Contig 003895:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS062D01Sequence621003895 (3)ref|XP_009610712.1|2e-18PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog isoform X
JMSF003G12Sequence287003895 (3)ref|XP_004238864.1|2e-14PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Solanum 669014120 (2)ref|XP_004238864.1|3e-14PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Solanum
JMSF049J04Sequence744003895 (3)ref|XP_009610712.1|2e-18PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog isoform X753014120 (2)ref|XP_004238864.1|4e-14PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Solanum

Alignment

This contig is upended


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JMSF049J04+                                               TNGGAANGGTGCAGTACATAAAGC
                      ____________________________________________________________
consensus                                                 TNGGAANGGTGCAGTACATAAAGC
 
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JMFS062D01+                         AATAATAATACTTTTTATGCATTATTAGGTTTCTAATTCAATGAAA
JMSF049J04+           TACAGGACAAAAGCAATAATAATACTTTTTATGCATTATTAGGTTTCTAATTCAATGAAA
                      ____________________________________________________________
consensus             TACAGGACAAAAGCAATAATAATACTTTTTATGCATTATTAGGTTTCTAATTCAATGAAA
 
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JMFS062D01+           AAGTTTATTTTTTCTGAGATAATCTTCTGCTATCTCATCTGAAGGAAGCAAAAAAGGCCA
JMSF049J04+           AAGTTTATTTTTTCTGAGATAATCTTCTGCTATCTCATCTGAAGGAAGCAAAAAAGGCCA
                      ____________________________________________________________
consensus             AAGTTTATTTTTTCTGAGATAATCTTCTGCTATCTCATCTGAAGGAAGCAAAAAAGGCCA
 
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JMFS062D01+           AAGAGAGAAATTTGACTATAAGTAAGACACATGGCACATGGATGACAGCTATTCTTTGAT
JMSF049J04+           AAGAGAGAAATTTGACTATAAGTAAGACACATGGCACATGGATGACAGCTATTCTTTGAT
                      ____________________________________________________________
consensus             AAGAGAGAAATTTGACTATAAGTAAGACACATGGCACATGGATGACAGCTATTCTTTGAT
 
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JMFS062D01+           ATCTTGGACTGAGATCATAGAAAGCAAGAAAAGTATAAATGAGCACAGAAAACAAAATCA
JMSF049J04+           ATCTTGGACTGAGATCATAGAAAGCAAGAAAAGTATAAATGAGCACAGAAAACAAAATCA
                      ____________________________________________________________
consensus             ATCTTGGACTGAGATCATAGAAAGCAAGAAAAGTATAAATGAGCACAGAAAACAAAATCA
 
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JMFS062D01+           CCTATGTACTTGTTCAAAAACATAAAATGGAGTATGATTTGTATCAGAGTACATGAGCTA
JMSF049J04+           CCTATGTACTTGTTCAAAAACATAAAATGGAGTATGATTTGTATCAGAGTACATGAGCTA
                      ____________________________________________________________
consensus             CCTATGTACTTGTTCAAAAACATAAAATGGAGTATGATTTGTATCAGAGTACATGAGCTA
 
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JMFS062D01+           CAAACAATTTAAGTAATCAATTCAGTTAACCTCATTCTCCAAACTGAGAGACAGCTTCTT
JMSF049J04+           CAAACAATTTAAGTAATCAATTCAGTTAACCTCATTCTCCAAACTGAGAGACAGCTTCTT
                      ____________________________________________________________
consensus             CAAACAATTTAAGTAATCAATTCAGTTAACCTCATTCTCCAAACTGAGAGACAGCTTCTT
 
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JMFS062D01+           ATCTGTTCCTGTATGTTTGCCTTGAAAACAAAGGGCAAAAGAACTTTTAACATCCTTAGA
JMSF049J04+           ATCTGTTCCTGTATGTTTGCCTTGAAAACAAAGGGCAAAAGAACTTTTAACATCCTTAGA
                      ____________________________________________________________
consensus             ATCTGTTCCTGTATGTTTGCCTTGAAAACAAAGGGCAAAAGAACTTTTAACATCCTTAGA
 
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JMFS062D01+           TAGTCAAAATAGAACATAGTTCACTTGCCACCAACTATCATACTTACAAGAGTAAGGTTC
JMSF003G12+                                                         CAAGAGTAAGGTTC
JMSF049J04+           TAGTCAAAATAGAACATAGTTCACTTGCCAATAACTATCATACTTACAAGAGTAAGGTTC
                      ____________________________________________________________
consensus             TAGTCAAAATAGAACATAGTTCACTTGCCACTAACTATCATACTTACAAGAGTAAGGTTC
 
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JMFS062D01+           AAGACATCCCTTAACCGTGCGCTCTCCAAGGTTCACATGACTCAAAAATTCACTTATACG
JMSF003G12+           AAGACATCCCTTAACCGTGCGCTCTCCAAGGTTCACATGACTCAAAAATTCACTTATACG
JMSF049J04+           AAGACATCCCTTAACCGTGCGCTCTCCAAGGTTCACATGACTCAAAAATTCACTTATACG
                      ____________________________________________________________
consensus             AAGACATCCCTTAACCGTGCGCTCTCCAAGGTTCACATGACTCAAAAATTCACTTATACG
 
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JMFS062D01+           ATCAAGTGGAGTGTATTCCAGGTACTTCATTGCAAATATATCAGAATGATAC----CTAT
JMSF003G12+           ATCAAGTGGAGTGTATTCCAGGTACTTCATTGCAAATATATCAGAATGATACCTAGCTAT
JMSF049J04+           ATCAAGTGGAGTGTATTCCAGGTACTTCATTGCAAATATATCAGAATGATACCTAGCTAT
                      ____________________________________________________________
consensus             ATCAAGTGGAGTGTATTCCAGGTACTTCATTGCAAATATATCAGAATGATACCTAGCTAT
 
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JMFS062D01+           TTTCAACGTCGAGAGAGAGAACTTAGCGCTCGAATCAAA                     
JMSF003G12+           TTTCAACGTCGAGAGAGAGAACTTAGCGCTCGAATCAAACAGTCGCTGATTTATTTGCGT
JMSF049J04+           TTTCAACGTCGAGAGAGAGAACTTAGCGCTCGAATCAAACAGTCGCTGATTTATTTGCGT
                      ____________________________________________________________
consensus             TTTCAACGTCGAGAGAGAGAACTTAGCGCTCGAATCAAACAGTCGCTGATTTATTTGCGT
 
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JMSF003G12+           TTTTAAGGGATATACGAATATAGGAAAGAGAACACAGACGGGGGAAGAACCCT       
JMSF049J04+           TTTTAAGGGATATACGAATATAGGAAAGAGAACACAGACGGGGGAAGAACCCTAAATGCC
                      ____________________________________________________________
consensus             TTTTAAGGGATATACGAATATAGGAAAGAGAACACAGACGGGGGAAGAACCCTAAATGCC