Contig 003858:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011O12Sequence594003858 (3)ref|XP_009761283.1|128PREDICTED: uncharacterized protein LOC104213475 [Nicotiana sylvestris]733013651 (3)emb|CDO99871.1|3e-18unnamed protein product [Coffea canephora]
JMSF044D12Sequence713003858 (3)ref|XP_006345860.1|1e-33PREDICTED: micronuclear linker histone polyprotein-like isoform X2 [Solanum tub734013651 (3)emb|CDO99871.1|9e-11unnamed protein product [Coffea canephora]
JMSF044H20Sequence710003858 (3)ref|XP_006345860.1|6e-33PREDICTED: micronuclear linker histone polyprotein-like isoform X2 [Solanum tub634013651 (3)emb|CDO99871.1|1e-07unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF044H20+                     CCGCCGACAAGATTTACCAACGTGTTTGGATGAAGTACCAGTTGATGCAA
JMSF044D12+                  TATCCGCCGACAAGATTTACCAACGTGTTTGGATGAAGTACCAGTTGATGCAA
                      ____________________________________________________________
consensus                    TATCCGCCGACAAGATTTACCAACGTGTTTGGATGAAGTACCAGTTGATGCAA
 
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JMSF044H20+           AACTACTAGATCTTCTGGAAGAATCTATGTATTTCTTCCTGTTCGAAGAATGCAGAGATT
JMFF011O12+                                                    TTCGAAGAATGCAGAGATT
JMSF044D12+           AACTACTAGATCTTCTGGAAGAATCTATGTATTTCTTCCTGTTCGAAGAATGCAGAGATT
                      ____________________________________________________________
consensus             AACTACTAGATCTTCTGGAAGAATCTATGTATTTCTTCCTGTTCGAAGAATGCAGAGATT
 
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JMSF044H20+           CTCTATCACTTTTCCACGACAAGCTTCTACCAGAAGATGGAGAAGAGTCAATCTCAGAGC
JMFF011O12+           CTCTATCACTTTTCCACGACAAGCTTCTACCAGAAGATGGAGAAGAGTCAATCTCAGAGC
JMSF044D12+           CTCTATCACTTTTCCACGACAAGCTTCTACCAGAAGATGGAGAAGAGTCAATCTCAGAGC
                      ____________________________________________________________
consensus             CTCTATCACTTTTCCACGACAAGCTTCTACCAGAAGATGGAGAAGAGTCAATCTCAGAGC
 
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JMSF044H20+           TTGAGTAGGTTTCTCCACCATTATCCCTCGCTTCCTTGGGCTCATCTTTACTATCAGAAA
JMFF011O12+           TTGAGTAGGTTTCTCCACCATTATCCCTCGCTTCCTTGGGCTCATCTTTACTATCAGAAA
JMSF044D12+           TTGAGTAGGTTTCTCCACCATTATCCCTCGCTTCCTTGGGCTCATCTTTACTATCAGAAA
                      ____________________________________________________________
consensus             TTGAGTAGGTTTCTCCACCATTATCCCTCGCTTCCTTGGGCTCATCTTTACTATCAGAAA
 
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JMSF044H20+           CATTAGATTCACACATCACAGCATCCTCGTCAGAGCCTGAGTCAAAACCATCTGAAGCAT
JMFF011O12+           CATTAGATTCACACATCACAGCATCCTCGTCAGAGCCTGAGTCAAAACCATCTGAAGCAT
JMSF044D12+           CATTAGATTCACACATCACAGCATCCTCGTCAGAGCCTGAGTCAAAACCATCTGAAGCAT
                      ____________________________________________________________
consensus             CATTAGATTCACACATCACAGCATCCTCGTCAGAGCCTGAGTCAAAACCATCTGAAGCAT
 
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JMSF044H20+           CACCGATACCATGGTTCTCTAAAATGGCTAGCACAGCTGCAGTGGCTTTCTCGGCTTTCT
JMFF011O12+           CACCGATACCATGGTTCTCTAAAATGGCTAGCACAGCTGCAGTGGCTTTCTCGGCTTTCT
JMSF044D12+           CACCGATACCATGGTTCTCTAAAATGGCTAGCACAGCTGCAGTGGCTTTCTCGGCTTTCT
                      ____________________________________________________________
consensus             CACCGATACCATGGTTCTCTAAAATGGCTAGCACAGCTGCAGTGGCTTTCTCGGCTTTCT
 
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JMSF044H20+           TTCTTTGAAGTGTGACAGTATTTAGCTGTTCCTCCAGTTCTGCAACCTTCTTGGTCAGTT
JMFF011O12+           TTCTTTGAAGTGTGACAGTATTTAGCTGTTCCTCCAGTTCTGCAACCTTCTTGGTCAGTT
JMSF044D12+           TTCTTTGAAGTGTGACAGTATTTAGCTGTTCCTCCAGTTCTGCAACCTTCTTGGTCAGTT
                      ____________________________________________________________
consensus             TTCTTTGAAGTGTGACAGTATTTAGCTGTTCCTCCAGTTCTGCAACCTTCTTGGTCAGTT
 
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JMSF044H20+           CATCAGCTCTCTGCTTTGCTGTCCGGGAGACTGATCTTTCAGACAGTAATCGTGCCCGAA
JMFF011O12+           CATCAGCTCTCTGCTTTGCTGTCCGGGAGACTGATCTTTCAGACAGTAATCGTGCCCGAA
JMSF044D12+           CATCAGCTCTCTGCTTTGCTGTCCGGGAGACTGATCTTTCAGACAGTAATCGTGCCCGAA
                      ____________________________________________________________
consensus             CATCAGCTCTCTGCTTTGCTGTCCGGGAGACTGATCTTTCAGACAGTAATCGTGCCCGAA
 
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JMSF044H20+           GAAATTCAATTCTCATTGAAGGTGAATCTTCCATGACTGGAGTATTCCTCTGATTCTGAT
JMFF011O12+           GAAATTCAATTCTCATTGAAGGTGAATCTTCCATGACTGGAGTATTCCTCTGATTCTGAT
JMSF044D12+           GAAATTCAATTCTCATTGAAGGTGAATCTTCCATGACTGGAGTATTCCTCTGATTCTGAT
                      ____________________________________________________________
consensus             GAAATTCAATTCTCATTGAAGGTGAATCTTCCATGACTGGAGTATTCCTCTGATTCTGAT
 
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JMSF044H20+           CTTCATTCCCCGAAGTAGACATTCTTGAAATCAAAGCTTAACTCTCAGTTGAACGCTGAC
JMFF011O12+           CTTCATTCCCCGAAGTAGACATTCTTGAAATCAAAGCTTAACTCTCAGTTGAACGCTGAC
JMSF044D12+           CTTCATTCCCCGAAGTAGACATTCTTGAAATCAAAGCTTAACTCTCAGTTGAACGCTGAC
                      ____________________________________________________________
consensus             CTTCATTCCCCGAAGTAGACATTCTTGAAATCAAAGCTTAACTCTCAGTTGAACGCTGAC
 
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JMSF044H20+           TTTAGTTGAAGCTCCTCCCCGAATGAAGTCTTCGATTTCATGGCTAGACTTTGGTCTGGA
JMFF011O12+           TTTAGTTGAAGCTCCTCCCCGAATGAAGTCTTCGATTTCATGGCTAGACTTTGGTCTGGA
JMSF044D12+           TTTAGTTGAAGCTCCTCCCCGAATGAAGTCTTCGATTTCATGGCTAGACTTTGGTCTGGA
                      ____________________________________________________________
consensus             TTTAGTTGAAGCTCCTCCCCGAATGAAGTCTTCGATTTCATGGCTAGACTTTGGTCTGGA
 
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JMSF044H20+           AAACCCACTGTGTGGGTTGAGCGTCGAGACTAGACAGAGTCTGTGTGTTTGTGGAGGGCC
JMFF011O12+           AAACCCACTGTGTGGGTTGAGCGTCGAGACTAGA                          
JMSF044D12+           AAACCCACTGTGTGGGTTGAGCGTCGAGACTAGACAGAGTCTGTGTGTTTGTGGAGGGCC
                      ____________________________________________________________
consensus             AAACCCACTGTGTGGGTTGAGCGTCGAGACTAGACAGAGTCTGTGTGTTTGTGGAGGGCC