Contig 003884:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN006B22+                         AATTGTAAAAGGCTTATAGAGTTAAATAAATGTATGAATTTGGTAG
rJMFF001A07-                                    CTTATAGAGTTAAATAAATGTATGAATTTGGTAG
                      ____________________________________________________________
consensus                           AATTGTAAAAGGCTTATAGAGTTAAATAAATGTATGAATTTGGTAG
 
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JMFN006B22+           CAGCAGCAGGAAAACAAAACTATCAAGAACAAATACAATCCAGAACTGAAGAGAAGGAGA
rJMFF001A07-          CAGCAGCAGGAAAACAAAACTATCAAGAACAAATACAATCCAGAACTGAAGAGAAGGAGA
rJMSF048B22-                          AAACTATCAAGAACAAATACAATCCAGAACTGAAGAGAAGGAGA
                      ____________________________________________________________
consensus             CAGCAGCAGGAAAACAAAACTATCAAGAACAAATACAATCCAGAACTGAAGAGAAGGAGA
 
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JMFN006B22+           TACTATGTGTGTGGGAAATAAATATTCACTGGTGAGCATGAAAGCCATTAGCTGCCACCC
rJMFF001A07-          TACTATGTGTGTGGGAAATAAATATTCACTGGTGAGCATGAAAGCCATTAGCTGCCACCC
rJMSF048B22-          TACTATGTGTGTGGGAAATAAATATTCACTGGTGAGCATGAAAGCCATTAGCTGCCACCC
                      ____________________________________________________________
consensus             TACTATGTGTGTGGGAAATAAATATTCACTGGTGAGCATGAAAGCCATTAGCTGCCACCC
 
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JMFN006B22+           CTGGCATTCCCAAAGCATTATGATGATTCGCTCCTTCATCGTCATCGGACTCCAAAGAAA
rJMFF001A07-          CTGGCATTCCCAAAGCATTATGATGATTCGCTCCTTCATCGTCATCGGACTCCAAAGAAA
rJMSF048B22-          CTGGCATTCCCAAAGCATTATGATGATTCGCTCCTTCATCGTCATCGGACTCCAAAGAAA
                      ____________________________________________________________
consensus             CTGGCATTCCCAAAGCATTATGATGATTCGCTCCTTCATCGTCATCGGACTCCAAAGAAA
 
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JMFN006B22+           AAGCAGAGCAAGCACCCATTTCCATCTGCTGCACCTCTGCTCCAATCGGTCTATACTTGC
rJMFF001A07-          AAGCAGAGCAAGCACCCATTTCCATCTGCTGCACCTCTGCTCCAATCGGTCTATACTTGC
rJMSF048B22-          AAGCAGAGCAAGCACCCATTTCCATCTGCTGCACCTCTGCTCCAATCGGTCTATACTTGC
                      ____________________________________________________________
consensus             AAGCAGAGCAAGCACCCATTTCCATCTGCTGCACCTCTGCTCCAATCGGTCTATACTTGC
 
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JMFN006B22+           TACTTTCCTGCCTAATCCCATTCTTCTTACAAACTATACAGAAAACTACAGAAACAATGG
rJMFF001A07-          TACTTTCCTGCCTAATCCCATTCTTCTTACAAACTATACAGAAAACTACAGAAACAATGG
rJMSF048B22-          TACTTTCCTGCCTAATCCCATTCTTCTTACAAACTATACAGAAAACTACAGAAACAATGG
                      ____________________________________________________________
consensus             TACTTTCCTGCCTAATCCCATTCTTCTTACAAACTATACAGAAAACTACAGAAACAATGG
 
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JMFN006B22+           TGACAAGCAGAACAAGATGGCAATTGAACTGAAGCGTGGCAATGGCTCGACCTCGGTGGT
rJMFF001A07-          TGACAAGCAGAACAAGATGGCAATTGAACTGAAGCGTGGCAATGGCTCGACCTCGGTGGT
rJMSF048B22-          TGACAAGCAGAACAAGATGGCAATTGAACTGAAGCGTGGCAATGGCTCGACCTCGGTGGT
                      ____________________________________________________________
consensus             TGACAAGCAGAACAAGATGGCAATTGAACTGAAGCGTGGCAATGGCTCGACCTCGGTGGT
 
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JMFN006B22+           ATTCATGTTGCCCCTTGCACTTCACCGTGTAATTACCTCTACTTCTCTCGTGCAATGCGC
rJMFF001A07-          ATTCATGTTGCCCCTTGCACTTCACCGTGTAATTACCTCTACTTCTCTCGTGCAATGCGC
rJMSF048B22-          ATTCATGTTGCCCCTTGCACTTCACCGTGTAATTACCTCTACTTCTCTCGTGCAATGCGC
                      ____________________________________________________________
consensus             ATTCATGTTGCCCCTTGCACTTCACCGTGTAATTACCTCTACTTCTCTCGTGCAATGCGC
 
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JMFN006B22+           AGCCATGAGCCATCAGGCCTGAGAAAAATGAGAACCCCATTTGCAGAATCCACATTCCTT
rJMFF001A07-          AGCCATGAGCCATCAGGCCTGAGAAAAATGAGAACCCCATTTGCAGAATCCACATTCCTT
rJMSF048B22-          AGCCATGAGCCATCAGGCCTGAGAAAAATGAGAACCCCATTTGCAGAATCCACATTCCTT
                      ____________________________________________________________
consensus             AGCCATGAGCCATCAGGCCTGAGAAAAATGAGAACCCCATTTGCAGAATCCACATTCCTT
 
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JMFN006B22+           GTAAGACCAGCCCGATCCCTC                                       
rJMFF001A07-          GTAAGACCAGCCCGATCCCTCGCCCCAGTCTACAGTAATTCCTTTGGGGATTTTTCAATT
rJMSF048B22-          GTAAGACCAGCCCGATCCCTCGCCCCAGTCTACAGTAATTCCTTTGGGGATTTTTCAATT
JMSF048B22+                                     AGTCTACAGTNATTCCTTTGGGGATTTTTCAATT
                      ____________________________________________________________
consensus             GTAAGACCAGCCCGATCCCTCGCCCCAGTCTACAGTAATTCCTTTGGGGATTTTTCAATT
 
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rJMFF001A07-          CGAGAATCGTACAGAATGCACAGGCAGCAATTGGCAC                       
rJMSF048B22-          CGAGAATCGTACAGAATGCACAGGCAGCAATTGGCACTAGGAAGAGATCATAGTAACGAT
JMSF048B22+           CGAGAATCGTACAGAATGCACAGGCAGCAATTGGCACTAGGAAGAGATCATAGTAACGAT
                      ____________________________________________________________
consensus             CGAGAATCGTACAGAATGCACAGGCAGCAATTGGCACTAGGAAGAGATCATAGTAACGAT
 
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rJMSF048B22-          TTTCAACCCCGCTGGGGTCTTTCCTCTGAATGTAAAATATTAAAAATTCCTCCCCGAATG
JMSF048B22+           TTTCAACCCCGCTGGGGTCTTTCCTCTGAATGTAAAATATTAAAAATTCCTCCCCGAATG
                      ____________________________________________________________
consensus             TTTCAACCCCGCTGGGGTCTTTCCTCTGAATGTAAAATATTAAAAATTCCTCCCCGAATG
 
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rJMSF048B22-          CAAAGAGGGAAATCAAATTGGGGATTTGACAAGGCAATTGAAGAGAATCTTTTGA     
JMFF001A07+                                                               TGAACGGC
JMSF048B22+           CAAAGAGGGAAATCAAATTGGGGATTTGACAAGGCAATTGAAGAGAATCTTTTGAACGGC
                      ____________________________________________________________
consensus             CAAAGAGGGAAATCAAATTGGGGATTTGACAAGGCAATTGAAGAGAATCTTTTGAACGGC
 
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JMFF001A07+           TAAAGAAGCCGACCACAGAGTAGAGGATGAAAAGGAGCGAAATCGAGATTACCTCCAACT
JMSF048B22+           TAAAGAAGCCGACCACAGAGTAGAGGATGAAAAGGAGCGAAATCGAGATTACCTCCAACT
                      ____________________________________________________________
consensus             TAAAGAAGCCGACCACAGAGTAGAGGATGAAAAGGAGCGAAATCGAGATTACCTCCAACT
 
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JMFF001A07+           GGATAACCACGCCGACATCATCTTCGGAGCTGATGGCATCGGAGATTGAGATTAGTGAGT
JMSF048B22+           GGATAACCACGCCGACATCATCTTCGGAGCTGATGGCATCGGAGATTGAGATTAGTGAGT
                      ____________________________________________________________
consensus             GGATAACCACGCCGACATCATCTTCGGAGCTGATGGCATCGGAGATTGAGATTAGTGAGT
 
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JMFF001A07+           TGACAATGAAGAGAAACGAGAGAACAGAACCTGCTAGGAATGTTGCGGAGGAGGAAATCC
JMSF048B22+           TGACAATGAAGAGAAACGAGAGAACAGAACCTGCTAGGAATGTTGCGGAGGAGGAAATCC
                      ____________________________________________________________
consensus             TGACAATGAAGAGAAACGAGAGAACAGAACCTGCTAGGAATGTTGCGGAGGAGGAAATCC
 
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JMFF001A07+           GTGTGGATTTGGGGGT-GTTATGTCCGCTAATTGAGGCTGTTCCAGCGGTGACGGTGGCG
JMSF048B22+           GTGTGGATTTGGGGGTGGTTATGTCCGCTAATTGAGGCTGTTCCAGCGGTGACGGTGGCG
                      ____________________________________________________________
consensus             GTGTGGATTTGGGGGTGGTTATGTCCGCTAATTGAGGCTGTTCCAGCGGTGACGGTGGCG
 
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JMFF001A07+           GTGGCGTCACCTTCAAGGTTTCTTTGGACGATGCGAAAGCTTCCCAAGCGCCGATCATTA
JMSF048B22+           GTGGCGTCACCTTCAAGGTTTCTTTGGACGATGCGAAAGCTTCCCAAGCGCCGATCATTA
                      ____________________________________________________________
consensus             GTGGCGTCACCTTCAAGGTTTCTTTGGACGATGCGAAAGCTTCCCAAGCGCCGATCATTA
 
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JMFF001A07+           TGAATCCACCGCCGGCGACGGTGTACGAGAAGAGGCCCATCGTTGACTCCGATCAACACG
JMSF048B22+           TGAATCCACCGCCGGCGACGGTGTACGAGAAGAGGCCCATCGTTGACTCCGATCAACACG
                      ____________________________________________________________
consensus             TGAATCCACCGCCGGCGACGGTGTACGAGAAGAGGCCCATCGTTGACTCCGATCAACACG
 
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JMFF001A07+           ATAGTGAGCTTGCCGGTATCGGTATTTCAATATTGTTTATGCTAGAGCTAGTGATCGAAA
JMSF048B22+           ATAGTGAGCTTGCCGGTATCGGTATTTCAATATTGTTTATGCTAGAGCTAGTGATCGAAA
                      ____________________________________________________________
consensus             ATAGTGAGCTTGCCGGTATCGGTATTTCAATATTGTTTATGCTAGAGCTAGTGATCGAAA
 
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JMFF001A07+           GCGGATGGAAGAAT                                              
JMSF048B22+           GCGGATGGAAGAATGGATCGGCAGGCAGCAGTTCTGTTGGGGATTGAACCCTCTTGTCTC
                      ____________________________________________________________
consensus             GCGGATGGAAGAATGGATCGGCAGGCAGCAGTTCTGTTGGGGATTGAACCCTCTTGTCTC