Contig 003858:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011O12Sequence594003858 (3)ref|XP_009761283.1|128PREDICTED: uncharacterized protein LOC104213475 [Nicotiana sylvestris]733013651 (3)emb|CDO99871.1|3e-18unnamed protein product [Coffea canephora]
JMSF044D12Sequence713003858 (3)ref|XP_006345860.1|1e-33PREDICTED: micronuclear linker histone polyprotein-like isoform X2 [Solanum tub734013651 (3)emb|CDO99871.1|9e-11unnamed protein product [Coffea canephora]
JMSF044H20Sequence710003858 (3)ref|XP_006345860.1|6e-33PREDICTED: micronuclear linker histone polyprotein-like isoform X2 [Solanum tub634013651 (3)emb|CDO99871.1|1e-07unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044H20+ CCGCCGACAAGATTTACCAACGTGTTTGGATGAAGTACCAGTTGATGCAA
JMSF044D12+ TATCCGCCGACAAGATTTACCAACGTGTTTGGATGAAGTACCAGTTGATGCAA
                      ____________________________________________________________
consensus TATCCGCCGACAAGATTTACCAACGTGTTTGGATGAAGTACCAGTTGATGCAA
 
. : . : . : . : . : . :
JMSF044H20+ AACTACTAGATCTTCTGGAAGAATCTATGTATTTCTTCCTGTTCGAAGAATGCAGAGATT
JMFF011O12+ TTCGAAGAATGCAGAGATT
JMSF044D12+ AACTACTAGATCTTCTGGAAGAATCTATGTATTTCTTCCTGTTCGAAGAATGCAGAGATT
                      ____________________________________________________________
consensus AACTACTAGATCTTCTGGAAGAATCTATGTATTTCTTCCTGTTCGAAGAATGCAGAGATT
 
. : . : . : . : . : . :
JMSF044H20+ CTCTATCACTTTTCCACGACAAGCTTCTACCAGAAGATGGAGAAGAGTCAATCTCAGAGC
JMFF011O12+ CTCTATCACTTTTCCACGACAAGCTTCTACCAGAAGATGGAGAAGAGTCAATCTCAGAGC
JMSF044D12+ CTCTATCACTTTTCCACGACAAGCTTCTACCAGAAGATGGAGAAGAGTCAATCTCAGAGC
                      ____________________________________________________________
consensus CTCTATCACTTTTCCACGACAAGCTTCTACCAGAAGATGGAGAAGAGTCAATCTCAGAGC
 
. : . : . : . : . : . :
JMSF044H20+ TTGAGTAGGTTTCTCCACCATTATCCCTCGCTTCCTTGGGCTCATCTTTACTATCAGAAA
JMFF011O12+ TTGAGTAGGTTTCTCCACCATTATCCCTCGCTTCCTTGGGCTCATCTTTACTATCAGAAA
JMSF044D12+ TTGAGTAGGTTTCTCCACCATTATCCCTCGCTTCCTTGGGCTCATCTTTACTATCAGAAA
                      ____________________________________________________________
consensus TTGAGTAGGTTTCTCCACCATTATCCCTCGCTTCCTTGGGCTCATCTTTACTATCAGAAA
 
. : . : . : . : . : . :
JMSF044H20+ CATTAGATTCACACATCACAGCATCCTCGTCAGAGCCTGAGTCAAAACCATCTGAAGCAT
JMFF011O12+ CATTAGATTCACACATCACAGCATCCTCGTCAGAGCCTGAGTCAAAACCATCTGAAGCAT
JMSF044D12+ CATTAGATTCACACATCACAGCATCCTCGTCAGAGCCTGAGTCAAAACCATCTGAAGCAT
                      ____________________________________________________________
consensus CATTAGATTCACACATCACAGCATCCTCGTCAGAGCCTGAGTCAAAACCATCTGAAGCAT
 
. : . : . : . : . : . :
JMSF044H20+ CACCGATACCATGGTTCTCTAAAATGGCTAGCACAGCTGCAGTGGCTTTCTCGGCTTTCT
JMFF011O12+ CACCGATACCATGGTTCTCTAAAATGGCTAGCACAGCTGCAGTGGCTTTCTCGGCTTTCT
JMSF044D12+ CACCGATACCATGGTTCTCTAAAATGGCTAGCACAGCTGCAGTGGCTTTCTCGGCTTTCT
                      ____________________________________________________________
consensus CACCGATACCATGGTTCTCTAAAATGGCTAGCACAGCTGCAGTGGCTTTCTCGGCTTTCT
 
. : . : . : . : . : . :
JMSF044H20+ TTCTTTGAAGTGTGACAGTATTTAGCTGTTCCTCCAGTTCTGCAACCTTCTTGGTCAGTT
JMFF011O12+ TTCTTTGAAGTGTGACAGTATTTAGCTGTTCCTCCAGTTCTGCAACCTTCTTGGTCAGTT
JMSF044D12+ TTCTTTGAAGTGTGACAGTATTTAGCTGTTCCTCCAGTTCTGCAACCTTCTTGGTCAGTT
                      ____________________________________________________________
consensus TTCTTTGAAGTGTGACAGTATTTAGCTGTTCCTCCAGTTCTGCAACCTTCTTGGTCAGTT
 
. : . : . : . : . : . :
JMSF044H20+ CATCAGCTCTCTGCTTTGCTGTCCGGGAGACTGATCTTTCAGACAGTAATCGTGCCCGAA
JMFF011O12+ CATCAGCTCTCTGCTTTGCTGTCCGGGAGACTGATCTTTCAGACAGTAATCGTGCCCGAA
JMSF044D12+ CATCAGCTCTCTGCTTTGCTGTCCGGGAGACTGATCTTTCAGACAGTAATCGTGCCCGAA
                      ____________________________________________________________
consensus CATCAGCTCTCTGCTTTGCTGTCCGGGAGACTGATCTTTCAGACAGTAATCGTGCCCGAA
 
. : . : . : . : . : . :
JMSF044H20+ GAAATTCAATTCTCATTGAAGGTGAATCTTCCATGACTGGAGTATTCCTCTGATTCTGAT
JMFF011O12+ GAAATTCAATTCTCATTGAAGGTGAATCTTCCATGACTGGAGTATTCCTCTGATTCTGAT
JMSF044D12+ GAAATTCAATTCTCATTGAAGGTGAATCTTCCATGACTGGAGTATTCCTCTGATTCTGAT
                      ____________________________________________________________
consensus GAAATTCAATTCTCATTGAAGGTGAATCTTCCATGACTGGAGTATTCCTCTGATTCTGAT
 
. : . : . : . : . : . :
JMSF044H20+ CTTCATTCCCCGAAGTAGACATTCTTGAAATCAAAGCTTAACTCTCAGTTGAACGCTGAC
JMFF011O12+ CTTCATTCCCCGAAGTAGACATTCTTGAAATCAAAGCTTAACTCTCAGTTGAACGCTGAC
JMSF044D12+ CTTCATTCCCCGAAGTAGACATTCTTGAAATCAAAGCTTAACTCTCAGTTGAACGCTGAC
                      ____________________________________________________________
consensus CTTCATTCCCCGAAGTAGACATTCTTGAAATCAAAGCTTAACTCTCAGTTGAACGCTGAC
 
. : . : . : . : . : . :
JMSF044H20+ TTTAGTTGAAGCTCCTCCCCGAATGAAGTCTTCGATTTCATGGCTAGACTTTGGTCTGGA
JMFF011O12+ TTTAGTTGAAGCTCCTCCCCGAATGAAGTCTTCGATTTCATGGCTAGACTTTGGTCTGGA
JMSF044D12+ TTTAGTTGAAGCTCCTCCCCGAATGAAGTCTTCGATTTCATGGCTAGACTTTGGTCTGGA
                      ____________________________________________________________
consensus TTTAGTTGAAGCTCCTCCCCGAATGAAGTCTTCGATTTCATGGCTAGACTTTGGTCTGGA
 
. : . : . : . : . : . :
JMSF044H20+ AAACCCACTGTGTGGGTTGAGCGTCGAGACTAGACAGAGTCTGTGTGTTTGTGGAGGGCC
JMFF011O12+ AAACCCACTGTGTGGGTTGAGCGTCGAGACTAGA
JMSF044D12+ AAACCCACTGTGTGGGTTGAGCGTCGAGACTAGACAGAGTCTGTGTGTTTGTGGAGGGCC
                      ____________________________________________________________
consensus AAACCCACTGTGTGGGTTGAGCGTCGAGACTAGACAGAGTCTGTGTGTTTGTGGAGGGCC