Contig 003867:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF045L13-                                                      CATTTTTTCACCAAGA
                      ____________________________________________________________
consensus                                                         CATTTTTTCACCAAGA
 
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rJMSF045L13-          GAGACATAAATGACTGACTAACTGATATACAGACGATAAATGTGGTAATAATACTAAATA
                      ____________________________________________________________
consensus             GAGACATAAATGACTGACTAACTGATATACAGACGATAAATGTGGTAATAATACTAAATA
 
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rJMSF045L13-          GGGTGTCAGAAATTCAATCTCCAAAGGCAAATTCACCTTAATTCCAAATTAGAGCAAGGA
                      ____________________________________________________________
consensus             GGGTGTCAGAAATTCAATCTCCAAAGGCAAATTCACCTTAATTCCAAATTAGAGCAAGGA
 
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rJMSF045L13-          GCACAAAGAAACCGATTACCAAACACAGCACCTTCAGGGCAGTATCAGCCTGCTGTTGCT
JMSF045L13+                                                                      T
                      ____________________________________________________________
consensus             GCACAAAGAAACCGATTACCAAACACAGCACCTTCAGGGCAGTATCAGCCTGCTGTTGCT
 
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rJMSF045L13-          GAATTGAGCGGTGAGAGAATCTATGAGAGTGGACACCATGAGCGTGAACACCGTGAAATG
JMSF045L13+           GAATTGAGCGGTGAGAGAATTTATGAGAGTGGACACCATGAGCGTGAACACCGTGAAATG
                      ____________________________________________________________
consensus             GAATTGAGCGGTGAGAGAATTTATGAGAGTGGACACCATGAGCGTGAACACCGTGAAATG
 
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rJMSF045L13-          GATTTGGATATCCGTATGGATGACCAGAAGCTGCTCCATACATGGTGGCATCGGGGAAAC
JMSF045L13+           GATTTGGATATCCGTATGGATGACCAGAAGCTGCTCCATACATGGTGGCATCGGGGAAAC
                      ____________________________________________________________
consensus             GATTTGGATATCCGTATGGATGACCAGAAGCTGCTCCATACATGGTGGCATCGGGGAAAC
 
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rJMSF045L13-          CATTCACTTGAATGTTGAAAGACGGCATTAGACCCCCAAATGCAGCGGAGAGTGCAAAGT
JMSF045L13+           CATTCACTTGAATGTTGAAAGACGGCATTAGACCCCCAAATGCAGCGGAGAGTGCAAAGT
                      ____________________________________________________________
consensus             CATTCACTTGAATGTTGAAAGACGGCATTAGACCCCCAAATGCAGCGGAGAGTGCAAAGT
 
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rJMSF045L13-          TCCCGAACAACGATGGAATGAGACCACCAAAAGCAGCAGAGAGGGCAAAGTTCCCCATCC
JMSF045L13+           TCCCGAACAACGATGGAATGAGACCACCAAAAGCAGCAGAGAGGGCAAAGTTCCCCATCC
                      ____________________________________________________________
consensus             TCCCGAACAACGATGGAATGAGACCACCAAAAGCAGCAGAGAGGGCAAAGTTCCCCATCC
 
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JMFN029C11+                                                  CAAATCCAAAATCATGCTGTG
rJMSF045L13-          TTGCAACTCCAGCCGGGGCAAACCCCCCTAACCCATTCGCAAATCCAAAATCATGCTGTG
JMSF045L13+           TTGCAACTCCAGCCGGGGCAAACCCCCCTAACCCATTCGCAAATCCAAAATCATGCTGTG
                      ____________________________________________________________
consensus             TTGCAACTCCAGCCGGGGCAAACCCCCCTAACCCATTCGCAAATCCAAAATCATGCTGTG
 
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JMFN029C11+           GAAACGCATTTGCCTGTGGCGGAGGAGCAGTTTCGGGCCTCTGCCCCGTAGGGCGATGCG
rJMSF045L13-          GAAACGCATTTGCCTGTGGCGGAGGAGCAGTTTCGGGCCTCTGCCCCGTAGGGCGATGCG
JMSF045L13+           GAAACGCATTTGCCTGTGGCGGAGGAGCAGTTTCGGGCCTCTGCCCCGTAGGGCGATGCG
                      ____________________________________________________________
consensus             GAAACGCATTTGCCTGTGGCGGAGGAGCAGTTTCGGGCCTCTGCCCCGTAGGGCGATGCG
 
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JMFN029C11+           GGATTTCCATGCCGGGAATCGACTTGGACCTAGG                          
rJMSF045L13-          GGATTTCCATCCCGGGAATCGACTTGGACCTAGGATCTGTCGAGTCCTTTCCTCGACCAT
JMSF045L13+           GGATTTCCATCCCGGGAATCGACTTGGACCTAGGATCTGTCGAGTCCTTTCCTCGACCAT
                      ____________________________________________________________
consensus             GGATTTCCATCCCGGGAATCGACTTGGACCTAGGATCTGTCGAGTCCTTTCCTCGACCAT
 
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rJMSF045L13-          ACAAAGGAACCAACTTCTCCTCCTCAACAAGAGCCTTGCATACAGGGCATTCACTAGAGC
JMSF045L13+           ACAAAGGAACCAACTTCTCCTCCTCAACAAGAGCCTTGCATACAGGGCATTCACTAGAGC
                      ____________________________________________________________
consensus             ACAAAGGAACCAACTTCTCCTCCTCAACAAGAGCCTTGCATACAGGGCATTCACTAGAGC
 
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rJMSF045L13-          GTGAGTGAATATGAAGCCATCTGTAAAGGCAAGGCCAGCAGAATAGGTGCCCACAGAGTG
JMSF045L13+           GTGAGTGAATATGAAGCCATCTGTAAAGGCAAGGCCAGCAGAATAGGTGCCCACAGAGTG
                      ____________________________________________________________
consensus             GTGAGTGAATATGAAGCCATCTGTAAAGGCAAGGCCAGCAGAATAGGTGCCCACAGAGTG
 
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rJMSF045L13-          TAACAATAGGGTCTTGTGCTAAGTCAAAGCAAATATTGCACTCAAAATCCCCAGTATCAC
JMSF045L13+           TAACAATAGGGTCTTGTGCTAAGTCAAAGCAAATATTGCACTCAAAATCCCCAGTATCAC
                      ____________________________________________________________
consensus             TAACAATAGGGTCTTGTGCTAAGTCAAAGCAAATATTGCACTCAAAATCCCCAGTATCAC
 
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rJMSF045L13-          TTCCATTA                                                    
JMSF045L13+           TTCCATTAGAGGAAGAAGAGCTCTGGGGCACCCCCCTACTCGTCGCTTCTCCAATCCCAC
                      ____________________________________________________________
consensus             TTCCATTAGAGGAAGAAGAGCTCTGGGGCACCCCCCTACTCGTCGCTTCTCCAATCCCAC
 
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JMSF045L13+           TAGCCATAACCACACTAGAAAACGCGTCTTGTTGGATGCGATAGATTTATTGATCGAAAG
                      ____________________________________________________________
consensus             TAGCCATAACCACACTAGAAAACGCGTCTTGTTGGATGCGATAGATTTATTGATCGAAAG
 
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JMSF045L13+           AGCGAAAAACCCAATGGATGAACAGGCGAAAGGATTGATTGAGGCGATCGGAGGAAGAGA
                      ____________________________________________________________
consensus             AGCGAAAAACCCAATGGATGAACAGGCGAAAGGATTGATTGAGGCGATCGGAGGAAGAGA
 
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JMSF045L13+           GAATGGTTAGTACCAAAGGCAAGAAGGTTCGAGGAGATTAGTGATGATGATGTTTTCCCC
                      ____________________________________________________________
consensus             GAATGGTTAGTACCAAAGGCAAGAAGGTTCGAGGAGATTAGTGATGATGATGTTTTCCCC