Contig 003888:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS068H05Sequence600003888 (4)ref|XP_009786487.1|4e-43PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMFS100E06Sequence625003888 (4)ref|XP_010323707.1|6e-105PREDICTED: auxin response factor 1 isoform X1 [Solanum lycopersicum]
JMSF003N10Sequence338003888 (4)ref|XP_009786487.1|3e-29PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR541011242 (2)
JMSF048K08Sequence607003888 (4)ref|XP_009786487.1|2e-40PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR514011242 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS100E06+ GAAAATGCCATTCATTGGCATGAAGATCCGTAGAAA
                      ____________________________________________________________
consensus GAAAATGCCATTCATTGGCATGAAGATCCGTAGAAA
 
. : . : . : . : . : . :
JMFS100E06+ CCAATTCCTGCCACGGTGGCTGTTGAGACATATCCAGTGGGGGCAAACACTCATCTGCAT
                      ____________________________________________________________
consensus CCAATTCCTGCCACGGTGGCTGTTGAGACATATCCAGTGGGGGCAAACACTCATCTGCAT
 
. : . : . : . : . : . :
JMFS100E06+ GCCGCCGAAGAACAGAGAATCCACCATGGGTGCTTGTATCAGATGCAGTGAGTGTCTTGC
                      ____________________________________________________________
consensus GCCGCCGAAGAACAGAGAATCCACCATGGGTGCTTGTATCAGATGCAGTGAGTGTCTTGC
 
. : . : . : . : . : . :
JMFS100E06+ AAAATGAATGGACATTACATTGTTCTGGTTCAGGGAGAGGAGGATCAGGGCTTGTGATCT
                      ____________________________________________________________
consensus AAAATGAATGGACATTACATTGTTCTGGTTCAGGGAGAGGAGGATCAGGGCTTGTGATCT
 
. : . : . : . : . : . :
JMFS100E06+ CACTTTGCTCTGGTTCAGGAAGCAGAGTTATTTGAGCATACACCTCATCTGTCTCAGGTT
JMFS068H05+ CCTCATCTGTCTCAGGTT
                      ____________________________________________________________
consensus CACTTTGCTCTGGTTCAGGAAGCAGAGTTATTTGAGCATACACCTCATCTGTCTCAGGTT
 
. : . : . : . : . : . :
JMFS100E06+ CAGCCCGAAGAAAAACATTCATAACTTTGCACAGAATCTTAGCTGGCAAGTCAAATGAAG
JMSF003N10+ TGAAG
JMFS068H05+ CAGCCCGAAGAAAAACATTCATAACTTTGCACAGAATCTTAGCTGGCAAGTCAAATGAAG
JMSF048K08+ AACATTCATAACTTTGCACAGAATCTTAGCTGGCAAGTCAAATGAAG
                      ____________________________________________________________
consensus CAGCCCGAAGAAAAACATTCATAACTTTGCACAGAATCTTAGCTGGCAAGTCAAATGAAG
 
. : . : . : . : . : . :
JMFS100E06+ GAAGCTGCTGATCAAATCCCTGATGAGTGGATGCTTCAAGCTGTTCCATATGACCTTGTG
JMSF003N10+ GAAGCTGCTGATCCAATCCCTGATGAGTGGATGCTTCNAGCTGTTCCATATGACCTTGTG
JMFS068H05+ GAAGCTGCTGATCCAATCCCTGATGAGTGGATGCTTCAAGCTGTTCCATATGACCTTGTG
JMSF048K08+ GAAGCTGCTGATCCAATCCCTGATGAGTGGATGCTTCAAGCTGTTCCATATGACCTTGTG
                      ____________________________________________________________
consensus GAAGCTGCTGATCCAATCCCTGATGAGTGGATGCTTCAAGCTGTTCCATATGACCTTGTG
 
. : . : . : . : . : . :
JMFS100E06+ GAAAATAATAAACCCTTTCTCCTTCCCGTGGAAGTGTCACAAGTGGTCCAGCACAAGCAT
JMSF003N10+ GAAAATAATAAACCCTTTCTCCTTCCCGTGGAAGTGTCACAAGTGGTCCAGCACAAGCAT
JMFS068H05+ GAAAATAATAAACCCTTTCTCCTTCCCGTGGAAGTGTCACAAGTGGTCCAGCACAAGCAT
JMSF048K08+ GAAAATAATAAACCCTTTCTCCTTCCCGTGGAAGTGTCACAAGTGGTCCAGCACAAGCAT
                      ____________________________________________________________
consensus GAAAATAATAAACCCTTTCTCCTTCCCGTGGAAGTGTCACAAGTGGTCCAGCACAAGCAT
 
. : . : . : . : . : . :
JMFS100E06+ GCCAGAGTTCCTTGTACAAAGGATCATGTGAAGAAGCTGGATAAGCTCCTCTAAACTGAT
JMSF003N10+ GCCAGAGTTCCTTGTACAAAGGATCATGTGAAG
JMFS068H05+ GCCAGAGTTCCTTGTACAAAGGATCATGTGAAGAAGCTGGATAAGCTCCTCTAAACTGAT
JMSF048K08+ GCCAGAGTTCCTTGTACAAAGGATCATGTGAAGAAGCTGGATAAGCTCCTCTAAACTGAT
                      ____________________________________________________________
consensus GCCAGAGTTCCTTGTACAAAGGATCATGTGAAGAAGCTGGATAAGCTCCTCTAAACTGAT
 
. : . : . : . : . : . :
JMFS100E06+ TTGCCACAACGTGAGCCATTATATAACTTGAAGCCCCAAATTTGTGTGATAGTATCTCTC
JMFS068H05+ TTGCCACAACGTGAGCCATTATATAACTTGAAGCCCCAAATTTGTGTGATAGTATCTCTC
JMSF048K08+ TTGCCACAACGTGAGCCATTATATAACTTGAAGCCCCAAATTTGTGTGATAGTATCTCTC
                      ____________________________________________________________
consensus TTGCCACAACGTGAGCCATTATATAACTTGAAGCCCCAAATTTGTGTGATAGTATCTCTC
 
. : . : . : . : . : . :
JMFS100E06+ AACCAAATGATGCAATCTTGCTTGTACAAGATGTCAGCGCTATGCAAAA
JMFS068H05+ AACCAAATGATGCAATCTTGCTTGTACAAGATGTCAGCGCTATGCAAAACAATACAGATA
JMSF048K08+ AACCAAATGATGCAATCTTGCTTGTACAAGATGTCAGCGCTATGCAAAACAATACAGATA
                      ____________________________________________________________
consensus AACCAAATGATGCAATCTTGCTTGTACAAGATGTCAGCGCTATGCAAAACAATACAGATA
 
. : . : . : . : . : . :
JMFS068H05+ TAGATTTCAGGTATCCACAACAATGCCAACAGTCCCCGCCAAAAAGCTCGAAAAATCCGC
JMSF048K08+ TAGATTTCAGGTATCCACAACAATGCCAACAGTCCCCGCCAAAAAGCTCGAAAAATCCGC
                      ____________________________________________________________
consensus TAGATTTCAGGTATCCACAACAATGCCAACAGTCCCCGCCAAAAAGCTCGAAAAATCCGC
 
. : . : . : . : . : . :
JMFS068H05+ CATTTCCACAAATAGCTATGTGCTATCACGTTAGAGGCAGCAGCTCCAATTGATCGATCA
JMSF048K08+ CATTTCCACAAATAGCTATGTGCTATCACGTTAGAGGCAGCAGCTCCAATTGATCGATCA
                      ____________________________________________________________
consensus CATTTCCACAAATAGCTATGTGCTATCACGTTAGAGGCAGCAGCTCCAATTGATCGATCA
 
. : . : . : . : . : . :
JMFS068H05+ GTAGACACCAATAATTAGGGTTTTGACGAAGAGTAAAGCTGCAAACTTTAGAGAGAGAAA
JMSF048K08+ GTAGACACCAATAATTAGGGTTTTGACGAAGAGTAAAGCTGCAAACTTTAGAGAGAGAAA
                      ____________________________________________________________
consensus GTAGACACCAATAATTAGGGTTTTGACGAAGAGTAAAGCTGCAAACTTTAGAGAGAGAAA
 
. : . : . : . : . : . :
JMFS068H05+ AGGAGAAAGAGAGAGACAGGTAATGGTCTTTGCCTGGTTGAA
JMSF048K08+ AGGAGAAAGAGAGAGACAGGTAATGGTCTTTGCCTGGTTGAAGCCGACAGTATTTTCATC
                      ____________________________________________________________
consensus AGGAGAAAGAGAGAGACAGGTAATGGTCTTTGCCTGGTTGAAGCCGACAGTATTTTCATC