| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF033G05 | Sequence | 688 | 003926 (3) | ref|XP_006363022.1| | 1e-42 | PREDICTED: scarecrow-like transcription factor PAT1-like [Solanum tuberosum] | 735 | 001449 (3) | ref|XP_009784447.1| | 3e-131 | PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref| |
| JMSF040O19 | Sequence | 659 | 003926 (3) | ref|XP_002272334.1| | 8e-37 | PREDICTED: scarecrow-like transcription factor PAT1 [Vitis vinifera] ref|XP_0106 | 733 | 001449 (3) | ref|XP_009784447.1| | 6e-130 | PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref| |
| JMSF052P23 | Sequence | 581 | 003926 (3) | ref|XP_007215518.1| | 3e-16 | hypothetical protein PRUPE_ppa003702mg [Prunus persica] gb|EMJ16717.1| hypotheti | 803 | 001449 (3) | ref|XP_009784447.1| | 2e-142 | PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref| |
This contig is upended
. : . : . : . : . : . :
JMSF040O19+ GG
JMSF033G05+ CCATCATTTGTCTCCAGCTGTCTATTTCCGG
____________________________________________________________
consensus CCATCATTTGTCTCCAGCTGTCTATTTCCGG
. : . : . : . : . : . :
JMSF040O19+ GGACGCAATACTGCTCGGGAATGTGTTATCGTGACTCTCCAGAACATCTGAATCGGGTCC
JMSF033G05+ GGACGCAATACTGCTCGGGAATGTGTTATCGTGACTCTCCAGAACATCTGAATCGGGTCC
____________________________________________________________
consensus GGACGCAATACTGCTCGGGAATGTGTTATCGTGACTCTCCAGAACATCTGAATCGGGTCC
. : . : . : . : . : . :
JMSF040O19+ AAGCATTGCAGTTTCTAATTCCTTTAGTTTGTGGATGAAACTACTCATATCATCTGTAAT
JMSF033G05+ AAGCATTGCAGTTTCTAATTCCTTTAGTTTGTGGATGAAACTACTCATATCATCTGTAAT
____________________________________________________________
consensus AAGCATTGCAGTTTCTAATTCCTTTAGTTTGTGGATGAAACTACTCATATCATCTGTAAT
. : . : . : . : . : . :
JMSF040O19+ GCAAGACCCGCTAATAGGGGAACCATAGTTGTTGTCTGATGGGTATGAACGAGAACCCTG
JMSF033G05+ GCAAGACCCGCTAATAGGGGAACCATAGTTGTTGTCTGATGGGTATGAACGAGAACCCTG
JMSF052P23+ GAACCATAGTTGTTGTCTGATGGGTATGAACGAGAACCCTG
____________________________________________________________
consensus GCAAGACCCGCTAATAGGGGAACCATAGTTGTTGTCTGATGGGTATGAACGAGAACCCTG
. : . : . : . : . : . :
JMSF040O19+ CTGGGACATGGGGCTTCCATATAGAGCACGGCTCTCGCTCACCGAGGATGATTCCAGAGT
JMSF033G05+ CTGGGACATGGGGCTTCCATATAGAGCACGGCTCTCGCTCACCGAGGATGATTCCAGAGT
JMSF052P23+ CTGGGACATGGGGCTTCCATATAGAGCACGGCTCTCGCTCACCGAGGATGATTCCAGAGT
____________________________________________________________
consensus CTGGGACATGGGGCTTCCATATAGAGCACGGCTCTCGCTCACCGAGGATGATTCCAGAGT
. : . : . : . : . : . :
JMSF040O19+ GCAATAAAGGTTACGAGAAGCATGAACGGGGTTAGCCACATTCGTGTTGTTGTAGCTCAG
JMSF033G05+ GCAATAAAGGTTACGAGAAGCATGAACGGGGTTAGCCACATTCGTGTTGTTGTAGCTCAG
JMSF052P23+ GCAATAAAGGTTACGAGAAGCATGAACGGGGTTAGCCACATTCGTGTTGTTGTAGCTCAG
____________________________________________________________
consensus GCAATAAAGGTTACGAGAAGCATGAACGGGGTTAGCCACATTCGTGTTGTTGTAGCTCAG
. : . : . : . : . : . :
JMSF040O19+ CTCGTGGTCTAAAATTTGAAACTGAGGCAGACAATAAGGGTCAGCCTTTTGCACAGGTGG
JMSF033G05+ CTCGTGGTCTAAAATTTGAAACTGAGGCAGACAATAAGGGTCAGCCTTTTGCACAGGTGG
JMSF052P23+ CTCGTGGTCTAAAATTTGAAACTGAGGCAGACAATAAGGGTCAGCCTTTTGCACAGGTGG
____________________________________________________________
consensus CTCGTGGTCTAAAATTTGAAACTGAGGCAGACAATAAGGGTCAGCCTTTTGCACAGGTGG
. : . : . : . : . : . :
JMSF040O19+ ATAGCATAACACGTTAGACATGCCCGTTCTCCTGAGACGTTGTGCTGCTTGCATCGAGAA
JMSF033G05+ ATAGCATAACACGTTAGACATGCCCGTTCTCCTGAGACGTTGTGCTGCTTGCATCGAGAA
JMSF052P23+ ATAGCATAACACGTTAGACATGCCCGTTCTCCTGAGACGTTGTGCTGCTTGCATCGAGAA
____________________________________________________________
consensus ATAGCATAACACGTTAGACATGCCCGTTCTCCTGAGACGTTGTGCTGCTTGCATCGAGAA
. : . : . : . : . : . :
JMSF040O19+ CCAGTCTTTTTCAATGCCACTCAACTCAGCAGATTGAATCGAAGCACTAGGGATAACTCA
JMSF033G05+ CCAGTCTTTTTCAATGCCACTCAACTCAGCAGATTGAATCGAAGCACTAGGGATAACTCA
JMSF052P23+ CCAGTCTTTTTCAATGCCACTCAACTCAGCAGATTGAATCGAAGCACTAGGGATAACTCA
____________________________________________________________
consensus CCAGTCTTTTTCAATGCCACTCAACTCAGCAGATTGAATCGAAGCACTAGGGATAACTCA
. : . : . : . : . : . :
JMSF040O19+ TAAAACGAGTGCCTCCTTTTCACTCCTCGACAGTAAGAGAAGCCTCTCTGCTGAGAAACG
JMSF033G05+ TAAAACGAGTGCCTCCTTTTCACTCCTCGACAGTAAGAGAAGCCTCTCTGCTGAGAAACG
JMSF052P23+ TAAAACGAGTGCCTCCTTTTCACTCCTCGACAGTAAGAGAAGCCTCTCTGCTGAGAAACG
____________________________________________________________
consensus TAAAACGAGTGCCTCCTTTTCACTCCTCGACAGTAAGAGAAGCCTCTCTGCTGAGAAACG
. : . : . : . : . : . :
JMSF040O19+ GAAAGTATACTATATAGACGAAGGATCTCTAGTAGTAAATGGCAATGACCTTAAAATGGA
JMSF033G05+ GAAAGTATACTATATAGACGAAGGATCTCTAGTAGTAAATGGCAATGACCTTAAAATGGA
JMSF052P23+ GAAAGTATACTATATAGACGAAGGATCTCTAGTAGTAAATGGCAATGACCTTAAAATGGA
____________________________________________________________
consensus GAAAGTATACTATATAGACGAAGGATCTCTAGTAGTAAATGGCAATGACCTTAAAATGGA
. : . : . : . : . : . :
JMSF040O19+ GAATCTCCATCTCTTTGCAAGCTGCTTCTTTGACTCTTCATGACACTGCAAACC
JMSF033G05+ GAATCTCCATCTCTTTGCAAGCTGCTTCTTTGACTCTTCATGACACTGCAAACC
JMSF052P23+ GAATCTCCATCTCTTTGCAAGCTGCTTCTTTGACTCTTCATGACACTGCAAACCAAAACT
____________________________________________________________
consensus GAATCTCCATCTCTTTGCAAGCTGCTTCTTTGACTCTTCATGACACTGCAAACCAAAACT
. : . : . : . : . : . :
JMSF052P23+ CTGTAATGAGGGAAGAGAGAGTGGAGAGCAGAGCAGATGACCCTATCGGTCCTACAGACC
____________________________________________________________
consensus CTGTAATGAGGGAAGAGAGAGTGGAGAGCAGAGCAGATGACCCTATCGGTCCTACAGACC