Contig 003910:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030L21Sequence473016298ref|XP_006428466.1|6e-06hypothetical protein CICLE_v10013112mg [Citrus clementina] gb|ESR41706.1| hypoth704003910 (6)ref|XP_003590524.1|7e-91Ras-like protein [Medicago truncatula] gb|KEH42355.1| RAB GTPase-like protein A5
JMFN010K02Sequence627003910 (6)dbj|BAB84324.1|3e-100ras-related protein RAB8-3 [Nicotiana tabacum]
JMSF028N06Sequence657003910 (6)ref|XP_009600588.1|3e-95PREDICTED: ras-related protein RABE1c-like [Nicotiana tomentosiformis] ref|XP_00675003910 (6)ref|XP_009630662.1|4e-97PREDICTED: ras-related protein RABE1c [Nicotiana tomentosiformis]
JMSF051D07Sequence660003910 (6)dbj|BAB84324.1|5e-101ras-related protein RAB8-3 [Nicotiana tabacum]778003910 (6)ref|XP_009630662.1|1e-96PREDICTED: ras-related protein RABE1c [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF051D07-                                           ATTCAGCAGACTCCACAAAAAGAATTG
                      ____________________________________________________________
consensus                                              ATTCAGCAGACTCCACAAAAAGAATTG
 
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rJMFF030L21-                                   ACTTTTTTCNCAAAATTAAGAGCAGTGAGATAATG
rJMSF051D07-          AACATAATGTATGTACTATCAAAATACTTTTTTCCCAAAATTAAGAGCAGTGAGATAATG
                      ____________________________________________________________
consensus             AACATAATGTATGTACTATCAAAATACTTTTTTCCCAAAATTAAGAGCAGTGAGATAATG
 
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rJMFF030L21-          CAAAATGGTCGATACTGAGATGTTTGATGTCAAGCAATACAACCAACACTAACAATTTTC
rJMSF051D07-          CAAAATGGTCGATACTGAGATGTTTGATGTCAAGCAATACAACCAACACTAACAATTTTC
rJMSF028N06-                           AGATGTTTGATGTCAAGCAATACAACCAACACTAACAATTTTC
                      ____________________________________________________________
consensus             CAAAATGGTCGATACTGAGATGTTTGATGTCAAGCAATACAACCAACACTAACAATTTTC
 
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rJMFF030L21-          AGATAAGATCAGATCCTCCNACCAAAATGGTCGCCATAGAGGAAATATCTCCTATTACCC
rJMSF051D07-          AGATAAGATCAGATCCTCCAACCAAAATGGTCGCCATAGAGGAAATATCTCCTATTACCC
rJMSF028N06-          AGATAAGATCAGATCCTCCAACCAAAATGGTCGCCATAGAGGAAATATCTCCTATTACCC
                      ____________________________________________________________
consensus             AGATAAGATCAGATCCTCCAACCAAAATGGTCGCCATAGAGGAAATATCTCCTATTACCC
 
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rJMFF030L21-          TATCTTCACCACAAGCTTGCANATTGATTAACCACAGCAGGATGATTTTTGGGCTGCAGC
rJMSF051D07-          TATCTTCACCACAAGCTTGCAGATTGATTAACCACAGCAGGATGATTTTTGGGCTGCAGC
rJMSF028N06-          TATCTTCACCACAAGCTTGCAGATTGATTAACCACAGCAGGATGATTTTTGGGCTGCAGC
                      ____________________________________________________________
consensus             TATCTTCACCACAAGCTTGCAGATTGATTAACCACAGCAGGATGATTTTTGGGCTGCAGC
 
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rJMFF030L21-          AGCTGACCCTCCTGCCTGGTCTTGTTGGTTAATCTTCAGGGTCTGAGGCTCAGCTTTTGA
rJMSF051D07-          AGCTGACCCTCCTGCCTGGTCTTGTTGGTTAATCTTCAGGGTCTGAGGCTCAGCTTTTGA
rJMSF028N06-          AGCTGACCCTCCTGCCTGGTCTTGTTGGTTAATCTTCAGGGTCTGAGGCTCAGCTTTTGA
                      ____________________________________________________________
consensus             AGCTGACCCTCCTGCCTGGTCTTGTTGGTTAATCTTCAGGGTCTGAGGCTCAGCTTTTGA
 
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rJMFF030L21-          ATCGGATTCGGCAAGCCTTTTTTTAATATCCCTAGCTATTGAAAAGAAAACCTCCTCAAC
rJMSF051D07-          ATCGGATTCGGCAAGCCTTTTTTTAATATCCCTAGCTATTGAAAAGAAAACCTCCTCAAC
rJMSF028N06-          ATCGGATTCGGCAAGCCTTTTTTTAATATCCCTAGCTATTGAAAAGAAAACCTCCTCAAC
JMFN010K02+             CGGATTCGGCAAGCCTTNTTTTAATATCCCTAGCTATTGAAAAGAAAACCTCCTCAAC
JMSF028N06+                                      ATCCCTAGCTATTGAAAAGAAAACCTCCTCAAC
JMSF051D07+           ATCGGATTCGGCAAGCCTTTTTTTAATATCCCTAGCTATTGAAAAGAAAACCTCCTCAAC
                      ____________________________________________________________
consensus             ATCGGATTCGGCAAGCCTTTTTTTAATATCCCTAGCTATTGAAAAGAAAACCTCCTCAAC
 
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rJMFF030L21-          ATTCATATTGGTCTTGGNACTCGTCTCNAAGAATTTTATGCCATATTCATCAGCTAGTGC
rJMSF051D07-          ATTCATATTGGTCTTGGCACTCGTCTCAAAGAATTTTATGCCATATTCATCAGCTAGTGC
rJMSF028N06-          ATTCATATTGGTCTTGGCACTCGTCTCAAAGAATTTTATGCCATATTCATCAGCTAGTGC
JMFN010K02+           ATTCATATTGGTCTTGGCACTCGTCTCAAAGAATTTTATGCCATATTCATCAGCTAGTGC
JMSF028N06+           ATTCATATTGGTCTTGGCACTCGTCTCAAAGAATTTTATGCCATATTCATCAGCTAGTGC
JMSF051D07+           ATTCATATTGGTCTTGGCACTCGTCTCAAAGAATTTTATGCCATATTCATCAGCTAGTGC
                      ____________________________________________________________
consensus             ATTCATATTGGTCTTGGCACTCGTCTCAAAGAATTTTATGCCATATTCATCAGCTAGTGC
 
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rJMFF030L21-          TTGACCCTTGGAANTGGGAACAGCCCTTTTGCTTTCATCCATGTCAGCCTTGTTCCCAAC
rJMSF051D07-          TTGACCCTTGGAAGTGGGAACAGCCCTTTTGCTTTCATCCATGTCAGCCTTGTTCCCAAC
rJMSF028N06-          TTGACCCTTGGAAGTGGGAACAGCCCTTTTGCTTTCATCCATGTCAGCCTTGTTCCCAAC
JMFN010K02+           TTGACCCTTGGAAGTGGGAACAGCCCTTTTGCTTTCATCCATGTCAGCCTTGTTCCCAAC
JMSF028N06+           TTGACCCTTGGAAGTGGGAACAGCCCTTTTGCTTTCATCCATGTCAGCCTTGTTCCCAAC
JMSF051D07+           TTGACCCTTGGAAGTGGGAACAGCCCTTTTGCTTTCATCCATGTCAGCCTTGTTCCCAAC
                      ____________________________________________________________
consensus             TTGACCCTTGGAAGTGGGAACAGCCCTTTTGCTTTCATCCATGTCAGCCTTGTTCCCAAC
 
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rJMFF030L21-          CAAAATTTTATTGACATTATCAGAAGCATGCTGTTCNATATTTCGAATCCNGTTCCTGAT
rJMSF051D07-          CAAAATTTTATTGACATTATCAGAAGCATGCTGTTCAATATTTCGAATCCAGTTCCTGAT
rJMSF028N06-          CAAAATTTTATTGACATTATCAGAAGCATGCTGTTCAATATTTCGAATCCAGTTCCTGAT
JMFN010K02+           CAAAATTTTATTGACATTATCAGAAGCATGCTGTTCAATATTTCGAATCCAGTTCCTGAT
JMSF028N06+           CAAAATTTTATTGACATTATCAGAAGCATGCTGTTCAATATTTCGAATCCAGTTCCTGAT
JMSF051D07+           CAAAATTTTATTGACATTATCAGAAGCATGCTGTTCAATATTTCGAATCCAGTTCCTGAT
                      ____________________________________________________________
consensus             CAAAATTTTATTGACATTATCAGAAGCATGCTGTTCAATATTTCGAATCCAGTTCCTGAT
 
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rJMFF030L21-          GTTGTTAAATGATGACTCGTCAGTCACGTCATACACCAACAAAATACCCATGGCTCCACG
rJMSF051D07-          GTTGTTAAATGATGACTCGTCAGTCACGTCATACACCAACAAAATACCCATGGCTCCACG
rJMSF028N06-          GTTGTTAAATGATGACTCGTCAGTCACGTCATACACCAACAAAATACCCATGGCTCCACG
JMFN010K02+           GTTGTTAAATGATGACTCGTCAGTCACGTCATACACCAACAAAATACCCATGGCTCCACG
JMSF028N06+           GTTGTTAAATGATGACTCGTCAGTCACGTCATACACCAACAAAATACCCATGGCTCCACG
JMSF051D07+           GTTGTTAAATGATGACTCGTCAGTCACGTCATACACCAACAAAATACCCATGGCTCCACG
                      ____________________________________________________________
consensus             GTTGTTAAATGATGACTCGTCAGTCACGTCATACACCAACAAAATACCCATGGCTCCACG
 
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rJMFF030L21-          ATAGNAAGCAGTAGTGATTGTTCGGAACCGCTCTTGACCAGCAGTATCCCAGATTTGAAG
rJMSF051D07-          ATAGTAAGCAGTAGTGATTGTTCGGAACCGCTCTTGACCAGCAGTATCCCAGATTTGAAG
rJMSF028N06-          ATAGTAAGCAGTAGTGATTGTTCGGAACCGCTCTTGACCAGCAGTATCCCAGATTTGAAG
JMFN010K02+           ATAGTAAGCAGTAGTGATTGTTCGGAACCGCTCTTGACCAGCAGTATCCCAGATTTGAAG
JMSF028N06+           ATAGTAAGCAGTAGTGATTGTTCGGAACCGCTCTTGACCAGCAGTATCCCAGATTTGAAG
JMSF051D07+           ATAGTAAGCAGTAGTGATTGTTCGGAACCGCTCTTGACCAGCAGTATCCCAGATTTGAAG
                      ____________________________________________________________
consensus             ATAGTAAGCAGTAGTGATTGTTCGGAACCGCTCTTGACCAGCAGTATCCCAGATTTGAAG
 
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rJMFF030L21-          TTTGATCCGTTTTCCATCAAGCTCTATAGNCCTTATCTTGAAATCAATGCCAATGGTAGT
rJMSF051D07-          TTTGATCCGTTTTCCATCAAGCTCTATAGTCCTTATCTTGAAATCAATGCCAATGGTAGT
rJMSF028N06-          TTTGATCCGTTTTCCATCAAGCTCTATAGTCCTTATCTTGAAATCAATGCCAATGGTAGT
JMFN010K02+           TTTGATCCGTTTTCCATCAAGCTCTATAGTCCTTATCTTGAAATCAATGCCAATGGTAGT
JMSF028N06+           TTTGATCCGTTTTCCATCAAGCTCTATAGTCCTTATCTTGAAATCAATGCCAATGGTAGT
JMSF051D07+           TTTGATCCGTTTTCCATCAAGCTCTATAGTCCTTATCTTGAAATCAATGCCAATGGTAGT
                      ____________________________________________________________
consensus             TTTGATCCGTTTTCCATCAAGCTCTATAGTCCTTATCTTGAAATCAATGCCAATGGTAGT
 
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rJMFF030L21-          AATGAAACT                                                   
rJMSF051D07-          AATGAAACTGGTGGTGAAGGAACCATCTGAG                             
rJMSF028N06-          AATGAAACTGGTGGTGAAGGAACCATCTGAGA                            
JMFN010K02+           AATGAAACTGGTGGTGAAGGAACCATCTGAGAAACGTAAAAGAAGGCAACTCTTACCCAC
JMSF028N06+           AATGAAACTGGTGGTGAAGGAACCATCTGAGAAACGTAAAAGAAGGCAACTCTTACCCAC
JMSF051D07+           AATGAAACTGGTGGTGAAGGAACCATCTGAGAAACGTAAAAGAAGGCAACTCTTACCCAC
                      ____________________________________________________________
consensus             AATGAAACTGGTGGTGAAGGAACCATCTGAGAAACGTAAAAGAAGGCAACTCTTACCCAC
 
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JMFN010K02+           GCCGCTGTCGCCGATCAAGAGGAGTTTGATGAGGTAATCATAGTCGGCTCGAGCTCTAGC
JMSF028N06+           GCCGCTGTCGCCGATCAAGAGGAGTTTGATGAGGTAATCATAGTCGGCTCGAGCTCTAGC
JMSF051D07+           GCCGCTGTCGCCGATCAAGAGGAGTTTGATGAGGTAATCATAGTCGGCTCGAGCTCTAGC
                      ____________________________________________________________
consensus             GCCGCTGTCGCCGATCAAGAGGAGTTTGATGAGGTAATCATAGTCGGCTCGAGCTCTAGC
 
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JMFN010K02+           GGGCGGAGCAGCCATTTGATTTCTCAGATATCCAGGTGCTAATGATGAAAATGGAAACAA
JMSF028N06+           GGGCGGAGCAGCCATTTGATTTCTCAGATATCC                           
JMSF051D07+           GGGCGGAGCAGCCATTTGATTTCTCAGATATCCAGGTGCTAATGATGAAAATGGAAACAA
                      ____________________________________________________________
consensus             GGGCGGAGCAGCCATTTGATTTCTCAGATATCCAGGTGCTAATGATGAAAATGGAAACAA
 
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JMFN010K02+           TAACCC                                                      
JMSF051D07+           TAACCCGGATCGAAGAAAAGTGGAGAAAAGATGAGAGAGCGAGAGATGAAAAGAGAGACC
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consensus             TAACCCGGATCGAAGAAAAGTGGAGAAAAGATGAGAGAGCGAGAGATGAAAAGAGAGACC