Contig 003871:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF046J23Sequence728003871 (2)ref|XP_011099803.1|3e-43PREDICTED: trihelix transcription factor GT-2-like [Sesamum indicum]720012774 (2)ref|XP_004249868.1|2e-52PREDICTED: trihelix transcription factor GT-2-like [Solanum lycopersicum]
JMSF049P17Sequence630003871 (2)ref|XP_011099803.1|1e-43PREDICTED: trihelix transcription factor GT-2-like [Sesamum indicum]802012774 (2)ref|XP_009766495.1|5e-54PREDICTED: trihelix transcription factor GT-2-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF049P17+                                TTCTTAGCAATCCCTTCTGACGAAGAAGAGGTGGCGGAT
JMSF046J23+                                                               TGGCGGAT
                      ____________________________________________________________
consensus                                  TTCTTAGCAATCCCTTCTGACGAAGAAGAGGTGGCGGAT
 
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JMSF049P17+           GTGGAGGTGGAATTGATGTCCAAACTGAAGTCTCCTGGAGTATGGCAAGGCTGCTGTATT
JMSF046J23+           GTGGAGGTGGAATTGATGTCCAAACTGAAGTCTCCTGGAGTATGGCAAGGCTGCTGTATT
                      ____________________________________________________________
consensus             GTGGAGGTGGAATTGATGTCCAAACTGAAGTCTCCTGGAGTATGGCAAGGCTGCTGTATT
 
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JMSF049P17+           CTGAGATGATCTTGGGTTAAGCTTGTGGTGGGTTTTAACATTGTGAGGGGTGTTGCAGGA
JMSF046J23+           CTGAGATGATCTTGGGTTAAGCTTGTGGTGGGTTTTAACATTGTGAGGGGTGTTGCAGGA
                      ____________________________________________________________
consensus             CTGAGATGATCTTGGGTTAAGCTTGTGGTGGGTTTTAACATTGTGAGGGGTGTTGCAGGA
 
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JMSF049P17+           GATACCAAGGTTGGTTTTTCCAGGGTATTTTGGTTTTGGATTTGGATTTGATGGGAGGTT
JMSF046J23+           GATACCAAGGTTGGTTTTTCCAGGGTATTTTGGTTTTGGATTTGGATTTGATGGGAGGTT
                      ____________________________________________________________
consensus             GATACCAAGGTTGGTTTTTCCAGGGTATTTTGGTTTTGGATTTGGATTTGATGGGAGGTT
 
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JMSF049P17+           AAAGAGTGGTGGGTGTCAAAAAGCTCCAAGTGCTGGAAGAATCTGTAATTTTTGGCATTT
JMSF046J23+           AAAGAGTGGTGGGTGTCAAAAAGCTCCAAGTGCTGGAAGAATCTGTAATTTTTGGCATTT
                      ____________________________________________________________
consensus             AAAGAGTGGTGGGTGTCAAAAAGCTCCAAGTGCTGGAAGAATCTGTAATTTTTGGCATTT
 
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JMSF049P17+           TGTCGTCTACCACTACCAGATCGGCCTTCCTTTGTTCTCTTGTGATACTTGTAGATGTTG
JMSF046J23+           TGTCGTCTACCACTACCAGATCGGCCTTCCTTTGTTCTCTTGTGATACTTGTAGATGTTG
                      ____________________________________________________________
consensus             TGTCGTCTACCACTACCAGATCGGCCTTCCTTTGTTCTCTTGTGATACTTGTAGATGTTG
 
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JMSF049P17+           TCGAATTTCTCTTTGCACTTCTTAGCATTTCGATGATATCCAAGTTCCCCCATTTTCCTG
JMSF046J23+           TCGAATTTCTCTTTGCACTTCTTAGCATTTCGATGATATCCAAGTTCCCCCATTTTCCTG
                      ____________________________________________________________
consensus             TCGAATTTCTCTTTGCACTTCTTAGCATTTCGATGATATCCAAGTTCCCCCATTTTCCTG
 
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JMSF049P17+           GAGACTTCATCCCATAGAGGAGCTTTGTGAGAGGAGGAGTCACGAAATGCAAGGTCCATT
JMSF046J23+           GAGACTTCATCCCATAGAGGAGCTTTGTGAGAGGAGGAGTCACGAAATGCAAGGTCCATT
                      ____________________________________________________________
consensus             GAGACTTCATCCCATAGAGGAGCTTTGTGAGAGGAGGAGTCACGAAATGCAAGGTCCATT
 
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JMSF049P17+           TGAGACCTTATGTTGAGCAAAGCCAGTGTTTCTTCACGGGGCCACCTGTTCCCACCTGAA
JMSF046J23+           TGAGACCTTATGTTGAGCAAAGCCAGTGTTTCTTCACGGGGCCACCTGTTCCCACCTGAA
                      ____________________________________________________________
consensus             TGAGACCTTATGTTGAGCAAAGCCAGTGTTTCTTCACGGGGCCACCTGTTCCCACCTGAA
 
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JMSF049P17+           TTCCACTCACCGTCTTCTCCTCCGCCTTCATTGTTCTTCTTCAGCTCCGCAGCTCCTCCT
JMSF046J23+           TTCCACTCACCGTCTTCTCCTCCGCCTTCATTGTTCTTCTTCAGCTCCGCAGCTCCTCCT
                      ____________________________________________________________
consensus             TTCCACTCACCGTCTTCTCCTCCGCCTTCATTGTTCTTCTTCAGCTCCGCAGCTCCTCCT
 
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JMSF049P17+           CCTCCTCCATCATCGCTTGAATTTTGCAACAACACTGGAGTTTCCAGCA           
JMSF046J23+           CCTCCTCCATCATCGCTTGAATTTTGCAACAACACTGGAGTTACCAGCATATCTACTACT
                      ____________________________________________________________
consensus             CCTCCTCCATCATCGCTTGAATTTTGCAACAACACTGGAGTTTCCAGCATATCTACTACT
 
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JMSF046J23+           GGAACTGGGAGGGGTTATTAAAGCTGCTGAGATTTTTGTTTTACCTTTGTTGTGGAGGTG
                      ____________________________________________________________
consensus             GGAACTGGGAGGGGTTATTAAAGCTGCTGAGATTTTTGTTTTACCTTTGTTGTGGAGGTG
 
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JMSF046J23+           AAATTTATTGGATGGGTAATTATAAAGTTTAATCGTCTGGACCAAAACGTGTAACCAACC
                      ____________________________________________________________
consensus             AAATTTATTGGATGGGTAATTATAAAGTTTAATCGTCTGGACCAAAACGTGTAACCAACC