Contig 003923:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF052M05Sequence657003923 (2)ref|XP_009776588.1|4e-78PREDICTED: CASP-like protein 5A2 [Nicotiana sylvestris]941003923 (2)ref|XP_009776588.1|2e-107PREDICTED: CASP-like protein 5A2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF052M05-                                AACTAAAGCATTTTCTCTTTGGAAAGCTGGGGTTCAAA
                      ____________________________________________________________
consensus                                   AACTAAAGCATTTTCTCTTTGGAAAGCTGGGGTTCAAA
 
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rJMSF052M05-          CGGAGTAACTACAATGATGTTTTCCAGGAAAGGGATAAAACAAAAACCCACGCATGGTTT
                      ____________________________________________________________
consensus             CGGAGTAACTACAATGATGTTTTCCAGGAAAGGGATAAAACAAAAACCCACGCATGGTTT
 
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rJMSF052M05-          ATACAGCATATGTATATACACATGGCTATTATAGTATTGGTGTTTTGCACTTGAGATCTG
                      ____________________________________________________________
consensus             ATACAGCATATGTATATACACATGGCTATTATAGTATTGGTGTTTTGCACTTGAGATCTG
 
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rJMSF052M05-          CAGAAGAATCATGGGAATGTATTTGCCAGTTTGAATGTTTCTTGCATGAGTGTTGCTGGT
                      ____________________________________________________________
consensus             CAGAAGAATCATGGGAATGTATTTGCCAGTTTGAATGTTTCTTGCATGAGTGTTGCTGGT
 
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rJMSF052M05-          CATCGGGATCGGGATGCCAGAGACCAGAAGTTCAGAAGAAACGATGGTAAAGCTGCGAAC
                      ____________________________________________________________
consensus             CATCGGGATCGGGATGCCAGAGACCAGAAGTTCAGAAGAAACGATGGTAAAGCTGCGAAC
 
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rJMSF052M05-          CAGCTAAGAAATGCCATGGCAGTAGCGGTCTCAAACTCTGTGCAGTGATTTTGAGAGCAA
                      ____________________________________________________________
consensus             CAGCTAAGAAATGCCATGGCAGTAGCGGTCTCAAACTCTGTGCAGTGATTTTGAGAGCAA
 
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rJMSF052M05-          ACGCCAAGATCATTTCCAATGAGCACAGTGATACCGGCTGAAGCACATGCTGCAGCGAAC
JMSF052M05+              CCAAGATCATTTCCAATGAGCACAGTGATACCGGCTGAAGCACATGCTGCAGCGAAC
                      ____________________________________________________________
consensus             ACGCCAAGATCATTTCCAATGAGCACAGTGATACCGGCTGAAGCACATGCTGCAGCGAAC
 
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rJMSF052M05-          ATTAGGGTGGAAGTAACCCCATCGCCAACAGCAAATATGCTAACAATAATCTGGTTTTGC
JMSF052M05+           ATTAGGGTGGAAGTAACCCCATCGCCAACAGCAAATATGCTAACAATAATCTGGTTTTGC
                      ____________________________________________________________
consensus             ATTAGGGTGGAAGTAACCCCATCGCCAACAGCAAATATGCTAACAATAATCTGGTTTTGC
 
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rJMSF052M05-          AAAGTTCGCCCCACAAGAAGAGCATAAATATCAAGAATTCCTAGTGAAAAGCTCCACAAA
JMSF052M05+           AAAGTTCGCCCCACAAGAAGAGCATAAATATCAAGAATTCCTAGTGAAAAGCTCCACAAA
                      ____________________________________________________________
consensus             AAAGTTCGCCCCACAAGAAGAGCATAAATATCAAGAATTCCTAGTGAAAAGCTCCACAAA
 
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rJMSF052M05-          ACTTGCAGGCCAGCAGCAGCAACAAGGTAACAGAAAGCGGTGACGGATGAGAAGTCGCCG
JMSF052M05+           ACTTGCAGGCCAGCAGCAGCAACAAGGTAACAGAAAGCGGTGACGGATGAGAAGTCGCCG
                      ____________________________________________________________
consensus             ACTTGCAGGCCAGCAGCAGCAACAAGGTAACAGAAAGCGGTGACGGATGAGAAGTCGCCG
 
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rJMSF052M05-          GTGGATGCCATGATGGAGAGAGCGACGGCGGCGAAGACGAACTGAGAGAAACGCAGGAAG
JMSF052M05+           GTGGATGCCATGATGGAGAGAGCGACGGCGGCGAAGACGAACTGAGAGAAACGCAGGAAG
                      ____________________________________________________________
consensus             GTGGATGCCATGATGGAGAGAGCGACGGCGGCGAAGACGAACTGAGAGAAACGCAGGAAG
 
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rJMSF052M05-          AGGCCGCTGATCGTGCCAGGCATCCCTTGGATGTCCTTCATCCTGACTCTCGGCACGTTC
JMSF052M05+           AGGCCGCTGATCGTGCCAGGCATCCCTTGGATGTCCTTCATCCTGACTCTCGGCACGTTC
                      ____________________________________________________________
consensus             AGGCCGCTGATCGTGCCAGGCATCCCTTGGATGTCCTTCATCCTGACTCTCGGCACGTTC
 
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rJMSF052M05-          GCCGCCTCCGTCTGAAGCGGCGGAGCTTCGACCGGATGCACTGACGCGTGGCTCACACTC
JMSF052M05+           GCCGCCTCCGTCTGAAGCGGCGGAGCTTCGACCGGATGCACTGACGCGTGGCTCACACTC
                      ____________________________________________________________
consensus             GCCGCCTCCGTCTGAAGCGGCGGAGCTTCGACCGGATGCACTGACGCGTGGCTCACACTC
 
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rJMSF052M05-          ATTCTTATCTACAACTCAACCGACCACTAGCAACGCCGCCAAATCGTCTCGCTTACAGTT
JMSF052M05+           ATTCTTATCTACAACTCAACCGACCACTAGCAACGCCGCCAAATCGTCTCGCTTACAGTT
                      ____________________________________________________________
consensus             ATTCTTATCTACAACTCAACCGACCACTAGCAACGCCGCCAAATCGTCTCGCTTACAGTT
 
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rJMSF052M05-          CGTCAGATCTACCAGACTCACCGGACGATCGGAATAACTACCGGATCGGGATTATGAAAC
JMSF052M05+           CGTCAGATCTACCAGACTCACCGGACGATCGGAATAACTACCGGATCGGGATTATGAAAC
                      ____________________________________________________________
consensus             CGTCAGATCTACCAGACTCACCGGACGATCGGAATAACTACCGGATCGGGATTATGAAAC
 
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rJMSF052M05-          GCCGTAGTTCTGACCTCTAGTAAAGGCTAGCTGGTTAACGTCGCCGTTTTGATCTTATAC
JMSF052M05+           GCCGTAGTTCTGACCTCTAGTAAAGGCTAGCTGGTTAACGTCGCCGTTTTGATCTTATAC
                      ____________________________________________________________
consensus             GCCGTAGTTCTGACCTCTAGTAAAGGCTAGCTGGTTAACGTCGCCGTTTTGATCTTATAC
 
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rJMSF052M05-          TGG                                                         
JMSF052M05+           TGGAAGCAGCTAGAATAGAAAATGGCGACTGAAGAAAGCTTGGCGAGATGAGGGTGCATC
                      ____________________________________________________________
consensus             TGGAAGCAGCTAGAATAGAAAATGGCGACTGAAGAAAGCTTGGCGAGATGAGGGTGCATC