Contig 003909:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-                                                   AAGGAATGGTTTTCAGATT
                      ____________________________________________________________
consensus                                                      AAGGAATGGTTTTCAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          ATCATCAGGGAAATTTGAACCGGAGACTCAACATCTACAGAGTCTGCGGAAAGAGGACCT
                      ____________________________________________________________
consensus             ATCATCAGGGAAATTTGAACCGGAGACTCAACATCTACAGAGTCTGCGGAAAGAGGACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          CTAACCCATAGAGTACGCCTGCATACTTCTCAGTAAGCGCCTCATTGTTGTCAAAGTAGA
                      ____________________________________________________________
consensus             CTAACCCATAGAGTACGCCTGCATACTTCTCAGTAAGCGCCTCATTGTTGTCAAAGTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          GCTTTCGGATCTTCTGAAAAGAGTGCCAAGTGAGTAAACTATCAGACCCGGCCTGGTGGC
                      ____________________________________________________________
consensus             GCTTTCGGATCTTCTGAAAAGAGTGCCAAGTGAGTAAACTATCAGACCCGGCCTGGTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          ACTTCCCGACAGCCCTGTTAACCTCAAGCGAGCTGGCCACTCGGTCCAGTCCACCATAGA
                      ____________________________________________________________
consensus             ACTTCCCGACAGCCCTGTTAACCTCAAGCGAGCTGGCCACTCGGTCCAGTCCACCATAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          GGCTCTTGCAGAACTTCATCAAATGTTTCACGTCATACACCCTCTTCCCAAAGAAGAGCC
                      ____________________________________________________________
consensus             GGCTCTTGCAGAACTTCATCAAATGTTTCACGTCATACACCCTCTTCCCAAAGAAGAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          CTAGCAATCCCAGGAATTGCCGGAGCTCCCCCGGCAGGTTCCGGCCGGTTAAGGCCTTGA
JMFN037G01+                                                 TTCCGGCCGGTTAAGGCCTGAT
JMSF051C01+                     CAGGAATTGCCGGAGCTCCCCCGGCAGGTTCCGGCCGGTTAAGGCCTTGA
                      ____________________________________________________________
consensus             CTAGCAATCCCAGGAATTGCCGGAGCTCCCCCGGCAGGTTCCGGCCGGTTAAGGCCTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          TCAGGTATCCAAAGTCATAGCCACTGTGGAAGGTGATGTAGGTGACGGCCTCATTGCACA
JMFN037G01+           CCAGGTATCCAAAGTCATAGCCACTGTGGAAGGTGATGTAGGTGACGGCCTCATTGCACA
JMSF051C01+           TCAGGTATCCAAAGTCATAGCCACTGTGGAAGGTGATGTAGGTGACGGCCTCATTGCACA
                      ____________________________________________________________
consensus             TCAGGTATCCAAAGTCATAGCCACTGTGGAAGGTGATGTAGGTGACGGCCTCATTGCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          CCAGACCGGAAGACATCATCAGCTCCGCAAAGCGGGCGGTATGCGCCCCAAAAGCCCGAG
JMFN037G01+           CCAGACCGGAAGACATCATCAGCTCCGCAAAGCGGGCGGTATGCGCCCCAAAAGCCCGAG
JMSF051C01+           CCAGACCGGAAGACATCATCAGCTCCGCAAAGCGGGCGGTATGCGCCCCAAAAGCCCGAG
                      ____________________________________________________________
consensus             CCAGACCGGAAGACATCATCAGCTCCGCAAAGCGGGCGGTATGCGCCCCAAAAGCCCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          TCCGGTCGAAATCAATGCCCTGGTGGCGGAGGAGCTCTATGGATCCCGGAGCGTGATCAT
JMFN037G01+           TCCGGTCGAAATCAATGCCCTGGTGGCGGAGGAGCTCTATGGATCCCGGAGCGTGATCAT
JMSF051C01+           TCCGGTCGAAATCAATGCCCTGGTGGCGGAGGAGCTCTATGGATCCCGGAGCGTGATCAT
                      ____________________________________________________________
consensus             TCCGGTCGAAATCAATGCCCTGGTGGCGGAGGAGCTCTATGGATCCCGGAGCGTGATCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          CGCGCACCACATCAAAGTCACAGAAGTTGAACTCCCAAATGAAGCGGAAGTGGGAGCCCA
JMFN037G01+           CGCGCACCACATCAAAGTCACAGAAGTTGAACTCCCAAATGAAGCGGAAGTGGGAGCCCA
JMSF051C01+           CGCGCACCACATCAAAGTCACAGAAGTTGAACTCCCAAATGAAGCGGAAGTGGGAGCCCA
                      ____________________________________________________________
consensus             CGCGCACCACATCAAAGTCACAGAAGTTGAACTCCCAAATGAAGCGGAAGTGGGAGCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          GGTCCGGCAGGTTCCCGGCGGCATCAGTGAGAGTGATCCCCACCTGGATAAGCTTCAGCG
JMFN037G01+           GGTCCGGCAGGTTCCCGGCGGCATCAGTGAGAGTGATCCCCACCTGGATAAGCTTCAGCG
JMSF051C01+           GGTCCGGCAGGTTCCCGGCGGCATCAGTGAGAGTGATCCCCACCTGGATAAGCTTCAGCG
                      ____________________________________________________________
consensus             GGTCCGGCAGGTTCCCGGCGGCATCAGTGAGAGTGATCCCCACCTGGATAAGCTTCAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C01-          CGTCANCATTCGACTTCAGATAGATGTAATGCTCGTCCGGC                   
JMFN037G01+           CGTCAACATTCGACTTCAGATAGATGTAATGCTCGTCCGGCTTCCAGTCCCGGAGGTCAT
JMSF051C01+           CGTCAACATTCGACTTCAGATAGATGTAATGCTCGTCCGGCTTCCAGTCCCGGAGGTCAT
                      ____________________________________________________________
consensus             CGTCAACATTCGACTTCAGATAGATGTAATGCTCGTCCGGCTTCCAGTCCCGGAGGTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN037G01+           AGCGGAAAACCACGCCGGGAAACTCCGTGTCCATCGATACGAACGGGTAACGGTCGAGGA
JMSF051C01+           GGCGGAAAACCACGCCGGGAAACTCCGTGTCCATCGATACGAACGGGTAACGGTCGAGGA
                      ____________________________________________________________
consensus             GGCGGAAAACCACGCCGGGAAACTCCGTGTCCATCGATACGAACGGGTAACGGTCGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN037G01+           CGCGGCGAATCAACGCGAATTCCGACTCGAGATTTGACGACCACACTGAGCGGATCCGAA
JMSF051C01+           CGCGGCGAATCAACGCGAATTCCGACTCGAGATTTGACGACCACACTGAGCGGATCCGAA
                      ____________________________________________________________
consensus             CGCGGCGAATCAACGCGAATTCCGACTCGAGATTTGACGACCACACTGAGCGGATCCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN037G01+           TCGGCTTCTTGGAAGCTACGAGCGGAGGAGGAGGTGGAGCAGGCGGTGGAGAATTAGCCA
JMSF051C01+           TCGGCTTCTTGGAAGCTACGAGCGGAGGAGGAGGTGGAGCAGGCGGTGGAGAATTAGCCA
                      ____________________________________________________________
consensus             TCGGCTTCTTGGAAGCTACGAGCGGAGGAGGAGGTGGAGCAGGCGGTGGAGAATTAGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN037G01+           TGGAGGATTGGAGTGATCGATGATGATGATGAGAGCTGCTCTGACAGT            
JMSF051C01+           TGGAGGATTGGAGTGATCGATGATGATGATGAGAGCTGCTCTGACAGTGATGGGCCGGCC
                      ____________________________________________________________
consensus             TGGAGGATTGGAGTGATCGATGATGATGATGAGAGCTGCTCTGACAGTGATGGGCCGGCC