Contig 003924:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033I12Sequence285003924 (2)emb|CDP15329.1|3e-15unnamed protein product [Coffea canephora]757012673 (2)gb|KHG01468.1|2e-68Beta-galactosidase [Gossypium arboreum]
JMSF052N01Sequence445003924 (2)emb|CDP15329.1|2e-33unnamed protein product [Coffea canephora]951012673 (2)gb|KHG01468.1|2e-67Beta-galactosidase [Gossypium arboreum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052N01+                                              TTAACCATACCAGAAATCATAGTAT
                      ____________________________________________________________
consensus                                                TTAACCATACCAGAAATCATAGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I12+                                                    TCAATAACAAAATCTAAAC
JMSF052N01+           TCCACGAAGCAATATCACGTTTAGGCAAATTGTCGAACAATTCAATAACAAAATCTAAAC
                      ____________________________________________________________
consensus             TCCACGAAGCAATATCACGTTTAGGCAAATTGTCGAACAATTCAATAACAAAATCTAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I12+           TGCCACATTTACTATACATGCAGTCCCATAAGTGCAATCCAAATAGCCCAATTTGATGAT
JMSF052N01+           TGCCACATTTACTATACATGCAGTCCCATAAGTGCAATCCAAATAGCCCAATTTGATGAT
                      ____________________________________________________________
consensus             TGCCACATTTACTATACATGCAGTCCCATAAGTGCAATCCAAATAGCCCAATTTGATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I12+           CAAATTAAAGCGTGAACTTGAAACCCCAATTCTAAATTCTGTGAGCGAATGCAAGCAGTC
JMSF052N01+           CAAATTAAAGCGTGAACTTGAAACCCCAATTCTAAATTCTGTGAGCGAATGCAAGCAGTC
                      ____________________________________________________________
consensus             CAAATTAAAGCGTGAACTTGAAACCCCAATTCTAAATTCTGTGAGCGAATGCAAGCAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I12+           AACAAAGCGACAAAGCTATACTCATTGGGTTCAATACCTGAACCTCTCAAGTCTCATCTC
JMSF052N01+           AACAAAGCGACAAAGCTATACTCATTGGGTTCAATACCTGAACCTCTCAAGTCTCATCTC
                      ____________________________________________________________
consensus             AACAAAGCGACAAAGCTATACTCATTGGGTTCAATACCTGAACCTCTCAAGTCTCATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I12+           ATAGAAGAGCTCCACGGCTTCAATTTCACGGTTGATTTTTGCAAAACCCGATATGATGGC
JMSF052N01+           ATAGAAGAGCTCCACGGCTTCAATTTCACGGTTGATTTTTGCAAAACCCGATATGATGGC
                      ____________________________________________________________
consensus             ATAGAAGAGCTCCACGGCTTCAATTTCACGGTTGATTTTTGCAAAACCCGATATGATGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I12+           CGGGGAGGAAAGAGAATCAAACACGG                                  
JMSF052N01+           CGGGGAGGAAAGAGAATCAAACACGGCGTGAGCATAATCTACAAGACCCAGTTTCAGATA
                      ____________________________________________________________
consensus             CGGGGAGGAAAGAGAATCAAACACGGCGTGAGCATAATCTACAAGACCCAGTTTCAGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052N01+           TGCGGAAATAAGAGCTTTGGACAATCNNGTGTCCTGTTCAAGCTTGAGAAAATNGGCATA
                      ____________________________________________________________
consensus             TGCGGAAATAAGAGCTTTGGACAATCNNGTGTCCTGTTCAAGCTTGAGAAAATNGGCATA