Contig 003906:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017O14Sequence493003906 (4)ref|XP_006350582.1|5e-29PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [798008444 (4)ref|XP_011084487.1|4e-118PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [
JMSF008B18Sequence219003906 (4)ref|XP_004234179.1|2e-08PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isofor770008444 (4)ref|XP_011084487.1|8e-122PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [
JMSF021C02Sequence676003906 (4)ref|XP_006350582.1|4e-42PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [753008444 (4)ref|XP_006350582.1|1e-113PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [
JMSF050J23Sequence615003906 (4)ref|XP_006350582.1|2e-36PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [709008444 (4)ref|XP_006350582.1|3e-107PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [

Alignment

This contig is upended


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JMSF021C02+                                                       CCAGTCCATGCTCACT
                      ____________________________________________________________
consensus                                                         CCAGTCCATGCTCACT
 
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JMSF021C02+           AAATCTGTGCCAACCGAATATTCTCTAACGAGTTTATTGATTTTTTCTTCTTCTGTTTCC
JMSF050J23+                                                        TCTTCTTCTGTTTCC
                      ____________________________________________________________
consensus             AAATCTGTGCCAACCGAATATTCTCTAACGAGTTTATTGATTTTTTCTTCTTCTGTTTCC
 
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JMSF021C02+           TCCTTACGCTTCCTTTCGTGGGAAGAAGCGACTATTTCGTCTCCCTTCATGTTTCTAAGA
JMSF050J23+           TCCTTACGCTTCCTTTCGTGGGAAGAAGCGACTATTTCGTCTCCCTTCATGTTTCTAAGA
                      ____________________________________________________________
consensus             TCCTTACGCTTCCTTTCGTGGGAAGAAGCGACTATTTCGTCTCCCTTCATGTTTCTAAGA
 
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JMSF021C02+           GCAACCCTCTTATCAAGACTCAACCGTTTCGTTTTCTTCCTTTGACAACTTCTCTTGACT
JMFF017O14+                                                        CAACTTCTCTTGACT
JMSF050J23+           GCAACCCTCTTATCAAGACTCAACCGTTTCGTTTTCTTCCTTTGACAACTTCTCTTGACT
                      ____________________________________________________________
consensus             GCAACCCTCTTATCAAGACTCAACCGTTTCGTTTTCTTCCTTTGACAACTTCTCTTGACT
 
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JMSF021C02+           ATACAGCCTTCAGAACCTATACGAGAAGTAGTAGGTTCTGGACTATGGATGTATAATTTC
JMFF017O14+           ATACAGCCTTCAGAACCTATACGAGAAGTAGTAGGTTCTGGACTATGGATGTATAATTTC
JMSF050J23+           ATACAGCCTTCAGAACCTATACGAGAAGTAGTAGGTTCTGGACTATGGATGTATAATTTC
                      ____________________________________________________________
consensus             ATACAGCCTTCAGAACCTATACGAGAAGTAGTAGGTTCTGGACTATGGATGTATAATTTC
 
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JMSF021C02+           TCGAGTTTGGCAGCAACATCATTGTAATCCAAATCTAGAGTACTCGGAGAGGCTTCACCC
JMFF017O14+           TCGAGTTTGGCAGCAACATCATTGTAATCCAAATCTAGAGTACTCGGAGAGGCTTCACCC
JMSF050J23+           TCGAGTTTGGCAGCAACATCATTGTAATCCAAATCTAGAGTACTCGGAGAGGCTTCACCC
                      ____________________________________________________________
consensus             TCGAGTTTGGCAGCAACATCATTGTAATCCAAATCTAGAGTACTCGGAGAGGCTTCACCC
 
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JMSF021C02+           GTAGAGACAGCATGAATCCTATCTGAACGCTTTTTAGCTCGCCCCACTCTCTTTTTACTC
JMFF017O14+           GTAGAGACAGCATGAATCCTATCTGAACGCTTTTTAGCTCGCCCCACTCTCTTTTTACTC
JMSF050J23+           GTAGAGACAGCATGAATCCTATCTGAACGCTTTTTAGCTCGCCCCACTCTCTTTTTACTC
                      ____________________________________________________________
consensus             GTAGAGACAGCATGAATCCTATCTGAACGCTTTTTAGCTCGCCCCACTCTCTTTTTACTC
 
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JMSF021C02+           TCTTTCGATGTCTCTAGAGACAACGATGTAGGTTCATCAGGATAAACCAAAGCAGCAGCA
JMFF017O14+           TCTTTCGATGTCTCTAGAGACAACGATGTAGGTTCATCAGGATAAACCAAAGCAGCAGCA
JMSF050J23+           TCTTTCGATGTCTCTAGAGACAACGATGTAGGTTCATCAGGATAAACCAAAGCAGCAGCA
                      ____________________________________________________________
consensus             TCTTTCGATGTCTCTAGAGACAACGATGTAGGTTCATCAGGATAAACCAAAGCAGCAGCA
 
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JMSF021C02+           TTTTTCGGTTTATTGGCTTTGAATGACAGTACTAACGGTCTTTTAAGCGCACATAAACGA
JMFF017O14+           TTTTTCGGTTTATTGGCTTTGAATGACAGTACTAACGGTCTTTTAAGCGCACATAAACGA
JMSF008B18+                                AATGACAGTACTAACGGTCTTTTAAGCGCACATAAACGA
JMSF050J23+           TTTTTCGGTTTATTGGCTTTGAATGACAGTACTAACGGTCTTTTAAGCGCACATAAACGA
                      ____________________________________________________________
consensus             TTTTTCGGTTTATTGGCTTTGAATGACAGTACTAACGGTCTTTTAAGCGCACATAAACGA
 
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JMSF021C02+           GAGGAAAATCTCGTGCTCAATCCCAAAGGACTCCTTGCAGCAGAGCTAGAAACAGTCACA
JMFF017O14+           GAGGAAAATCTCGTGCTCAATCCCAAAGGACTCCTTGCAGCAGAGCTAGAAACAGTCACA
JMSF008B18+           GAGGAAAATCTCGTGCTCAATCCCAAAGGACTCCTTGCAGCAGAGCTAGAAACAGTCACA
JMSF050J23+           GAGGAAAATCTCGTGCTCAATCCCAAAGGACTCCTTGCAGCAGAGCTAGAAACAGTCACA
                      ____________________________________________________________
consensus             GAGGAAAATCTCGTGCTCAATCCCAAAGGACTCCTTGCAGCAGAGCTAGAAACAGTCACA
 
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JMSF021C02+           ACTCCCATGCCAATAAAGTCTCAGAGAGAATTCAGCAAGTCTGCAGAGTTTCTGGTCGCC
JMFF017O14+           ACTCCCATGCCAATAAAGTCTCAGAGAGAATTCAGCAAGTCTGCAGAGTTTCTGGTCGCC
JMSF008B18+           ACTCCCATGCCAATAAAGTCTCAGAGAGAATTCAGCAAGTCTGCAGAGTTTCTGGTCGCC
JMSF050J23+           ACTCCCATGCCAATAAAGTCTCAGAGAGAATTCAGCAAGTCTGCAGAGTTTCTGGTCGCC
                      ____________________________________________________________
consensus             ACTCCCATGCCAATAAAGTCTCAGAGAGAATTCAGCAAGTCTGCAGAGTTTCTGGTCGCC
 
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JMSF021C02+           GGAGATTCAAGATTCCGGTGACTCTCAATCAAACAGAGGGCCCTGGACCGTAGTATTT  
JMFF017O14+           GGAGATTCAAGATTCCGGTGACTCTCAATCAAACAGAGGGCCCTGGACCGTAGTATTT  
JMSF008B18+           GGAGATTCAAGATTCCGGTGACTCTCAATCAAACAGAGGGCCCTGGACCGTAGTATTT  
JMSF050J23+           GGAGATTCAAGATTCCGGTGACTCTCAATCAAACAGAGGGCCCTGGACCGTAGTATTTCC
                      ____________________________________________________________
consensus             GGAGATTCAAGATTCCGGTGACTCTCAATCAAACAGAGGGCCCTGGACCGTAGTATTTCC