Contig 003902:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012F14Sequence516000656 (14)gb|KDO55775.1|7e-79hypothetical protein CISIN_1g0019782mg, partial [Citrus sinensis] gb|KDO55776.1|696003902 (3)ref|XP_011071894.1|6e-46PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Sesamum indi
JMSF050G16Sequence649003902 (3)emb|CDP16924.1|4e-30unnamed protein product [Coffea canephora]605003902 (3)emb|CDP16924.1|3e-30unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF012F14+                                                            TGATTGCCCA
                      ____________________________________________________________
consensus                                                               TGATTGCCCA
 
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rJMSF012F14+          TGTAACTAGGTGCACCACTCCAACACAAGCCGAATATATACTGGATCTGCAGAAGCAGCT
                      ____________________________________________________________
consensus             TGTAACTAGGTGCACCACTCCAACACAAGCCGAATATATACTGGATCTGCAGAAGCAGCT
 
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rJMSF012F14+          TACTTTGCTGGGCAGTGAACCCAGGAAGGAGTCAAATGGTGCCTTGTCTGAAGATCAACC
rJMSF050G16+                         TGAACCCAGGAAGGAGTCAAATGGTGCCTTGTCTGAAGATCAACC
JMSF050G16-                          TGAACCCAGGAAGGAGTCAAATGGTGCCTTGTCTGAAGATCAACC
                      ____________________________________________________________
consensus             TACTTTGCTGGGCAGTGAACCCAGGAAGGAGTCAAATGGTGCCTTGTCTGAAGATCAACC
 
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rJMSF012F14+          AATAGCTAGCTTGACCCCCATTGAGAAGATTCGGTCACAGCTAGATGATGCCATCGCCAG
rJMSF050G16+          AATAGCTAGCTTGACCCCCATTGAGAAGATTCGGTCACAGCTAGATGATGCCATCGCCAG
JMSF050G16-           AATAGCTAGCTTGACCCCCATTGAGAAGATTCGGTCACAGCTAGATGATGCCATCGCCAG
                      ____________________________________________________________
consensus             AATAGCTAGCTTGACCCCCATTGAGAAGATTCGGTCACAGCTAGATGATGCCATCGCCAG
 
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rJMSF012F14+          TGAGTGCCCATATTGTGGTGACTTGATGATCCGTGAAATCTCTTTACCTTTCATCGTGAC
rJMSF050G16+          TGAGTGCCCATATTGTGGTGACTTGATGATCCGTGAAATCTCTTTACCTTTCATCGTGAC
JMSF050G16-           TGAGTGCCCATATTGTGGTGACTTGATGATCCGTGAAATCTCTTTACCTTTCATCGTGAC
                      ____________________________________________________________
consensus             TGAGTGCCCATATTGTGGTGACTTGATGATCCGTGAAATCTCTTTACCTTTCATCGTGAC
 
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rJMSF012F14+          TGAAGAAGTACAAGAAGTAGCATCATGGGAAATAAAGCCACATAACCCTGGGAGTCAGCC
rJMSF050G16+          TGAAGAAGTACAAGAAGTAGCATCATGGGAAATAAAGCCACATAACCCTGGGAGTCAGCC
JMSF050G16-           TGAAGAAGTACAAGAAGTAGCATCATGGGAAATAAAGCCACATAACCCTGGGAGTCAGCC
                      ____________________________________________________________
consensus             TGAAGAAGTACAAGAAGTAGCATCATGGGAAATAAAGCCACATAACCCTGGGAGTCAGCC
 
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rJMSF012F14+          TCAGAGAAGCCTATCTTTATCTGCATGATCAAATAATGCTCGTGTGCGAAATTCATGTTT
rJMSF050G16+          TCAGAGAAGCCTATCTTTATCTGCATGATCAAATAATGCTCGTGTGCGAAATTCATGTTT
JMSF050G16-           TCAGAGAAGCCTATCTTTATCTGCATGATCAAATAATGCTCGTGTGCGAAATTCATGTTT
                      ____________________________________________________________
consensus             TCAGAGAAGCCTATCTTTATCTGCATGATCAAATAATGCTCGTGTGCGAAATTCATGTTT
 
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rJMSF012F14+          GCATAAGAGAGAAGTATTAGCTACATTAGCAAAACTCGGATGCCAAGACATTTCATCTGC
rJMSF050G16+          GCATAAGAGAGAAGTATTAGCTACATTAGCAAAACTCGGATGCCAAGACATTTCATCTGC
JMSF050G16-           GCATAAGAGAGAAGTATTAGCTACATTAGCAAAACTCGGATGCCAAGACATTTCATCTGC
                      ____________________________________________________________
consensus             GCATAAGAGAGAAGTATTAGCTACATTAGCAAAACTCGGATGCCAAGACATTTCATCTGC
 
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rJMSF012F14+          TGTGGATTGCCAGTCTGAGTTTGAACTGTGTGTCGTAGAAAGGCCCCATTGGTGGAGCCC
rJMSF050G16+          TGTGGATTGCCAGTCTGAGTTTGAACTGTGTGTCGTAGAAAGGCCCCATTGGTGGAGCCC
JMSF050G16-           TGTGGATTGCCAGTCTGAGTTTGAACTGTGTGTCGTAGAAAGGCCCCATTGGTGGAGCCC
                      ____________________________________________________________
consensus             TGTGGATTGCCAGTCTGAGTTTGAACTGTGTGTCGTAGAAAGGCCCCATTGGTGGAGCCC
 
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rJMSF012F14+          TCAGATGCTAGCATATTTGTGGAGCTCTTTCTGGTGATGAAATCTGCACCATCTTTATCT
rJMSF050G16+          TCAGATGCTAGCATATTTGTGGAGCTCTTTCTGGTGATGAAATCTGCACCATCTTTATCT
JMSF050G16-           TCAGATGCTAGCATATTTGTGGAGCTCTTTCTGGTGATGAAATCTGCACCATCTTTATCT
                      ____________________________________________________________
consensus             TCAGATGCTAGCATATTTGTGGAGCTCTTTCTGGTGATGAAATCTGCACCATCTTTATCT
 
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rJMSF012F14+          CTTTCACCCTTTTCTCAGCTTCCGACATGGTTTGTCTGCTCTTGCCTCTATTTCCATTGA
rJMSF050G16+          CTTTCACCCTTTTCTCAGCTTCCGACATGGTTTGTCTGCTCTTGCCTCTATTTCCATTGA
JMSF050G16-           CTTTCACCCTTTTCTCAGCTTCCGACATGGTTTGTCTGCTCTTGCCTCTATTTCCATTGA
                      ____________________________________________________________
consensus             CTTTCACCCTTTTCTCAGCTTCCGACATGGTTTGTCTGCTCTTGCCTCTATTTCCATTGA
 
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rJMSF012F14+          GATTATTGGTTGGTGGATACATGTGTTTGGCAAAGCATATTTAATGAGATTATATGATCA
rJMSF050G16+          GATTATTGGTTGGTGGATACATGTGTTTGGCAAAGCATATTTAATGAGATTATATGATC 
JMSF050G16-           GATTATTGGTTGGTGGATACATGTGTTTGGCAAAGCATATTTAATGAGATTATATGATCA
                      ____________________________________________________________
consensus             GATTATTGGTTGGTGGATACATGTGTTTGGCAAAGCATATTTAATGAGATTATATGATCA
 
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rJMSF012F14+          TTGTTACTATGCTTTTTTAAATTCTT                                  
JMSF050G16-           TTGTTACTATGCTTTTTTAAATTCTTTGTTTTATATAAACATAATAATACAAAAAAAAAA
                      ____________________________________________________________
consensus             TTGTTACTATGCTTTTTTAAATTCTTTGTTTTATATAAACATAATAATACAAAAAAAAAA