Contig 003900:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013I13Sequence379003900 (5)gb|ADV02780.1|5e-34putative 60S ribosomal protein L29 [Ipomoea batatas]
JMFN007I01Sequence323003900 (5)gb|ADV02780.1|3e-34putative 60S ribosomal protein L29 [Ipomoea batatas]
JMFN017H08Sequence389003900 (5)gb|ADV02780.1|6e-34putative 60S ribosomal protein L29 [Ipomoea batatas]
JMFN043O06Sequence482003900 (5)gb|ADV02780.1|2e-33putative 60S ribosomal protein L29 [Ipomoea batatas]
JMSF050B24Sequence407003900 (5)gb|ADV02780.1|7e-34putative 60S ribosomal protein L29 [Ipomoea batatas]

Alignment

This contig is upended


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JMFN043O06+                                                     AAAACACACAATCATCTG
                      ____________________________________________________________
consensus                                                       AAAACACACAATCATCTG
 
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JMFN043O06+           CCATTAACACCAAGAGGAAAAACATGAGGCATATCAAACCATCAAAAGCACAGGGTCTAT
                      ____________________________________________________________
consensus             CCATTAACACCAAGAGGAAAAACATGAGGCATATCAAACCATCAAAAGCACAGGGTCTAT
 
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JMFN043O06+           GAAGACACTAAAAGTGAACAACTGGAAAGGGAACAATCCTCAATAAAGGCAAAAACTTAA
JMFN017H08+                                 TGGAAAGGGAACAATCCTCAATAAAGGCAAAAACTTAA
rJMFF013I13-                                                            AAAAACTTAA
JMSF050B24+                                 TGGAAAGGGAACAATCCTCAATAAAGGCAAAAACTTAA
                      ____________________________________________________________
consensus             GAAGACACTAAAAGTGAACAACTGGAAAGGGAACAATCCTCAATAAAGGCAAAAACTTAA
 
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JMFN043O06+           TAGGTTATGTCAAAACATAATAATAGTAACCAAGTTTTGGCACTAGCTCAAAAACAACAA
JMFN007I01+                                AATAGTAACCAAGTTTTGGCACTAGCTCAAAAACAACAA
JMFN017H08+           TAGGTTATGTCAAAACATAATAATAGTAACCAAGTTTTGGCACTAGCTCAAAAACAACAA
rJMFF013I13-          TAGGTTATGTCAAAACATAATAATAGTAACCAAGTTTTGGCACTAGCTCAAAAACAACAA
JMSF050B24+           TAGGTTATGTCAAAACATAATAATAGTAACCAAGTTTTGGCACTAGCTCAAAAACAACAA
                      ____________________________________________________________
consensus             TAGGTTATGTCAAAACATAATAATAGTAACCAAGTTTTGGCACTAGCTCAAAAACAACAA
 
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JMFN043O06+           GTAGAATCCCAACATTCCAAAATCAAGGTGTATTTAACCTAAACACAAACAAGATCTACT
JMFN007I01+           GTAGAATCCCAACATTCCAAAATCAAGGTGTATTTAACCTAAACACAAACAAGATCTACT
JMFN017H08+           GTAGAATCCCAACATTCCAAAATCAAGGTGTATTTAACCTAAACACAAACAAGATCTACT
rJMFF013I13-          GTAGAATCCCAACATTCCAAAATCAAGGTGTATTTAACCTAAACACAAACAAGATCTACT
JMSF050B24+           GTAGAATCCCAACATTCCAAAATCAAGGTGTATTTAACCTAAACACAAACAAGATCTACT
                      ____________________________________________________________
consensus             GTAGAATCCCAACATTCCAAAATCAAGGTGTATTTAACCTAAACACAAACAAGATCTACT
 
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JMFN043O06+           CCTCTCCGCTTCCAGCTTCACCGCTCTTGTTGTTGTGCTTCCTAGCATACCTTTGGTTCC
JMFN007I01+           CCTCTCCGCTTCCAGCTTCACCGCTCTTGTTGTTGTGCTTCCTAGCATACCTTTGGTTCC
JMFN017H08+           CCTCTCCGCTTCCAGCTTCACCGCTCTTGTTGTTGTGCTTCCTAGCATACCTTTGGTTCC
rJMFF013I13-          CCTCTCCGCTTCCAGCTTCACCGCTCTTGTTGTTGTGCTTCCTAGCATACCTTTGGTTCC
JMSF050B24+           CCTCTCCGCTTCCAGCTTCACCGCTCTTGTTGTTGTGCTTCCTAGCATACCTTTGGTTCC
                      ____________________________________________________________
consensus             CCTCTCCGCTTCCAGCTTCACCGCTCTTGTTGTTGTGCTTCCTAGCATACCTTTGGTTCC
 
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JMFN043O06+           TCAAGAACTTAGGGTCCATCCCTTTGGTGGATGTGTGACGGTGCTTTCTGGGCTTCTTGA
JMFN007I01+           TCAAGAACTTAGGGTCCATCCCTTTGGTGGATGTGTGACGGTGCTTTCTGGGCTTCTTGA
JMFN017H08+           TCAAGAACTTAGGGTCCATCCCTTTGGTGGATGTGTGACGGTGCTTTCTGGGCTTCTTGA
rJMFF013I13-          TCAAGAACTTAGGGTCCATCCCTTTGGTGGATGTGTGACGGTGCTTTCTGGGCTTCTTGA
JMSF050B24+           TCAAGAACTTAGGGTCCATCCCTTTGGTGGATGTGTGACGGTGCTTTCTGGGCTTCTTGA
                      ____________________________________________________________
consensus             TCAAGAACTTAGGGTCCATCCCTTTGGTGGATGTGTGACGGTGCTTTCTGGGCTTCTTGA
 
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JMFN043O06+           TGCCATTCTTGTGCGCCTTGTAGGACTGGTTGTGAGCTGTGTGATTCTTTGACTTCGCCA
JMFN007I01+           TGCCATTCTTGTGCGCCTTGTAGGACTGGTTGTGAGCTGTGTGATTCTTTGACTTCGCCA
JMFN017H08+           TGCCATTCTTGTGCGCCTTGTAGGACTGGTTGTGAGCTGTGTGATTCTTTGACTTCGCCA
rJMFF013I13-          TGCCATTCTTGTGCGCCTTGTAGGACTGGTTGTGAGCTGTGTGATTCTTTGACTTCGCCA
JMSF050B24+           TGCCATTCTTGTGCGCCTTGTAGGACTGGTTGTGAGCTGTGTGATTCTTTGACTTCGCCA
                      ____________________________________________________________
consensus             TGCCATTCTTGTGCGCCTTGTAGGACTGGTTGTGAGCTGTGTGATTCTTTGACTTCGCCA
 
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JMFN043O06+           TTCCTGCTTCTCTTCCTCACGGAGGAACTGTGTTCGGGATTTCA                
JMFN007I01+           TTCCTGCTTCTCTTCCTCACGGAGGAACTGTGTTCGGGATTTCA                
JMFN017H08+           TTCCTGCTTCTCTTCCTCACGGAGGAACTGTGTTCGGGATTTCA                
rJMFF013I13-          TTCCTGCTTCTCTTCCTCACGGAGGAACTGTGTTCGGGATTTCAGCAGCTGCAACT    
JMSF050B24+           TTCCTGCTTCTCTTCCTCACGGAGGAACTGTGTTCGGGATTTCAGCAGCTGCAACTAGCC
                      ____________________________________________________________
consensus             TTCCTGCTTCTCTTCCTCACGGAGGAACTGTGTTCGGGATTTCAGCAGCTGCAACTAGCC