Contig 003899:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016L13Sequence246003899 (3)ref|XP_009801718.1|1e-07PREDICTED: probable serine/threonine-protein kinase At1g18390 [Nicotiana sylves735024520ref|XP_006344307.1|4e-106PREDICTED: probable receptor-like protein kinase At5g39020-like [Solanum tubero
JMSF020P20Sequence686003899 (3)ref|XP_009588465.1|2e-17PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Nicotian716001493 (2)emb|CDP00659.1|9e-61unnamed protein product [Coffea canephora]
JMSF049O08Sequence681003899 (3)ref|XP_009588465.1|1e-16PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Nicotian761001493 (2)emb|CDP00659.1|7e-53unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF020P20+                                         TTTTGTAATAACAGTCATAGCACGCAGGTG
JMSF049O08+                                               AATAACAGTCATAGCACGCAGGTG
                      ____________________________________________________________
consensus                                           TTTTGTAATAACAGTCATAGCACGCAGGTG
 
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JMSF020P20+           AGACTTGTAAGTAGAGTCCGAATTGAGCATTTGTTTGTTCGACGACAAGAATTGGAGTTG
JMSF049O08+           AGACTTGTAAGTAGAGTCCGAATTGAGCATTTGTTTGTTCGACGACAAGAATTGGAGTTG
                      ____________________________________________________________
consensus             AGACTTGTAAGTAGAGTCCGAATTGAGCATTTGTTTGTTCGACGACAAGAATTGGAGTTG
 
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JMSF020P20+           GATACAGGGTACAGTTAGCCGCAGTATCACATTTGGGATTATTCTCTGGAACCAACTCAC
JMSF049O08+           GATACAGGGTACAGTTAGCCGCAGTATCACATTTGGGATTATTCTCTGGAACCAACTCAC
                      ____________________________________________________________
consensus             GATACAGGGTACAGTTAGCCGCAGTATCACATTTGGGATTATTCTCTGGAACCAACTCAC
 
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JMSF020P20+           TTTTATACTTCAAACTAAATCCATCCGTACAGCTGTACCTTTCATAATTGCCCATATCAT
JMSF049O08+           TTTTATACTTCAAACTAAATCCATCCGTACAGCTGTACCTTTCATAATTGCCCATATCAT
                      ____________________________________________________________
consensus             TTTTATACTTCAAACTAAATCCATCCGTACAGCTGTACCTTTCATAATTGCCCATATCAT
 
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JMSF020P20+           CATCAGCTTGAATGAAATTGCATTTCAAAAAGGGGGAGTTCAATTCCTCTGCTTCCAAAT
JMSF049O08+           CATCAGCTTGAATGAAATTGCATTTCAAAAAGGGGGAGTTCAATTCCTCTGCTTCCAAAT
                      ____________________________________________________________
consensus             CATCAGCTTGAATGAAATTGCATTTCAAAAAGGGGGAGTTCAATTCCTCTGCTTCCAAAT
 
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JMSF020P20+           TGCGGAAGGTGATAGAAGGAGAATACGGGAATTGGACGCTGTAGTTTAAATTTGAGTAAT
JMSF049O08+           TGCGGAAGGTGATAGAAGGAGAATACGGGAATTGGACGCTGTAGTTTAAATTTGAGTAAT
                      ____________________________________________________________
consensus             TGCGGAAGGTGATAGAAGGAGAATACGGGAATTGGACGCTGTAGTTTAAATTTGAGTAAT
 
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JMSF020P20+           TAGGGCACTTAAGTAGTCTCTGAAGCTTTACGTCTCCCAGGAAGATCACATATTCACCCC
JMSF049O08+           TAGGGCACTTAAGTAGTCTCTGAAGCTTTACGTCTCCCAGGAAGATCACATATTCACCCC
                      ____________________________________________________________
consensus             TAGGGCACTTAAGTAGTCTCTGAAGCTTTACGTCTCCCAGGAAGATCACATATTCACCCC
 
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JMSF020P20+           AGACAGGATATGGTTTCACACGCAGAAGCTGATACGAATCTCCCCCCGTTCCCAACTGGA
JMSF049O08+           AGACAGGATATGGTTTCACACGCAGAAGCTGATACGAATCTCCCCCCGTTCCCAACTGGA
                      ____________________________________________________________
consensus             AGACAGGATATGGTTTCACACGCAGAAGCTGATACGAATCTCCCCCCGTTCCCAACTGGA
 
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JMSF016L13+                                                 CCACAATGAGGCTGCGTGTGTT
JMSF020P20+           GTGTTGGAGGTGTTGCAGAACAATTTACTACGACTAACCCACAATGAGGCTGCGTGTGTT
JMSF049O08+           GTGTTGGAGGTGTTGCAGAACAATTTACTACGACTAACCCACAATGAGGCTGCGTGTGTT
                      ____________________________________________________________
consensus             GTGTTGGAGGTGTTGCAGAACAATTTACTACGACTAACCCACAATGAGGCTGCGTGTGTT
 
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JMSF016L13+           GAGCAAAAGGGAACTCCAGATAACCCATACTTCCACAGAGGAATCCCTTCGTACAATTAG
JMSF020P20+           GAACAAAAGGGAACTCCAGATAACCCACACTTCCACAGGGGAATTCCTTCGTACAATTAG
JMSF049O08+           GAACAAAAGGGAACTCCAGATAACCCACACTTCCACAGGGGAATTCCTTCGTACAATTAG
                      ____________________________________________________________
consensus             GAACAAAAGGGAACTCCAGATAACCCACACTTCCACAGGGGAATTCCTTCGTACAATTAG
 
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JMSF016L13+           ATGGCAAAAACTCATCTTCTCCATGAGCAAAGTATAAAAAGAGCATTAAGGGAAAGAGAA
JMSF020P20+           ATGCCAAAAACTCATCTTCTCCATGAGCAAAGTATAAAAAGAGCATTAAGGAAAAGAGAA
JMSF049O08+           ATGCCAAAAACTCATCTTCTCCATGAGCAAAGTATAAAAAGAGCATTAAGGAAAAGAGAA
                      ____________________________________________________________
consensus             ATGCCAAAAACTCATCTTCTCCATGAGCAAAGTATAAAAAGAGCATTAAGGAAAAGAGAA
 
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JMSF016L13+           GGAAGAAACTAGAAGGATTAAAGAGTAGACCCATACCAGCTTTCTTCTTCTTCTC     
JMSF020P20+           GGAAGAAAC---AAGGATTAAAGGGCACACCCATACCAGCTTTCTTCTTCTTCTC     
JMSF049O08+           GGAAGAAAC---AAGGATTAAAGGGCACACCCATACCAGCTTTCTTCTTCTTCTCCTTCC
                      ____________________________________________________________
consensus             GGAAGAAAC---AAGGATTAAAGGGCACACCCATACCAGCTTTCTTCTTCTTCTCCTTCC