Contig 003927:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF053A19-                                                 GACGGTCAAATTCGACTCGCAA
                      ____________________________________________________________
consensus                                                   GACGGTCAAATTCGACTCGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF053A19-           ACGAGTTTGACGGCACAACTACTCTGACCTTTGCTTCTTTCAAAAGAAAAATTTCTTCTT
                      ____________________________________________________________
consensus             ACGAGTTTGACGGCACAACTACTCTGACCTTTGCTTCTTTCAAAAGAAAAATTTCTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF053A19-           TGATTTCGCCTTCAGCTTTGCAAGAACAGGAGAGGAGCAAAGAAACAGAAATGAAAGGGG
                      ____________________________________________________________
consensus             TGATTTCGCCTTCAGCTTTGCAAGAACAGGAGAGGAGCAAAGAAACAGAAATGAAAGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF053A19-           ATTCTTGTTTGGTGCTCATGCGATCTTCGATATTGTCGGTAGTTTTCTCAGTTTTTCTCT
                      ____________________________________________________________
consensus             ATTCTTGTTTGGTGCTCATGCGATCTTCGATATTGTCGGTAGTTTTCTCAGTTTTTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF053A19+                                      GGCGCCAGCAAACTCTGGAACGAATTCTCCAA
JMSF053A19-           GCTTCATTCCAGGGTTGGCAGATGTCTCGGCGCCAGCAAACTCTGGAACGAATTCTCCAA
                      ____________________________________________________________
consensus             GCTTCATTCCAGGGTTGGCAGATGTCTCGGCGCCAGCAAACTCTGGAACGAATTCTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF053A19+          ACCATTCATCCAAGAAGTCCACCGCGCTGNTAGTCCTTGGCGTGTGCCTCGGGGTCTTAG
JMSF053A19-           ACCATTCATCCAAGAAGTCCACCGCGCTGCTAGTCCTTGGCGTGTGCCTCGGGGTCTTAG
                      ____________________________________________________________
consensus             ACCATTCATCCAAGAAGTCCACCGCGCTGCTAGTCCTTGGCGTGTGCCTCGGGGTCTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF053A19+          CCCTCGTTGGAGGGGCAGTCATCCTCTTCAAGTTTTGGCAGAAGAAGAGGAGAGAAGAAC
JMSF053A19-           CCCTCGTTGGAGGGGCAGTCATCCTCTTCAAGTTTTGGCAGAAGAAGAGGAGAGAAGAAC
                      ____________________________________________________________
consensus             CCCTCGTTGGAGGGGCAGTCATCCTCTTCAAGTTTTGGCAGAAGAAGAGGAGAGAAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF053A19+          AGCACGCCCGCCTGCTAAAGCTCTTTGAAGAAGACGATGATCTTAACGTCGAGCTGGGAA
JMSF053A19-           AGCACGCCCGCCTGCTAAAGCTCTTTGAAGAAGACGATGATCTTAACGTCGAGCTGGGAA
                      ____________________________________________________________
consensus             AGCACGCCCGCCTGCTAAAGCTCTTTGAAGAAGACGATGATCTTAACGTCGAGCTGGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF053A19+          TCTGATCCAGGTCGAACTTTCCTCATCCATAGTGTAGTTATGCGAGGTGCCCTATCGATC
JMSF053A19-           TCTGATCCAGGTCGAACTTTCCTCATCCATAGTGTAGTTATGCGAGGTGCCCTATCGATC
                      ____________________________________________________________
consensus             TCTGATCCAGGTCGAACTTTCCTCATCCATAGTGTAGTTATGCGAGGTGCCCTATCGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF053A19+          GCCAAGATTTGTTATTCTTTTCTTCTTCTTTATGTGCATTTTAGCTGCCTCTGAGGTTTA
JMSF053A19-           GCCAAGATTTGTTATTCTTTTCTTCTTCTTTATGTGCATTTTAGCTGCCTCTGAGGTTTA
                      ____________________________________________________________
consensus             GCCAAGATTTGTTATTCTTTTCTTCTTCTTTATGTGCATTTTAGCTGCCTCTGAGGTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF053A19+          CAAATCTGCATTTANCAAGTGCTTGTGGNTGTGCATAGATGAATAGCAGTATATGTAAGA
JMSF053A19-           CAAATCTGCATTTA--CAAGTCTTGTGGTTGTGCATAGATGAATAGCAGTATATGTAAGA
                      ____________________________________________________________
consensus             CAAATCTGCATTTANCCAGTTCTTGTGGTTGTGCATAGATGAATAGCAGTATATGTAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF053A19+          GTTTGCAGACAT                                                
JMSF053A19-           GTTTGCAGACATTTTTTTTTCTCANGGTTATCGAAATACCAGAATTTTATGCCAAAAAAA
                      ____________________________________________________________
consensus             GTTTGCAGACATTTTTTTTTCTCANGGTTATCGAAATACCAGAATTTTATGCCAAAAAAA