clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF011N01 | Sequence | 577 | 003876 (6) | ref|XP_004134646.1| | 108 | PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] gb|KGN49417.1| | 533 | 003876 (6) | ref|XP_004134646.1| | 108 | PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] gb|KGN49417.1| |
JMSF047B10 | Sequence | 653 | 003876 (6) | ref|XP_004134646.1| | 108 | PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] gb|KGN49417.1| | 601 | 003876 (6) | ref|XP_004134646.1| | 108 | PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] gb|KGN49417.1| |
JMSF049A09 | Sequence | 336 | 003876 (6) | ref|XP_008439608.1| | 85.1 | PREDICTED: uncharacterized protein LOC103484351 [Cucumis melo] | 481 | 003876 (6) | ref|XP_004134646.1| | 103 | PREDICTED: uncharacterized protein LOC101211064 [Cucumis sativus] gb|KGN49417.1| |
This contig is upended
. : . : . : . : . : . :
JMFF011N01- GGGGGTCTTCGCGGATCACGATGACCCAACTCCATAATCACATCTCTCC
rJMSF047B10+ GAGAGGGGGTCTTCGCGGATCACGATGACCCAACTCCATAATCACATCTCTCC
rJMFF011N01+ GGGGGTCTTCGCGGATCACGATGACCCAACTCCATAATCACATCTCTCC
rJMSF049A09+ GAGAGGGGGTCTTCGCGGATCACGATGACCCAACTCCATAATCACATCTCTCC
JMSF049A09- GAGAGGGGGTCTTCGCGGATCACGATGACCCAACTCCATAATCACATCTCTCC
JMSF047B10- GAGAGGGGGTCTTCGCGGATCACGATGACCCAACTCCATAATCACATCTCTCC
____________________________________________________________
consensus GAGAGGGGGTCTTCGCGGATCACGATGACCCAACTCCATAATCACATCTCTCC
. : . : . : . : . : . :
JMFF011N01- TCCTCAGCCGCCGCCGTCGTCCACCGATGATTCTCGTCCTCCGCCACCGTCAACCTCCGA
rJMSF047B10+ TCCTCAGCCGCCGCCGTCGTCCACCGATGATTCTCGTCCTCCGCCACCGTCAACCTCCGA
rJMFF011N01+ TCCTCAGCCGCCGCCGTCGTCCACCGATGATTCTCGTCCTCCGCCACCGTCAACCTCCGA
rJMSF049A09+ TCCTCAGCCGCCGCCGTCGTCCACCGATGATTNTCGTCCTCCGCCACCGTCAACCTCCGA
JMSF049A09- TCCTCAGCCGCCGCCGTCGTCCACCGATGATTCTCGTCCTCCGCCACCGTCAACCTCCGA
JMSF047B10- TCCTCAGCCGCCGCCGTCGTCCACCGATGATTCTCGTCCTCCGCCACCGTCAACCTCCGA
____________________________________________________________
consensus TCCTCAGCCGCCGCCGTCGTCCACCGATGATTCTCGTCCTCCGCCACCGTCAACCTCCGA
. : . : . : . : . : . :
JMFF011N01- TGAGCCCAGTGCTGAGCCTCCCAGAGACGCACCTCCTCCTCCTCGATTCGACCCTAGCCG
rJMSF047B10+ TGAGCCCAGTGCTGAGCCTCCCAGAGACGCACCTCCTCCTCCTCGATTCGACCCTAGCCG
rJMFF011N01+ TGAGCCCAGTGCTGAGCCTCCCAGAGACGCACCTCCTCCTCCTCGATTCGACCCTAGCCG
rJMSF049A09+ TGAGCCCAGTGNTGAGCCTCCCAGAGACGCACCTCCTCCTCCTCGATTCGACCCTAGCCG
JMSF049A09- TGAGCCCAGTGCTGAGCCTCCCAGAGACGCNCCTCCTCCTCCTCGATTCGACCCTAGCCG
JMSF047B10- TGAGCCCAGTGCTGAGCCTCCCAGAGACGCACCTCCTCCTCCTCGATTCGACCCTAGCCG
____________________________________________________________
consensus TGAGCCCAGTGCTGAGCCTCCCAGAGACGCACCTCCTCCTCCTCGATTCGACCCTAGCCG
. : . : . : . : . : . :
JMFF011N01- AATGATTGGTATTATTAGAAGGAAGGCATTGATAAAAGATTTGGCAGCCGTATACCATGC
rJMSF047B10+ AATGATTGGTATTATTAGAAGGAAGGCATTGATAAAAGATTTGGCAGCCGTATACCATGC
rJMFF011N01+ AATGATTGGTATTATTAGAAGGAAGGCATTGATAAAAGATTTGGCAGCCGTATACCATGC
rJMSF049A09+ AATGATTGGTATTATTAGAAGGAAGGCATTGATAAAAGATTTGGCAGCCGTATACCATGC
JMSF049A09- AATGATTGGNATTATTAGAAGGAAGGCATTGATAAAAGATTTGGCAGCCGTATACCATGN
JMSF047B10- AATGATTGGTATTATTAGAAGGAAGGCATTGATAAAAGATTTGGCAGCCGTATACCATGC
____________________________________________________________
consensus AATGATTGGTATTATTAGAAGGAAGGCATTGATAAAAGATTTGGCAGCCGTATACCATGC
. : . : . : . : . : . :
JMFF011N01- AGAGTGCCTTACATATTGTCAACAACTTTTGGAACTCCAAAGAAAATTTGAAGAGCCACA
rJMSF047B10+ AGAGTGCCTTACATATTGTCAACAACTTTTGGAACTCCAAAGAAAATTTGAAGAGCCACA
rJMFF011N01+ AGAGTGCCTTACATATTGTCAACAACTTTTGGAACTCCAAAGAAAATTTGAAGAGCCACA
rJMSF049A09+ AGAGTGCCTTACATATNGTCAACAACTTTTGGAACTCCAAAGAAAATTTGAAGAGCCACA
JMSF049A09- NNAGTGCCTTACATATTGNCAACNACTTTTGGAACTCCAAAGAAAATTTGAAGAGCCACA
JMSF047B10- AGAGTGCCTTACATATTGTCAACAACTTTTGGAACTCCAAAGAAAATTTGAAGAGCCACA
____________________________________________________________
consensus AGAGTGCCTTACATATTGTCAACAACTTTTGGAACTCCAAAGAAAATTTGAAGAGCCACA
. : . : . : . : . : . :
JMFF011N01- TATAGAGATTAAGGCTCCAGAAGACACAAGGAAAGAGATGGCAAGGCCCACAAAGCGCAT
rJMSF047B10+ TATAGAGATTAAGGCTCCAGAAGACACAAGGAAAGAGATGGCAAGGCCCACAAAGCGCAT
rJMFF011N01+ TATAGAGATTAAGGCTCCAGAAGACACAAGGAAAGAGATGGCAAGGCCCACAAAGCGCAT
rJMSF049A09+ TATAGAGATTAAGGCTCCAGAAGACACAAGGAAAGAGATGGCAAGGCCCACAAAGCGCAT
JMSF049A09- TATANAGATTAAGGCTCCAGAAGACACTAGGAAAGAGATGG
JMSF047B10- TATAGAGATTAAGGCTCCAGAAGACACAAGGAAAGAGATGGCAAGGCCCACAAAGCGCAT
____________________________________________________________
consensus TATAGAGATTAAGGCTCCAGAAGACACAAGGAAAGAGATGGCAAGGCCCACAAAGCGCAT
. : . : . : . : . : . :
JMFF011N01- GAAGAAAACTCGTTAGGTGTTAAACTTCAAGTGTTTGGCAGCTTGATTCATTCCTTTTTA
rJMSF047B10+ GAAGAAAACTCGTTAGGTGTTAAACTTCAAGTGTTTGGCAGCTTGATTCATTCCTTTTTA
rJMFF011N01+ GAAGAAAACTCGTTAGGTGTTAAACTTCAAGTGTTTGGCAGCTTGATTCATTCCTTTTTA
rJMSF049A09+ GAAGAAAACTCGTTAGGTGTTAAACTTCAAGTGTTTGGCAGCTTGATTCATTCCTTTTTA
JMSF047B10- GAAGAAAACTCGTTAGGTGTTAAACTTCAAGTGTTTGGCAGCTTGATTCATTCCTTTTTA
____________________________________________________________
consensus GAAGAAAACTCGTTAGGTGTTAAACTTCAAGTGTTTGGCAGCTTGATTCATTCCTTTTTA
. : . : . : . : . : . :
JMFF011N01- AGATTCACTTCTCTACCCATCTTATCAGCAAGAAATCAAAGCTTATTTGGTATTGTAGAG
rJMSF047B10+ AGATTCACTTCTCTACCCATCTTATCAGCAAGAAATCAAAGCTTATTTGGTATTGTAGAG
rJMFF011N01+ AGATTCACTTCTCTACCCATCTTATCAGCAAGAAATCAAAGCTTATTTGGTATTGTAGAG
rJMSF049A09+ AGATTCACTTCTCTACCCATCTTATCAGCAAGAAATCAAAGCTTATTTGGTATTGTTGAG
JMSF047B10- AGATTCACTTCTCTACCCATCTTATCAGCAAGAAATCAAAGCTTATTTGGTATTGTAGAG
____________________________________________________________
consensus AGATTCACTTCTCTACCCATCTTATCAGCAAGAAATCAAAGCTTATTTGGTATTGTAGAG
. : . : . : . : . : . :
JMFF011N01- TTGCCAAAACCAATTGACTGATAAATGAGTAGTTCTAAAACTATAGTCTCCAGAAGTATA
rJMSF047B10+ TTGCCAAAACCAATTGACTGATAAATGAGTAGTTCTAAAACTATAGTCTCCAGAAGTATA
rJMFF011N01+ TTGCCAAAACCAATTGACTGATAAATGAGTAGTTCTAAAACTATAGTCTCCAGAAGTATA
rJMSF049A09+ TTGCCA
JMSF047B10- TTGCCAAAACCAATTGACTGATAAATGAGTAGTTCTAAAACTATAGTCTCCAGAAGTATA
____________________________________________________________
consensus TTGCCAAAACCAATTGACTGATAAATGAGTAGTTCTAAAACTATAGTCTCCAGAAGTATA
. : . : . : . : . : . :
JMFF011N01- CTTTTCATTAGCTTCAAAGAAGTAGTTTTTTCTTGTGGAAA
rJMSF047B10+ CTTTTCATTAGCTTCAAAGAAGTAGTTTTTTCTTGTGGAAATATGCATCTGTTATTTGTA
rJMFF011N01+ CTTT
JMSF047B10- CTTTTCATTAGCTTCAAAGAAGTAGTTTTTTCTTGTGGAAATATGCATCTGTTATTTGTA
____________________________________________________________
consensus CTTTTCATTAGCTTCAAAGAAGTAGTTTTTTCTTGTGGAAATATGCATCTGTTATTTGTA
. : . : . : . : . : . :
rJMSF047B10+ CAGACCTT
JMSF047B10- CAGACCTTTTCTAGATAAAATTCTTCAACAATCTATGATTCTTCTCTAACAAAAAAAAAA
____________________________________________________________
consensus CAGACCTTTTCTAGATAAAATTCTTCAACAATCTATGATTCTTCTCTAACAAAAAAAAAA