Contig 003852:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS002H12Sequence504003852 (5)ref|XP_004242994.1|2e-17PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum lycopersicum]
JMFS046C08Sequence636003852 (5)ref|XP_004242994.1|8e-60PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum lycopersicum]
JMFS135D03Sequence640003852 (5)ref|XP_004242994.1|2e-37PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum lycopersicum]
JMSF030F16Sequence689003852 (5)ref|NP_001289533.1|2e-76DNA-directed RNA polymerase 3, chloroplastic [Nicotiana sylvestris] sp|P69242.1|773010005 (2)ref|XP_009792610.1|3e-48PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic-like [Nicotiana sylves
JMSF043I23Sequence730003852 (5)ref|XP_004242994.1|6e-45PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum lycopersicum]717010005 (2)gb|KCW81138.1|5e-37hypothetical protein EUGRSUZ_C02511 [Eucalyptus grandis]

Alignment

This contig is upended


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JMSF030F16+                      CTATCAGCTGACTGATTGATTGTAGGTTGCACATAAGCTGTTTCCGTTA
                      ____________________________________________________________
consensus                        CTATCAGCTGACTGATTGATTGTAGGTTGCACATAAGCTGTTTCCGTTA
 
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JMSF030F16+           ATAATTCTATAAGACGGCATCCCAACTTAGCCCTTATTTCTTGACCCCAAGGCTCAAATT
                      ____________________________________________________________
consensus             ATAATTCTATAAGACGGCATCCCAACTTAGCCCTTATTTCTTGACCCCAAGGCTCAAATT
 
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JMSF030F16+           CTTCGTTTTTCAACAATTTTTGCACTTGAACTAGTCTGTTCTTTTTAATCAGCCATTGTA
                      ____________________________________________________________
consensus             CTTCGTTTTTCAACAATTTTTGCACTTGAACTAGTCTGTTCTTTTTAATCAGCCATTGTA
 
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JMSF030F16+           TCCGCTTTCTTAACCATATTGGATCCCTGCTTAAATCCTCTTGCTTTGGTGTTTCATTTG
JMFS046C08+                                                             GTTTCATTTG
                      ____________________________________________________________
consensus             TCCGCTTTCTTAACCATATTGGATCCCTGCTTAAATCCTCTTGCTTTGGTGTTTCATTTG
 
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JMSF030F16+           TTTGACTCTTGAGTTGCTTCGTTTTCTCCAAGAAACTATGAATTCTAACTTCATTCTCAA
JMFS046C08+           TTTGACTCTTGAGTTGCTTCGTTTTCTCCAAGAAACTATGAATTCTAACTTCATTCTCAA
                      ____________________________________________________________
consensus             TTTGACTCTTGAGTTGCTTCGTTTTCTCCAAGAAACTATGAATTCTAACTTCATTCTCAA
 
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JMSF030F16+           TTGCAGTGCCAATCTGCAATGCAGCTTGGAGTACTTGAACATACTTATTCTCGTTGCCAC
JMFS046C08+           TTGCAGTGCCAATCTGCAATGCAGCTTGGAGTACTTGAACATACTTATTCTCGTTGCCAC
JMSF043I23+                                                             TCGTTGCCAC
                      ____________________________________________________________
consensus             TTGCAGTGCCAATCTGCAATGCAGCTTGGAGTACTTGAACATACTTATTCTCGTTGCCAC
 
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JMSF030F16+           ACATCATCATCAACCCCATCATCTGATGCATCACAATGACGGACATTTTATCAGCCGGCA
JMFS046C08+           ACATCATCATCAACCCCATCATCTGATGCATCACAATGACGGACATTTTATCAGCCGGCA
JMSF043I23+           ACATCATCATCAACCCCATCATCTGATGCATCACAATGACGGACATTTTATCAGCCGGCA
                      ____________________________________________________________
consensus             ACATCATCATCAACCCCATCATCTGATGCATCACAATGACGGACATTTTATCAGCCGGCA
 
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JMSF030F16+           AAGAGTCAATGTAAGGCGAGTAAGCAGCCCTGTTCTTCTTAGTCCTCTGAGTCTTCTGCT
JMFS046C08+           AAGAGTCAATGTAAGGCGAGTAAGCAGCCCTGTTCTTCTTAGTCCTCTGAGTCTTCTGCT
JMFS135D03+                     GTAAGGCGAGTAAGCAGCCCTGTTCTTCTTAGTCCTCTGAGTCTTCTGCT
JMSF043I23+           AAGAGTCAATGTAAGGCGAGTAAGCAGCCCTGTTCTTCTTAGTCCTCTGAGTCTTCTGCT
                      ____________________________________________________________
consensus             AAGAGTCAATGTAAGGCGAGTAAGCAGCCCTGTTCTTCTTAGTCCTCTGAGTCTTCTGCT
 
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JMSF030F16+           CCTTCTCTATGGCATCTCTCAGGGGCTCAAACCACCCGAGGAAGAGTTTCTTCACATAAG
JMFS046C08+           CCTTCTCTATGGCATCTCTCAGGGGCTCAAACCACCCGAGGAAGAGTTTCTTCACATAAG
JMFS135D03+           CCTTCTCTATGGCATCTCTCAGGGGCTCAAACCACCCGAGGAAGAGTTTCTTCACATAAG
JMSF043I23+           CCTTCTCTATGGCATCTCTCAGGGGCTCAAACCACCCGAGGAAGAGTTTCTTCACATAAG
                      ____________________________________________________________
consensus             CCTTCTCTATGGCATCTCTCAGGGGCTCAAACCACCCGAGGAAGAGTTTCTTCACATAAG
 
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JMSF030F16+           GAAGGTTTGGCGCCAATTTCTTCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
JMFS046C08+           GAAGGTTTGGCGCCAATTTCTTCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
JMFS002H12+                  TGGCGCCAATTTCTTCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
JMFS135D03+           GAAGGTTTGGCGCCAATTTCTTCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
JMSF043I23+           GAAGGTTTGGCGCCAATTTCTCCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
                      ____________________________________________________________
consensus             GAAGGTTTGGCGCCAATTTCTTCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
 
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JMSF030F16+           CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
JMFS046C08+           CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
JMFS002H12+           CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
JMFS135D03+           CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
JMSF043I23+           CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
                      ____________________________________________________________
consensus             CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
 
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JMSF030F16+           TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCG                       
JMFS046C08+           TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCGTTCGATCTCCCTAGCCCTAACGA
JMFS002H12+           TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCGTTCGATCTCCCTAGCCCTAACGA
JMFS135D03+           TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCGTTCGATCTCCCTAGCCCTAACGA
JMSF043I23+           TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCGTTCGATCTCCCTAGCCCTAACGA
                      ____________________________________________________________
consensus             TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCGTTCGATCTCCCTAGCCCTAACGA
 
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JMFS046C08+           ACAAATTGTTGCTCAAGAAAAGAGAAGAAATCCAAGGTGGGTCTTGCACGAAAACTCTCC
JMFS002H12+           ACAAATTGTTGCTCAAGAAAAGAGAAGAAATCCAAGGTGGGTCTTGCACGAAAACTCTCC
JMFS135D03+           ACAAATTGTTGCTCAAGAAAAGAGAAGAAATCCAAGGTGGGTCTTGCACGAAAACTCTCC
JMSF043I23+           ACAAATTGTTGCTCAAGAAAAGAGAAGAAATCCAAGGTGGGTCTTGCACGAAAACTCTCC
                      ____________________________________________________________
consensus             ACAAATTGTTGCTCAAGAAAAGAGAAGAAATCCAAGGTGGGTCTTGCACGAAAACTCTCC
 
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JMFS046C08+           TGGTCGACTCCTCGGGCAAAATCGCGAGTGAGCCATTGGAGATTTTATGCGAATTTGATA
JMFS002H12+           TGGTCGACTCCTCGGGCAAAATCGCGAGTGAGCCATTGGAGATTTTATGCGAATTTGATA
JMFS135D03+           TGGTCGACTCCTCGGGCAAAATCGCGAGTGAGCCATTGGAGATTTTATGCGAATTTGATA
JMSF043I23+           TGGTCGACTCCTCGGGCAAAATCGCGAGTGAGCCATTGGAGATTTTATGCGAATTTGATA
                      ____________________________________________________________
consensus             TGGTCGACTCCTCGGGCAAAATCGCGAGTGAGCCATTGGAGATTTTATGCGAATTTGATA
 
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JMFS046C08+           TATCCTCCTGGGTTTGAGTCAATATC                                  
JMFS002H12+           TATCCTCCTGGGTTTGAGTCAATATCTCGTCTTTAGAAACTGAAACGGCGTACAAAACAA
JMFS135D03+           TATCCTCCTGGGTTTGAGTCAATATCTCGTCTTTAGAAACTGAAACGGCGTACAAAACAA
JMSF043I23+           TATCCTCCTGGGTTTGAGTCAATATCTCGTCTTTAGAAACTGAAACGGCGTACAAAACAA
                      ____________________________________________________________
consensus             TATCCTCCTGGGTTTGAGTCAATATCTCGTCTTTAGAAACTGAAACGGCGTACAAAACAA
 
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JMFS002H12+           GAGGCTTTGCCCGTTTGAGAGTGTGAATCTTCAAAAGTTGTGGGCTTTGCGACACAGCGA
JMFS135D03+           GAGGCTTTGCCCGTTTGAGAGTGTGAATCTTCAAAAGTTGTGGGCTTTGCGACACAGCGA
JMSF043I23+           GAGGCTTTGCCCGTTTGAGAGTGTGAATCTTCAAAAGTTGTGGGCTTTGCGACACAGCGA
                      ____________________________________________________________
consensus             GAGGCTTTGCCCGTTTGAGAGTGTGAATCTTCAAAAGTTGTGGGCTTTGCGACACAGCGA
 
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JMFS002H12+           GTGGTTCAGTGGTTTCTGGTTTAGGATTGGCACGGGGGTTTTGGGGTAGTCTCCGTGTAG
JMFS135D03+           GTGGTTCAGTGGTTTCTGGTTTAGGATTGGCACGGGGGTTTTGGGGTAGTCTCCGTGTAG
JMSF043I23+           GTGGTTCAGTGGTTTCTGGTTTAGGATTGGCACGGGGGTTTTGGGGTAGTCTCCGTGTAG
                      ____________________________________________________________
consensus             GTGGTTCAGTGGTTTCTGGTTTAGGATTGGCACGGGGGTTTTGGGGTAGTCTCCGTGTAG
 
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JMFS002H12+           CGGAGAAGTGAGGTATTGAGTAGAGAGAATA                             
JMFS135D03+           CGGAGAAGTGAGGTATTGAGTAGAGAGAATAGGCTGTGGAAGCCATGGAA          
JMSF043I23+           CGGAGAAGTGAGGTATTGAGTAGAGAGAATAGGCTGTGGAAGCCATGGAATAGAAGCCCC
                      ____________________________________________________________
consensus             CGGAGAAGTGAGGTATTGAGTAGAGAGAATAGGCTGTGGAAGCCATGGAATAGAAGCCCC