Contig 003903:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044I19Sequence702003903 (2)ref|XP_004251591.1|2e-58PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic [Solanum 766007244 (2)emb|CDP20806.1|1e-91unnamed protein product [Coffea canephora]
JMSF050H14Sequence663003903 (2)ref|XP_004251591.1|1e-50PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic [Solanum 771007244 (2)emb|CDP20806.1|2e-95unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF044I19+                             TTCTGACGAAAAATTAATCCCTCTTGCATAATTCTTCCCAAA
                      ____________________________________________________________
consensus                               TTCTGACGAAAAATTAATCCCTCTTGCATAATTCTTCCCAAA
 
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JMSF044I19+           CCAAAAGGATCAATGAGTTCATCTGAGCGTTTTGTCTTCCAATCAAGCATCATCCATTGC
JMSF050H14+                                         TTTGTCTTCCAATCAAGCATCATCCATTGC
                      ____________________________________________________________
consensus             CCAAAAGGATCAATGAGTTCATCTGAGCGTTTTGTCTTCCAATCAAGCATCATCCATTGC
 
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JMSF044I19+           TTCTCAGCAGCCAAGAAAACTGTTGTAATGGCAGCAAGGAGCATGCTCCAGTCAGGCAAC
JMSF050H14+           TTCTCAGCAGCCAAGAAAACTGTTGTAATGGCAGCAAGGAGCATGCTCCAGTCAGGCAAC
                      ____________________________________________________________
consensus             TTCTCAGCAGCCAAGAAAACTGTTGTAATGGCAGCAAGGAGCATGCTCCAGTCAGGCAAC
 
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JMSF044I19+           TGATTGATAAAGGTCCTTGGGTGAGAAGATGAGGTCACCTCATCGTCAGTTTTGTGGCCT
JMSF050H14+           TGATTGATAAAGGTCCTTGGGTGAGAAGATGAGGTCACCTCATCGTCAGTTTTGTGGCCT
                      ____________________________________________________________
consensus             TGATTGATAAAGGTCCTTGGGTGAGAAGATGAGGTCACCTCATCGTCAGTTTTGTGGCCT
 
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JMSF044I19+           TCCATAACACCTATCTTGGTTCCATTAACCTTGGGAGGTGCTTGTGCACTGGCTTTCACT
JMSF050H14+           TCCATAACACCTATCTTGGTTCCATTAACCTTGGGAGGTGCTTGTGCACTGGCTTTCACT
                      ____________________________________________________________
consensus             TCCATAACACCTATCTTGGTTCCATTAACCTTGGGAGGTGCTTGTGCACTGGCTTTCACT
 
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JMSF044I19+           TGTAAGTTTCGAGAGGTAGAAGATTTTGGCTTAATGCCCCGTGCATTGAGGCTTACAGGT
JMSF050H14+           TGTAAGTTTCGAGAGGTAGAAGATTTTGGCTTAATGCCCCGTGCATTGAGGCTTACAGGT
                      ____________________________________________________________
consensus             TGTAAGTTTCGAGAGGTAGAAGATTTTGGCTTAATGCCCCGTGCATTGAGGCTTACAGGT
 
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JMSF044I19+           GCAGTTCCTCCCAACTTTCCAGATGTTTGGGCACCAGACTCCGGAGTCAGATTGCCAACA
JMSF050H14+           GCAGTTCCTCCCAACTTTCCAGATGTTTGGGCACCAGACTCCGGAGTCAGATTGCCAACA
                      ____________________________________________________________
consensus             GCAGTTCCTCCCAACTTTCCAGATGTTTGGGCACCAGACTCCGGAGTCAGATTGCCAACA
 
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JMSF044I19+           GGAAAAAATGCAGCAGTAGCAGCAGTGGCAACCATGATGGAATTACTATAGCTAAGTAGT
JMSF050H14+           GGAAAAAATGCAGCAGTAGCAGCAGTGGCAACCATGATGGAATTACTATAGCTAAGTAGT
                      ____________________________________________________________
consensus             GGAAAAAATGCAGCAGTAGCAGCAGTGGCAACCATGATGGAATTACTATAGCTAAGTAGT
 
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JMSF044I19+           TGGTGTAATATCAACAAATTCACAAGACAATCAACAGATGAATCCTTAAAAGATCACCAA
JMSF050H14+           TGGTGTAATATCAACAAATTCACAAGACAATCAACAGATGAATCCTTAAAAGATCACCAA
                      ____________________________________________________________
consensus             TGGTGTAATATCAACAAATTCACAAGACAATCAACAGATGAATCCTTAAAAGATCACCAA
 
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JMSF044I19+           TATCCATCAAACAGTGACTTTTTCTCCCTTTTCCGGCACAGAATCTTCACCTTTTCCGGC
JMSF050H14+           TATCCATCAAACAGTGACTTTTTCTCCCTTTTCCGGCACAGAATCTTCACCTTTTCCGGC
                      ____________________________________________________________
consensus             TATCCATCAAACAGTGACTTTTTCTCCCTTTTCCGGCACAGAATCTTCACCTTTTCCGGC
 
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JMSF044I19+           ACAGAATCTTCTAGTAACTGAACATCGAATGCATGCATATGAGTTACAGAAGCTTCGTTT
JMSF050H14+           ACAGAATCTTCTAGTAACTGAACATCGAATGCATGCATATGAGTTACAGAAGCTTCGTTT
                      ____________________________________________________________
consensus             ACAGAATCTTCTAGTAACTGAACATCGAATGCATGCATATGAGTTACAGAAGCTTCGTTT
 
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JMSF044I19+           CTCTTTCCAGTTTCCAGCAAAAACCCGTATTGCGTGCCTTCTAGGGCTTGTTTGCTATCC
JMSF050H14+           CTCTTTCCAGTTTCCAGCAAAAACCCGTATTGCGTGCCTTCTAGGGCTTGTTTGCTATCC
                      ____________________________________________________________
consensus             CTCTTTCCAGTTTCCAGCAAAAACCCGTATTGCGTGCCTTCTAGGGCTTGTTTGCTATCC