Contig 003895:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS062D01Sequence621003895 (3)ref|XP_009610712.1|2e-18PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog isoform X
JMSF003G12Sequence287003895 (3)ref|XP_004238864.1|2e-14PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Solanum 669014120 (2)ref|XP_004238864.1|3e-14PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Solanum
JMSF049J04Sequence744003895 (3)ref|XP_009610712.1|2e-18PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog isoform X753014120 (2)ref|XP_004238864.1|4e-14PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Solanum

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF049J04+ TNGGAANGGTGCAGTACATAAAGC
                      ____________________________________________________________
consensus TNGGAANGGTGCAGTACATAAAGC
 
. : . : . : . : . : . :
JMFS062D01+ AATAATAATACTTTTTATGCATTATTAGGTTTCTAATTCAATGAAA
JMSF049J04+ TACAGGACAAAAGCAATAATAATACTTTTTATGCATTATTAGGTTTCTAATTCAATGAAA
                      ____________________________________________________________
consensus TACAGGACAAAAGCAATAATAATACTTTTTATGCATTATTAGGTTTCTAATTCAATGAAA
 
. : . : . : . : . : . :
JMFS062D01+ AAGTTTATTTTTTCTGAGATAATCTTCTGCTATCTCATCTGAAGGAAGCAAAAAAGGCCA
JMSF049J04+ AAGTTTATTTTTTCTGAGATAATCTTCTGCTATCTCATCTGAAGGAAGCAAAAAAGGCCA
                      ____________________________________________________________
consensus AAGTTTATTTTTTCTGAGATAATCTTCTGCTATCTCATCTGAAGGAAGCAAAAAAGGCCA
 
. : . : . : . : . : . :
JMFS062D01+ AAGAGAGAAATTTGACTATAAGTAAGACACATGGCACATGGATGACAGCTATTCTTTGAT
JMSF049J04+ AAGAGAGAAATTTGACTATAAGTAAGACACATGGCACATGGATGACAGCTATTCTTTGAT
                      ____________________________________________________________
consensus AAGAGAGAAATTTGACTATAAGTAAGACACATGGCACATGGATGACAGCTATTCTTTGAT
 
. : . : . : . : . : . :
JMFS062D01+ ATCTTGGACTGAGATCATAGAAAGCAAGAAAAGTATAAATGAGCACAGAAAACAAAATCA
JMSF049J04+ ATCTTGGACTGAGATCATAGAAAGCAAGAAAAGTATAAATGAGCACAGAAAACAAAATCA
                      ____________________________________________________________
consensus ATCTTGGACTGAGATCATAGAAAGCAAGAAAAGTATAAATGAGCACAGAAAACAAAATCA
 
. : . : . : . : . : . :
JMFS062D01+ CCTATGTACTTGTTCAAAAACATAAAATGGAGTATGATTTGTATCAGAGTACATGAGCTA
JMSF049J04+ CCTATGTACTTGTTCAAAAACATAAAATGGAGTATGATTTGTATCAGAGTACATGAGCTA
                      ____________________________________________________________
consensus CCTATGTACTTGTTCAAAAACATAAAATGGAGTATGATTTGTATCAGAGTACATGAGCTA
 
. : . : . : . : . : . :
JMFS062D01+ CAAACAATTTAAGTAATCAATTCAGTTAACCTCATTCTCCAAACTGAGAGACAGCTTCTT
JMSF049J04+ CAAACAATTTAAGTAATCAATTCAGTTAACCTCATTCTCCAAACTGAGAGACAGCTTCTT
                      ____________________________________________________________
consensus CAAACAATTTAAGTAATCAATTCAGTTAACCTCATTCTCCAAACTGAGAGACAGCTTCTT
 
. : . : . : . : . : . :
JMFS062D01+ ATCTGTTCCTGTATGTTTGCCTTGAAAACAAAGGGCAAAAGAACTTTTAACATCCTTAGA
JMSF049J04+ ATCTGTTCCTGTATGTTTGCCTTGAAAACAAAGGGCAAAAGAACTTTTAACATCCTTAGA
                      ____________________________________________________________
consensus ATCTGTTCCTGTATGTTTGCCTTGAAAACAAAGGGCAAAAGAACTTTTAACATCCTTAGA
 
. : . : . : . : . : . :
JMFS062D01+ TAGTCAAAATAGAACATAGTTCACTTGCCACCAACTATCATACTTACAAGAGTAAGGTTC
JMSF003G12+ CAAGAGTAAGGTTC
JMSF049J04+ TAGTCAAAATAGAACATAGTTCACTTGCCAATAACTATCATACTTACAAGAGTAAGGTTC
                      ____________________________________________________________
consensus TAGTCAAAATAGAACATAGTTCACTTGCCACTAACTATCATACTTACAAGAGTAAGGTTC
 
. : . : . : . : . : . :
JMFS062D01+ AAGACATCCCTTAACCGTGCGCTCTCCAAGGTTCACATGACTCAAAAATTCACTTATACG
JMSF003G12+ AAGACATCCCTTAACCGTGCGCTCTCCAAGGTTCACATGACTCAAAAATTCACTTATACG
JMSF049J04+ AAGACATCCCTTAACCGTGCGCTCTCCAAGGTTCACATGACTCAAAAATTCACTTATACG
                      ____________________________________________________________
consensus AAGACATCCCTTAACCGTGCGCTCTCCAAGGTTCACATGACTCAAAAATTCACTTATACG
 
. : . : . : . : . : . :
JMFS062D01+ ATCAAGTGGAGTGTATTCCAGGTACTTCATTGCAAATATATCAGAATGATAC----CTAT
JMSF003G12+ ATCAAGTGGAGTGTATTCCAGGTACTTCATTGCAAATATATCAGAATGATACCTAGCTAT
JMSF049J04+ ATCAAGTGGAGTGTATTCCAGGTACTTCATTGCAAATATATCAGAATGATACCTAGCTAT
                      ____________________________________________________________
consensus ATCAAGTGGAGTGTATTCCAGGTACTTCATTGCAAATATATCAGAATGATACCTAGCTAT
 
. : . : . : . : . : . :
JMFS062D01+ TTTCAACGTCGAGAGAGAGAACTTAGCGCTCGAATCAAA
JMSF003G12+ TTTCAACGTCGAGAGAGAGAACTTAGCGCTCGAATCAAACAGTCGCTGATTTATTTGCGT
JMSF049J04+ TTTCAACGTCGAGAGAGAGAACTTAGCGCTCGAATCAAACAGTCGCTGATTTATTTGCGT
                      ____________________________________________________________
consensus TTTCAACGTCGAGAGAGAGAACTTAGCGCTCGAATCAAACAGTCGCTGATTTATTTGCGT
 
. : . : . : . : . : . :
JMSF003G12+ TTTTAAGGGATATACGAATATAGGAAAGAGAACACAGACGGGGGAAGAACCCT
JMSF049J04+ TTTTAAGGGATATACGAATATAGGAAAGAGAACACAGACGGGGGAAGAACCCTAAATGCC
                      ____________________________________________________________
consensus TTTTAAGGGATATACGAATATAGGAAAGAGAACACAGACGGGGGAAGAACCCTAAATGCC