Contig 003850:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030A01Sequence475003850 (6)ref|XP_006380555.1|5e-06hypothetical protein POPTR_0007s09220g [Populus trichocarpa] ref|XP_006380556.1|648003850 (6)ref|XP_010266045.1|1e-97PREDICTED: probable protein phosphatase 2C 60 [Nelumbo nucifera] ref|XP_01026604
JMFN034A01Sequence626003850 (6)ref|XP_009803756.1|6e-136PREDICTED: probable protein phosphatase 2C 60 isoform X1 [Nicotiana sylvestris]
JMFS057G04Sequence385003850 (6)ref|XP_010266045.1|9e-19PREDICTED: probable protein phosphatase 2C 60 [Nelumbo nucifera] ref|XP_01026604
JMSF039A05Sequence686003850 (6)ref|XP_006343345.1|2e-26PREDICTED: probable protein phosphatase 2C 60-like isoform X1 [Solanum tuberosu328004370 (3)
JMSF043F07Sequence809003850 (6)ref|XP_006343345.1|4e-45PREDICTED: probable protein phosphatase 2C 60-like isoform X1 [Solanum tuberosu153004370 (3)

Alignment

This contig is upended


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JMFS057G04+                                         ACTTCTCTAGTTGTTTTTTTTTTTTTCTTT
                      ____________________________________________________________
consensus                                           ACTTCTCTAGTTGTTTTTTTTTTTTTCTTT
 
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JMFS057G04+           TGATTAACTAACCAAAACACGGATGGATGTTACAAAGACACTGAAAAGGGTGTTGTATAC
rJMFF030A01-                                              GACACTGAAAAGGGTGTTGTATAC
                      ____________________________________________________________
consensus             TGATTAACTAACCAAAACACGGATGGATGTTACAAAGACACTGAAAAGGGTGTTGTATAC
 
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JMFS057G04+           CACATAGGAAAAGGTTTTGTTTTTGTTTTTTTTCTAGGATGCCCCAAGCCCTGTTGCTAC
rJMFF030A01-          CACATAGGAAAAGGTTTTGTTTTTGTTTTTTTTCTAGGATGCCCCAAGCCCTGTTGCTAC
                      ____________________________________________________________
consensus             CACATAGGAAAAGGTTTTGTTTTTGTTTTTTTTCTAGGATGCCCCAAGCCCTGTTGCTAC
 
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JMFS057G04+           AGCAGAACCACAAGGAGCCAAGGTTTTTGCCGCCGGCCCGTTGAACCCCCCGCCTCTCAC
rJMFF030A01-          AGCAGAACCACAAGGAGCCAAGGTTTTTGCCGCCGGCCCGTTGAACCCCCCGCCTCTCAC
                      ____________________________________________________________
consensus             AGCAGAACCACAAGGAGCCAAGGTTTTTGCCGCCGGCCCGTTGAACCCCCCGCCTCTCAC
 
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JMFS057G04+           GGATAGCGTCGGGCCTCTTAGCGAACTGGCTCTACTCACGAGGCTCGAGTCCAGGCTACA
rJMFF030A01-          GGATAGCGTCGGGCCTCTTAGCGAACTGGCTCTACTCACGAGGCTCGAGTCCAGG-AACA
                      ____________________________________________________________
consensus             GGATAGCGTCGGGCCTCTTAGCGAACTGGCTCTACTCACGAGGCTCGAGTCCAGGCTACA
 
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JMFS057G04+           GAACCACCACGGTGATGTCGTCATGGAAGTGCCTACGAACGCCCCGGTCTATCTTCTTCA
rJMFF030A01-          GAACCACCACGGTGATGTCGTCATGGAAGTGCCTACGAACGCCCCGGTCTATCTTCTTCA
                      ____________________________________________________________
consensus             GAACCACCACGGTGATGTCGTCATGGAAGTGCCTACGAACGCCCCGGTCTATCTTCTTCA
 
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JMFS057G04+           GATCGGAGTACCTCATCTCTCTTTTCTTCGCTGCTTCTTGTAGCGCAGCTTTC       
rJMFF030A01-          GATCGGAGTACCTCATCTCTCTTTTCTTCGCTGCTTCTTGTAGCGCAGCTTTCACGAGCC
                      ____________________________________________________________
consensus             GATCGGAGTACCTCATCTCTCTTTTCTTCGCTGCTTCTTGTAGCGCAGCTTTCACGAGCC
 
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rJMFF030A01-          TCCGAGCACTTCCATTTCGAGTGCCATTCTGTACAATATCGACCGCCTCTTGATTGCTGA
                      ____________________________________________________________
consensus             TCCGAGCACTTCCATTTCGAGTGCCATTCTGTACAATATCGACCGCCTCTTGATTGCTGA
 
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rJMFF030A01-          GGTGTTCCCAGAGACCATCAGATGCAAATATGAGAAATTGGTCATGCGGCTCAAGTTCGT
JMFN034A01+                                  GCAAATATGAGAAATTGGTCATGCGGCTCAAGTTCGT
                      ____________________________________________________________
consensus             GGTGTTCCCAGAGACCATCAGATGCAAATATGAGAAATTGGTCATGCGGCTCAAGTTCGT
 
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rJMFF030A01-          GCACCAAAATCGACGGCTCTGAGCTCAATATCGGCCTGTCAAGCGGCTCCCGCAAGCGAA
JMFN034A01+           GCACCAAAATCGACGGCTCTGAGCTCAATATCGGCCTGTCAAACGGCTCCCGCAAGCGAA
                      ____________________________________________________________
consensus             GCACCAAAATCGACGGCTCTGAGCTCAATATCGGCCTGTCAAGCGGCTCCCGCAAGCGAA
 
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rJMFF030A01-          ATTTGGCGTACAAAGGCTCTTTGTTGTACTCCGCCTTCTTGAGGTATAAATCGCCAATCG
JMFN034A01+           ATTTGGCGTACAAAGGCTCTTTGTTGTACTCCGCCTTCTTGAGGTATAAATCGCCAATCG
                      ____________________________________________________________
consensus             ATTTGGCGTACAAAGGCTCTTTGTTGTACTCCGCCTTCTTGAGGTATAAATCGCCAATCG
 
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rJMFF030A01-          ATCTANAAACCTGAATCAAGCCCTTCACCCGCCATACATTATGCTTCAAAACAACAATCT
JMFN034A01+           ATCTAGAAACCTGAATCAAGCCCTTCACCCGCCATACATTATGCTTCAAAACAACAATCT
                      ____________________________________________________________
consensus             ATCTAGAAACCTGAATCAAGCCCTTCACCCGCCATACATTATGCTTCAAAACAACAATCT
 
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rJMFF030A01-          GTGAATCATC                                                  
JMFN034A01+           GTGAATCATCGGGATGCATAGAATGCAGCTCCTGTCGAATAGACTCTATACTCGCGTTAT
                      ____________________________________________________________
consensus             GTGAATCATCGGGATGCATAGAATGCAGCTCCTGTCGAATAGACTCTATACTCGCGTTAT
 
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JMFN034A01+           GCTCAGTCGAGAGCTGGATGGCGAGAACCTCCCCCGTCGCCTTCACAAGCCTCCCCATGA
                      ____________________________________________________________
consensus             GCTCAGTCGAGAGCTGGATGGCGAGAACCTCCCCCGTCGCCTTCACAAGCCTCCCCATGA
 
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JMFN034A01+           CAGCCCGTGAATCTCCGAGATTAGCAATGTAGAGGGTCCCGTCACAAACAATCCCGACAA
                      ____________________________________________________________
consensus             CAGCCCGTGAATCTCCGAGATTAGCAATGTAGAGGGTCCCGTCACAAACAATCCCGACAA
 
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JMFN034A01+           GGCAGCAAGATCCTACAGCAGCCATCTGCGGGTTCATTGGCCACTGCTTGGCAACCACCG
                      ____________________________________________________________
consensus             GGCAGCAAGATCCTACAGCAGCCATCTGCGGGTTCATTGGCCACTGCTTGGCAACCACCG
 
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JMFN034A01+           AAAGAAATCCCTCTTCTGTTGCCTGAAACGCTTTCCGTATCACATCCACTGACATTGCAT
                      ____________________________________________________________
consensus             AAAGAAATCCCTCTTCTGTTGCCTGAAACGCTTTCCGTATCACATCCACTGACATTGCAT
 
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JMFN034A01+           TTTGCTCTGCTGAAAACCTCTTGAGATTCTGGAAAAGGTGATCATTGATGTAGCGGGAAG
JMSF043F07+                                          GAAAAGATGATCATTGATGTAGCGGGAAG
                      ____________________________________________________________
consensus             TTTGCTCTGCTGAAAACCTCTTGAGATTCTGGAAAAGGTGATCATTGATGTAGCGGGAAG
 
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JMFN034A01+           TTTCTGGTCCTCCATGG-CCATCGTATATTCCTACAAACGTTCCAAACGG          
JMSF043F07+           TTTNTGGTCCTCCATGGNCCATCGTATATTCCTACAAACGTTCCAAACGGGCCAGAATCG
                      ____________________________________________________________
consensus             TTTCTGGTCCTCCATGGNCCATCGTATATTCCTACAAACGTTCCAAACGGGCCAGAATCG
 
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JMSF039A05+                                                 CTCGAGCAAATTGTTGGCCTGG
JMSF043F07+           AGCAAGCTCAAAGAGCCAGACTCGATCTGGCTTTGATCCTCGAGCAAATTGTTGGCCTGG
                      ____________________________________________________________
consensus             AGCAAGCTCAAAGAGCCAGACTCGATCTGGCTTTGATCCTCGAGCAAATTGTTGGCCTGG
 
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JMSF039A05+           ACAACGGCCATCGAGAAATCCCCAATAAGATGCTGCCCGCTATCCTNGTACCAAAGAAGC
JMFF030A01+                                                            ACCAAAGAAGC
JMSF043F07+           ACAACGGCCATCGAGAAATCCCCAATAAGATGCTGCCCGCTATCCTTGTACCAAAGAAGC
                      ____________________________________________________________
consensus             ACAACGGCCATCGAGAAATCCCCAATAAGATGCTGCCCGCTATCCTTGTACCAAAGAAGC
 
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JMSF039A05+           CCATCTTGCCTCCCAGCAGCTTCAGAACCCGAATGCACATGGGCATCGGACGATGGTCGC
JMFF030A01+           CCATCTTGCCTCCCAGCAGCTTCAGAACCCGAATGCACATGGG-GTCGGACGATGGTCGC
JMSF043F07+           CCATCTTGCCTCCCAGCAGCTTCAGAACCCGAATGCACATGGGCATCGGACGATGGTCGC
                      ____________________________________________________________
consensus             CCATCTTGCCTCCCAGCAGCTTCAGAACCCGAATGCACATGGGCATCGGACGATGGTCGC
 
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JMSF039A05+           CAACAGGCCTTGAGGAAATTTATCAACCTCGATAACATCCCTCATTTCATCAACATCCAA
JMFF030A01+           CAACAGGCCTTGAGGAAATTTATCAACCTCGATAACATCCCTCATTTCATCAACATCCAA
JMSF043F07+           CAACAGGCCTTGAGGAAATTTATCAACCTCGATAACATCCCTCATTTCATCAACATCCAA
                      ____________________________________________________________
consensus             CAACAGGCCTTGAGGAAATTTATCAACCTCGATAACATCCCTCATTTCATCAACATCCAA
 
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JMSF039A05+           AACGGATGCAACTAAAATCTTCCCACCACTAATCTCTCTTACCCTACAATTCAAAAACAA
JMFF030A01+           AACGGATGCAACTAAAATCTTCCCACCACTAATCTCTCTTACCCTACAATTCAAAAACAA
JMSF043F07+           AACGGATGCAACTAAAATCTTCCCACCACTAATCTCTCTTACCCTACAATTCAAAAACAA
                      ____________________________________________________________
consensus             AACGGATGCAACTAAAATCTTCCCACCACTAATCTCTCTTACCCTACAATTCAAAAACAA
 
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JMSF039A05+           CAAGCAGTGTGATTAGAGCCCCTTTATGCCATGTATTGCAGTCAGTTACTGAACCTTGCC
JMFF030A01+           CAAGCAGTGTGATTAGAGCCCCTTTATGCCATGTATTGCAGTCAGTTACTGAACCTTGCC
JMSF043F07+           CAAGCAGTGTGATTAGAGCCCCTTTATGCCATGTATTGCAGTCAGTTACTGAACCTTGCC
                      ____________________________________________________________
consensus             CAAGCAGTGTGATTAGAGCCCCTTTATGCCATGTATTGCAGTCAGTTACTGAACCTTGCC
 
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JMSF039A05+           AACTGAAAAGGACTGAGATCTGAATCAAACTTAGCAAACTATGCGTTTCTCAAAGGGTTA
JMFF030A01+           AACTGAAAAGGACTGAGATCTGAATCAAACTTAGCAAACTATGCGTTTCTCAAAGGGTTA
JMSF043F07+           AACTGAAAAGGACTGAGATCTGAATCAAACTTAGCAAACTATGCGTTTCTCAAAGGGTTA
                      ____________________________________________________________
consensus             AACTGAAAAGGACTGAGATCTGAATCAAACTTAGCAAACTATGCGTTTCTCAAAGGGTTA
 
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JMSF039A05+           GATCTATAGATCCATCAAACACCCACTTCCATATATTCACTAATATACTCAACACTTACA
JMFF030A01+           GATCTATAGATCCATCAAACACCCACTTCCATATATTCACTAATATACTCAACACTTACA
JMSF043F07+           GATCTATAGATCCATCAAACACCCACTTCCATATATTCACTAATATACTCAACACTTACA
                      ____________________________________________________________
consensus             GATCTATAGATCCATCAAACACCCACTTCCATATATTCACTAATATACTCAACACTTACA
 
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JMSF039A05+           AAATATAGAGAAAAAGAGAGAAAATTATACTGCAAATTCCCCTTCCTTCCTCTGATTCTT
JMFF030A01+           AAATATAGAGAAAAAGAGAGAAAATTATACTGCAAATTCCCCTTCCTTCCTCTGATTCTT
JMSF043F07+           AAATATAGAGAAAAAGAGAGAAAATTATACTGCAAATTCCCCTTCCTTCCTCTGATTCTT
                      ____________________________________________________________
consensus             AAATATAGAGAAAAAGAGAGAAAATTATACTGCAAATTCCCCTTCCTTCCTCTGATTCTT
 
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JMSF039A05+           GTTTTCCTTCATTGAACCAAGAAGAAGATAAAGGTGGCTCCTTTCTAAACCAGTGTGTGT
JMFF030A01+           GTTTTCCTTCATTGAACCAAGAAGAAGATAAAGGTGGCTCCTTT                
JMSF043F07+           GTTTTCCTTCATTGAACCAAGAAGAAGATAAAGGTGGCTCCTTTCTAAACCAGTGTGTGT
                      ____________________________________________________________
consensus             GTTTTCCTTCATTGAACCAAGAAGAAGATAAAGGTGGCTCCTTTCTAAACCAGTGTGTGT
 
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JMSF039A05+           GATTGAACCAACTCAATAACTCTTCTGTGTTTATTACTACTAGTTTTTGTGTATTGCCTT
JMSF043F07+           GATTGAACCAACTCAATAACTCTTCTGTGTTTATTACTACTAGTTTTTGTGTATTGCCTT
                      ____________________________________________________________
consensus             GATTGAACCAACTCAATAACTCTTCTGTGTTTATTACTACTAGTTTTTGTGTATTGCCTT
 
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JMSF039A05+           TTTCCTTTTCTTTCTTTCTTTCCTTCTCTCTACCTCACTCTTATCTCTCTCTACTT    
JMSF043F07+           TTTCCTTTTCTTTCTTTCTTTCCTTCTCTCTACCTCACTCTTATCTCTCTCTACTTCCTC
                      ____________________________________________________________
consensus             TTTCCTTTTCTTTCTTTCTTTCCTTCTCTCTACCTCACTCTTATCTCTCTCTACTTCCTC