCCTTGTCCAGTTCAGGCATCTATCAG
rJMFF001H22+          AAAATGGTGCCTTCTTCATTGCTCAATGTAGTTTCCTTGTCCAGTTCAGGCATCTATCAG
                      ____________________________________________________________
consensus             AAAATGGTGCCTTCTTCATTGCTCAATGTAGTTTCCTTGTCCAGTTCAGGCATCTATCAG
 
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rJMSF008N24+          AGTTTGATGCATCTATATTGATGAAAATTTGAGCTAATATATAAAGCTCGGTCACTCATA
rJMFF001H22+          AGTTTGATGCATCTATATTGATGAAAATTTGAGCTAATATATAAAGCTCGGTCACTCATA
                      ____________________________________________________________
consensus             AGTTTGATGCATCTATATTGATGAAAATTTGAGCTAATATATAAAGCTCGGTCACTCATA
 
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rJMSF008N24+          AGTTAGCTTTTGTAGTG                                           
rJMFF001H22+          AGTTAGCTTTTGTAGTGTAATTAGGACTTGTATTTATATTAGAACTACAAAAAGCCAAAG
                      ____________________________________________________________
consensus             AGTTAGCTTTTGTAGTGTAATTAGGACTTGTATTTATATTAGAACTACAAAAAGCCAAAG