| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF046D03 | Sequence | 456 | 003890 (2) | ref|XP_009618472.1| | 1e-69 | PREDICTED: cysteine desulfurase 1, mitochondrial [Nicotiana tomentosiformis] | 667 | 013917 (7) | ref|XP_006367305.1| | 4e-104 | PREDICTED: lysophospholipid acyltransferase LPEAT1-like isoform X1 [Solanum tub |
| JMSF048O11 | Sequence | 626 | 003890 (2) | emb|CDP02654.1| | 7e-107 | unnamed protein product [Coffea canephora] | 765 | 015180 | gb|ACI47522.1| | 6e-90 | iron-sulfer cluster scaffold protein NFS1, partial [Eucalyptus grandis] |
This contig is upended
. : . : . : . : . : . :
JMSF048O11+ TTGTCTAGGTTAATAAGCCCGTCGGG
____________________________________________________________
consensus TTGTCTAGGTTAATAAGCCCGTCGGG
. : . : . : . : . : . :
JMSF048O11+ TTCAACGGGAAGGTAAGTAACATCAAAGCCCTCTTGCTGCAGATGGCGGCACGAATCAAG
____________________________________________________________
consensus TTCAACGGGAAGGTAAGTAACATCAAAGCCCTCTTGCTGCAGATGGCGGCACGAATCAAG
. : . : . : . : . : . :
JMSF046D03+ TGTGGTGATGACGTGGCGNTTCTTCTCCCTGTAGAAATG
JMSF048O11+ TACGCACTTGTGCTCAGTCTGTGTGGTGATGACGTGGCGCTTCTTCTCCCTGTAGAAATG
____________________________________________________________
consensus TACGCACTTGTGCTCAGTCTGTGTGGTGATGACGTGGCGCTTCTTCTCCCTGTAGAAATG
. : . : . : . : . : . :
JMSF046D03+ CAGANCGCCTTTAACGGAGATGTTATTGGATTCNGTAGCACCGGAAGTGAAGATAATCTC
JMSF048O11+ CAGAACGCCTTTAACGGAGATGTTATTGGATTCAGTAGCACCGGAAGTGAAGATAATCTC
____________________________________________________________
consensus CAGAACGCCTTTAACGGAGATGTTATTGGATTCAGTAGCACCGGAAGTGAAGATAATCTC
. : . : . : . : . : . :
JMSF046D03+ CTTCGGAGAAGCGTTAATTAGGGTCGCAACTTGCGCCCGGTCCGTCTCGNCGTCCTGGTC
JMSF048O11+ CTTCGGAGAAGCGTTAATTAGGGTCGCAACTTGCGCCCGGGCCGTCTCGACGGCCTGGTC
____________________________________________________________
consensus CTTCGGAGAAGCGTTAATTAGGGTCGCAACTTGCGCCCGGTCCGTCTCGACGTCCTGGTC
. : . : . : . : . : . :
JMSF046D03+ CGNTTCCCANCCGTAGAGGTGAGTCCGAGAGTGAGGGTTCCCGAATCGCGAGAGATAATA
JMSF048O11+ CGATTCCCAGCCGTAGAGGTGAGTCCGAGAGTGAGGGTTCCCGAATCGCGAGAGATAATA
____________________________________________________________
consensus CGATTCCCAGCCGTAGAGGTGAGTCCGAGAGTGAGGGTTCCCGAATCGCGAGAGATAATA
. : . : . : . : . : . :
JMSF046D03+ AGGGAGCATGGCGTCAAGCACACGCGGATCCACCGGAGAAGTGGCCTGCATATCCAGGTA
JMSF048O11+ AGGGAGCATGGCGTCAAGCACACGCGGATCCACCGGAGAAGTGGCCTGCATATCCAGGTA
____________________________________________________________
consensus AGGGAGCATGGCGTCAAGCACACGCGGATCCACCGGAGAAGTGGCCTGCATATCCAGGTA
. : . : . : . : . : . :
JMSF046D03+ GAGAGGTCTTCCGGAGATCTTCACTCCTTTCATGGTGACTCCAGCTGTTTNTTCCTCATA
JMSF048O11+ GAGAGGTCTTCCGGAGATCTTCACTCCTTTCATGGTGACTCCAGCTGTTTCTTCCTCATA
____________________________________________________________
consensus GAGAGGTCTTCCGGAGATCTTCACTCCTTTCATGGTGACTCCAGCTGTTTCTTCCTCATA
. : . : . : . : . : . :
JMSF046D03+ GGGCTCTACTCCCGCCGCCGCCGCAGCAGAGGTCGANAAAGGGCGGAGAATGGCGTAGGG
JMSF048O11+ GGGCTCTACTCCCGCCGCCGCCGCAGCAGAGGTCGAAAAAGGGCGGAGAATGGCGTAGGG
____________________________________________________________
consensus GGGCTCTACTCCCGCCGCCGCCGCAGCAGAGGTCGAAAAAGGGCGGAGAATGGCGTAGGG
. : . : . : . : . : . :
JMSF046D03+ TTTATCAAACGAGCGGCGGAAAA
JMSF048O11+ TTTATCAAACGAGCGGCGGAAAACGGCGGCTAGAAGCTTCGAGGCCATCGTTATGAATCA
____________________________________________________________
consensus TTTATCAAACGAGCGGCGGAAAACGGCGGCTAGAAGCTTCGAGGCCATCGTTATGAATCA
. : . : . : . : . : . :
JMSF048O11+ AACAATTATGCTCCGATGAAGAATCGACTCTTTAACGCCGACGAGTTGATTCTAAACTCC
____________________________________________________________
consensus AACAATTATGCTCCGATGAAGAATCGACTCTTTAACGCCGACGAGTTGATTCTAAACTCC