Contig 003845:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP020B04Sequence428003845 (4)gb|KHN33357.1|8e-20hypothetical protein glysoja_005399 [Glycine soja]
JMFF007E16Sequence655003845 (4)emb|CDP09102.1|2e-42unnamed protein product [Coffea canephora]780009622 (3)emb|CDP09102.1|7e-56unnamed protein product [Coffea canephora]
JMSF036O24Sequence220003845 (4)570009622 (3)ref|XP_009622244.1|4e-30PREDICTED: transcription initiation factor IIA large subunit {ECO:0000250|UniPr
JMSF042N12Sequence794003845 (4)emb|CDP09102.1|2e-58unnamed protein product [Coffea canephora]735009622 (3)emb|CDP09102.1|2e-50unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042N12+ GGTTGCATATAAGG
                      ____________________________________________________________
consensus GGTTGCATATAAGG
 
. : . : . : . : . : . :
JMSF042N12+ GCTAGGCCTCCCTTGAGCAGGTTTAACATCGGGGACATCATTNTCATTCACAGAAGAGTA
                      ____________________________________________________________
consensus GCTAGGCCTCCCTTGAGCAGGTTTAACATCGGGGACATCATTNTCATTCACAGAAGAGTA
 
. : . : . : . : . : . :
JMSF042N12+ TTCATTGGGGGTGATNGGAGTGCCACCAGTAGCAATATTATACAAAGAACTATCTGCTGG
                      ____________________________________________________________
consensus TTCATTGGGGGTGATNGGAGTGCCACCAGTAGCAATATTATACAAAGAACTATCTGCTGG
 
. : . : . : . : . : . :
JMFF007E16+ TGAGCAGTTCCAGGTAATGGAGTTTGAGCTGTTCCTGGCAATGGTGTAGGGGCCGG
JMSF042N12+ TGTCTGAGCAGTTCCAGGTAATGGAGTTTGAGCTGTTCCTGGCAATGGTGTAGGGGCCGG
                      ____________________________________________________________
consensus TGTCTGAGCAGTTCCAGGTAATGGAGTTTGAGCTGTTCCTGGCAATGGTGTAGGGGCCGG
 
. : . : . : . : . : . :
JMFF007E16+ GGTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGG
JMCP020B04- GTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGG
JMSF042N12+ GGTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGG
                      ____________________________________________________________
consensus GGTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGG
 
. : . : . : . : . : . :
JMFF007E16+ TAGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGG
JMCP020B04- TAGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGG
JMSF042N12+ TAGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGG
                      ____________________________________________________________
consensus TAGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGG
 
. : . : . : . : . : . :
JMFF007E16+ AGGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATT
JMCP020B04- AGGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATT
JMSF042N12+ AGGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATT
                      ____________________________________________________________
consensus AGGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATT
 
. : . : . : . : . : . :
JMFF007E16+ AAGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGAGTTCCTCTC
JMCP020B04- AAGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGTGTTCCTCTC
JMSF042N12+ AAGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGAGTTCCTCTC
                      ____________________________________________________________
consensus AAGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGAGTTCCTCTC
 
. : . : . : . : . : . :
JMFF007E16+ AATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATATTCCTTGGAGCTC
JMCP020B04- AATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATAT
JMSF042N12+ AATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATATTCCTTGGAGCTC
                      ____________________________________________________________
consensus AATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATATTCCTTGGAGCTC
 
. : . : . : . : . : . :
JMFF007E16+ GTTGAGGACGCTTTCTCCGGGACCACCATTGTTGATGAACTCTTCGCGGACCTTATTGAT
JMSF042N12+ GTTGAGGACGCTTTCTCCGGGACCACCATTGTTGATGAACTCTTCGCGGACCTTATTGAT
                      ____________________________________________________________
consensus GTTGAGGACGCTTTCTCCGGGACCACCATTGTTGATGAACTCTTCGCGGACCTTATTGAT
 
. : . : . : . : . : . :
JMFF007E16+ GACGTCCTCGATAACGTGGATGTAAACATTGCTGGTATTATTACTAGCCATATCTCAGCA
JMSF036O24+ GGATGTAAACATTNNTGNTATTATTACTAGCCATATCTCANCA
JMSF042N12+ GACGTCCTCGATAACGTGGATGTAAACATTGCTGGTATTATTACTAGCCATATCTCAGCA
                      ____________________________________________________________
consensus GACGTCCTCGATAACGTGGATGTAAACATTGCTGGTATTATTACTAGCCATATCTCAGCA
 
. : . : . : . : . : . :
JMFF007E16+ CCTCAAATCCTCGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGT
JMSF036O24+ CCTCAAATCCTNGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGT
JMSF042N12+ CCTCAAATCCTCGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGT
                      ____________________________________________________________
consensus CCTCAAATCCTCGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGT
 
. : . : . : . : . : . :
JMFF007E16+ CCCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGGA
JMSF036O24+ CCCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGNA
JMSF042N12+ CCCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGGA
                      ____________________________________________________________
consensus CCCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGGA
 
. : . : . : . : . : . :
JMFF007E16+ GGAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAGA
JMSF036O24+ GGAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAGA
JMSF042N12+ GGAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAGACAGGGGGCGGAACG
                      ____________________________________________________________
consensus GGAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAGACAGGGGGCGGAACG