Contig 003918:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF017G01-                                                 GATGAAGTAGGATTGCTACCC
rJMSF052C04-                                               TTGATGAAGTAGGATTGCTACCC
                      ____________________________________________________________
consensus                                                  TTGATGAAGTAGGATTGCTACCC
 
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rJMSF017G01-          CAACTTGAAAAACAAAAAAACAGCTGCCAGAATTTAAGCTGGCTGCTACGGTTAACATTT
rJMSF052C04-          CAACTTGAAAAACAAAAAAACAGCTGCCAGAATTTAAGCTGGCTGCTACGGTTAACATTT
                      ____________________________________________________________
consensus             CAACTTGAAAAACAAAAAAACAGCTGCCAGAATTTAAGCTGGCTGCTACGGTTAACATTT
 
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rJMSF017G01-          TACTGATTTAACAAAGTACACAACTTGATATAATTAGCTTCAGTAGAGAGCAATAGAAAA
rJMSF052C04-          TACTGATTTAACAAAGTACACAACTTGATATAATTAGCTTCAGTAGAGAGCAATAGAAAA
                      ____________________________________________________________
consensus             TACTGATTTAACAAAGTACACAACTTGATATAATTAGCTTCAGTAGAGAGCAATAGAAAA
 
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rJMSF017G01-          GGCTTTCAGCCTGTGGGTGAATAAAACACGCTAGTTGGTCTTTGCCTACACAATATTCTC
rJMSF052C04-          GGCTTTCAGCCTGTGGGTGAATAAAACACGCTAGTTGGTCTTTGCCTACACAATATTCTC
                      ____________________________________________________________
consensus             GGCTTTCAGCCTGTGGGTGAATAAAACACGCTAGTTGGTCTTTGCCTACACAATATTCTC
 
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rJMSF017G01-          TTCAATGGAATTGTAAAGGAAAAGGTGAATACCAACAACTGTGGCAATTATGAAGCCAGA
rJMSF052C04-          TTCAATGGAATTGTAAAGGAAAAGGTGAATACCAACAACTGTGGCAATTATGAAGCCAGA
                      ____________________________________________________________
consensus             TTCAATGGAATTGTAAAGGAAAAGGTGAATACCAACAACTGTGGCAATTATGAAGCCAGA
 
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rJMSF017G01-          AGTGCTTCAATTTTGGCAATCTGATCTTCTTCCTTCTGTGGGGGAGGACTCTTGTTCGCT
rJMSF052C04-          AGTGCTTCAATTTTGGCAATCTGATCTTCTTCCTTCTGTGGGGGAGGACTCTTGTTCGCT
                      ____________________________________________________________
consensus             AGTGCTTCAATTTTGGCAATCTGATCTTCTTCCTTCTGTGGGGGAGGACTCTTGTTCGCT
 
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rJMSF017G01-          CCATTGAAAAGATCATGTTTCCACTTCTCAACACTCTTGTTTGAACGATAGCTTGGCCTT
rJMSF052C04-          CCATTGAAAAGATCATGTTTCCACTTCTCAACACTCTTGTTTGAACGATAGCTTGGCCTT
                      ____________________________________________________________
consensus             CCATTGAAAAGATCATGTTTCCACTTCTCAACACTCTTGTTTGAACGATAGCTTGGCCTT
 
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rJMSF017G01-          GAACCCACTTTGTCTCTTCCCCTAAAATTACCGCTCTCATAGTACCTACTACCTGGTCTT
rJMSF052C04-          GAACCCACTTTGTCTCTTCCCCTAAAATTACCGCTCTCATAGTACCTACTACCTGGTCTT
                      ____________________________________________________________
consensus             GAACCCACTTTGTCTCTTCCCCTAAAATTACCGCTCTCATAGTACCTACTACCTGGTCTT
 
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rJMSF017G01-          GAAGGGAACTTCCCCCTCCATGTCCCACTCCTGTTTGCTGATCTATCCCCACTGAATTGC
rJMSF052C04-          GAAGGGAACTTCCCCCTCCATGTCCCACTCCTGTTTGCTGATCTATCCCCACTGAATTGC
                      ____________________________________________________________
consensus             GAAGGGAACTTCCCCCTCCATGTCCCACTCCTGTTTGCTGATCTATCCCCACTGAATTGC
 
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rJMSF017G01-          TTCTCAGCTTGGTCTGGATGATGAGAAACGTAGCTGCTTTTCTCATTTCTTCTTTCAACA
rJMSF052C04-          TTCTCAGCTTGGTCTGGATGATGAGAAACGTAGCTGCTTTTCTCATTTCTTCTTTCAACA
                      ____________________________________________________________
consensus             TTCTCAGCTTGGTCTGGATGATGAGAAACGTAGCTGCTTTTCTCATTTCTTCTTTCAACA
 
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rJMSF017G01-          TGTACAGGGCGGTTGGAGGAGTTAGGCTTAGCTGCCTCTGTTTCCCCTTTCTCAACTTTC
rJMSF052C04-          TGTACAGGGCGGTTGGAGGAGTTAGGCTTAGCTGCCTCTGTTTCCCCTTTCTCAACTTTC
                      ____________________________________________________________
consensus             TGTACAGGGCGGTTGGAGGAGTTAGGCTTAGCTGCCTCTGTTTCCCCTTTCTCAACTTTC
 
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rJMSF017G01-          TCAGGATCTGCAGAGATCTTTTCCTCTCTAAATGATCTTTTCTTTGCAGGTGGCTTTGGA
rJMSF052C04-          TCAGGATCTGCAGAGATCTTTTCCTCTCTAAATGATCTTTTCTTTGCAGGTGGCTTTGGA
JMSF052C04+                                                                    GGA
                      ____________________________________________________________
consensus             TCAGGATCTGCAGAGATCTTTTCCTCTCTAAATGATCTTTTCTTTGCAGGTGGCTTTGGA
 
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rJMSF017G01-          TTTGTTTCTAACTCATAGTACCCATCATGGCGCCNAGAATCAGTTTCTTTTCCATGAACT
rJMSF052C04-          TTTGTTTCTAACTCATAGTACCCATCATGGCGCCAAGAATCAGTTTCTTTTCCATGAACT
JMSF052C04+           TTTGTTTCTAACTCATAGTACCCATCATGGCGCCAAGAATCAGTTTCTTTTCCATGAACT
                      ____________________________________________________________
consensus             TTTGTTTCTAACTCATAGTACCCATCATGGCGCCAAGAATCAGTTTCTTTTCCATGAACT
 
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rJMSF017G01-          T                                                           
rJMSF052C04-          TTGGCTTTCTGATCCATCGGCAATGTATCATTACTTGTTTTCCTGTTCACCTGCTCCTTG
JMSF052C04+           TTGGCTTTCTGATCCATCGGCAATGTATCATTACTTGTTTTCCTGTTCACCTGCTCCTTG
                      ____________________________________________________________
consensus             TTGGCTTTCTGATCCATCGGCAATGTATCATTACTTGTTTTCCTGTTCACCTGCTCCTTG
 
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rJMSF052C04-          GCATCCCTCCATTGGCCATGCCCATCTGACTCTCTTCGCCTTGAGCTTCGACCAGCTTGC
JMSF052C04+           GCATCCCTCCATTGGCCATGCCCATCTGACTCTCTTCGCCTTGAGCTTCGACCAGCTTGC
                      ____________________________________________________________
consensus             GCATCCCTCCATTGGCCATGCCCATCTGACTCTCTTCGCCTTGAGCTTCGACCAGCTTGC
 
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rJMSF052C04-          CCGGCATTACCACGTTCATCGTGCTGAAAGTACGTCCGAGAGCGGGG             
JMSF052C04+           CCGGCATTACCACGTTCATCGTGCTGAAAGTACGTCCGAGAGCGGGGTGCTTCTGCTTGA
                      ____________________________________________________________
consensus             CCGGCATTACCACGTTCATCGTGCTGAAAGTACGTCCGAGAGCGGGGTGCTTCTGCTTGA
 
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JMSF052C04+           TCTGTAGAATGTTTGGCAGATTGATGCTGAGGTAATTCTGATGGATCAGAAGAATGTTTG
                      ____________________________________________________________
consensus             TCTGTAGAATGTTTGGCAGATTGATGCTGAGGTAATTCTGATGGATCAGAAGAATGTTTG
 
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JMSF052C04+           GTTCCTTCTATGTGAACATCCCTCCTCTGGTCAGATACCTTTCTTGCAGTTCTTTCTGTC
                      ____________________________________________________________
consensus             GTTCCTTCTATGTGAACATCCCTCCTCTGGTCAGATACCTTTCTTGCAGTTCTTTCTGTC
 
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JMSF052C04+           CTATATTCCTGTCTAGATGGTGCCTCATGAGACACTGCATCTCGCAATTGATGTTGGTGA
                      ____________________________________________________________
consensus             CTATATTCCTGTCTAGATGGTGCCTCATGAGACACTGCATCTCGCAATTGATGTTGGTGA
 
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JMSF052C04+           TTTCGTTCTCGATCTGAATTTTTCCTAACATCTGAAGAATTGTTTGTGGGGTGCCTCTCA
                      ____________________________________________________________
consensus             TTTCGTTCTCGATCTGAATTTTTCCTAACATCTGAAGAATTGTTTGTGGGGTGCCTCTCA
 
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JMSF017G01+                                               CTCGGTTCTTGATCGAATCGAGAC
JMSF013I20+                                               CTCGGTTCTTGATCGAATCGAGAC
JMSF052C04+           TTTTCTGGTTTACTATCCCGCCTAGATCTCTTTGGGCTCGGTTCTTGATCGAATCGAGAC
                      ____________________________________________________________
consensus             TTTTCTGGTTTACTATCCCGCCTAGATCTCTTTGGGCTCGGTTCTTGATCGAATCGAGAC
 
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JMSF017G01+           CGGTGGCGTCTGGGATCAGAATCGCGGCGTTCAAGCCGAGACATTACAGATCGGCGGCGA
JMSF013I20+           CGGTGGCGTCTGGGATCAGAATCGCGGCGTTCAAGCCGAGACATTACAGATCGGCGGCGA
JMSF052C04+           CGGTGGCGTCTGGGATCAGAATCGCGGCGTTCAAGCCGAGACATTACAGATCGGCGGCGA
                      ____________________________________________________________
consensus             CGGTGGCGTCTGGGATCAGAATCGCGGCGTTCAAGCCGAGACATTACAGATCGGCGGCGA
 
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JMSF017G01+           TGAATGCCTACAAACTCAGGCTGCTGAAATGCTAACACTCCTCCGGGTAGTGTAGAGCCC
JMSF013I20+           TGAATGCCTACAAACTCAGGCTGCTGAAATGCTAACACTCCTCCGGGTAGTGTAGAGCCC
JMSF052C04+           TGAATGCCTACAAACTCAGGCTGCTGAAATGCTAACACTCCTCCGGGTAGTGTAGAGCCC
                      ____________________________________________________________
consensus             TGAATGCCTACAAACTCAGGCTGCTGAAATGCTAACACTCCTCCGGGTAGTGTAGAGCCC