| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP020B04 | Sequence | 428 | 003845 (4) | gb|KHN33357.1| | 8e-20 | hypothetical protein glysoja_005399 [Glycine soja] | |||||
| JMFF007E16 | Sequence | 655 | 003845 (4) | emb|CDP09102.1| | 2e-42 | unnamed protein product [Coffea canephora] | 780 | 009622 (3) | emb|CDP09102.1| | 7e-56 | unnamed protein product [Coffea canephora] |
| JMSF036O24 | Sequence | 220 | 003845 (4) | 570 | 009622 (3) | ref|XP_009622244.1| | 4e-30 | PREDICTED: transcription initiation factor IIA large subunit {ECO:0000250|UniPr | |||
| JMSF042N12 | Sequence | 794 | 003845 (4) | emb|CDP09102.1| | 2e-58 | unnamed protein product [Coffea canephora] | 735 | 009622 (3) | emb|CDP09102.1| | 2e-50 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF042N12+ GGTTGCATATAAGG
____________________________________________________________
consensus GGTTGCATATAAGG
. : . : . : . : . : . :
JMSF042N12+ GCTAGGCCTCCCTTGAGCAGGTTTAACATCGGGGACATCATTNTCATTCACAGAAGAGTA
____________________________________________________________
consensus GCTAGGCCTCCCTTGAGCAGGTTTAACATCGGGGACATCATTNTCATTCACAGAAGAGTA
. : . : . : . : . : . :
JMSF042N12+ TTCATTGGGGGTGATNGGAGTGCCACCAGTAGCAATATTATACAAAGAACTATCTGCTGG
____________________________________________________________
consensus TTCATTGGGGGTGATNGGAGTGCCACCAGTAGCAATATTATACAAAGAACTATCTGCTGG
. : . : . : . : . : . :
JMFF007E16+ TGAGCAGTTCCAGGTAATGGAGTTTGAGCTGTTCCTGGCAATGGTGTAGGGGCCGG
JMSF042N12+ TGTCTGAGCAGTTCCAGGTAATGGAGTTTGAGCTGTTCCTGGCAATGGTGTAGGGGCCGG
____________________________________________________________
consensus TGTCTGAGCAGTTCCAGGTAATGGAGTTTGAGCTGTTCCTGGCAATGGTGTAGGGGCCGG
. : . : . : . : . : . :
JMFF007E16+ GGTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGG
JMCP020B04- GTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGG
JMSF042N12+ GGTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGG
____________________________________________________________
consensus GGTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGG
. : . : . : . : . : . :
JMFF007E16+ TAGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGG
JMCP020B04- TAGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGG
JMSF042N12+ TAGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGG
____________________________________________________________
consensus TAGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGG
. : . : . : . : . : . :
JMFF007E16+ AGGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATT
JMCP020B04- AGGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATT
JMSF042N12+ AGGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATT
____________________________________________________________
consensus AGGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATT
. : . : . : . : . : . :
JMFF007E16+ AAGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGAGTTCCTCTC
JMCP020B04- AAGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGTGTTCCTCTC
JMSF042N12+ AAGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGAGTTCCTCTC
____________________________________________________________
consensus AAGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGAGTTCCTCTC
. : . : . : . : . : . :
JMFF007E16+ AATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATATTCCTTGGAGCTC
JMCP020B04- AATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATAT
JMSF042N12+ AATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATATTCCTTGGAGCTC
____________________________________________________________
consensus AATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATATTCCTTGGAGCTC
. : . : . : . : . : . :
JMFF007E16+ GTTGAGGACGCTTTCTCCGGGACCACCATTGTTGATGAACTCTTCGCGGACCTTATTGAT
JMSF042N12+ GTTGAGGACGCTTTCTCCGGGACCACCATTGTTGATGAACTCTTCGCGGACCTTATTGAT
____________________________________________________________
consensus GTTGAGGACGCTTTCTCCGGGACCACCATTGTTGATGAACTCTTCGCGGACCTTATTGAT
. : . : . : . : . : . :
JMFF007E16+ GACGTCCTCGATAACGTGGATGTAAACATTGCTGGTATTATTACTAGCCATATCTCAGCA
JMSF036O24+ GGATGTAAACATTNNTGNTATTATTACTAGCCATATCTCANCA
JMSF042N12+ GACGTCCTCGATAACGTGGATGTAAACATTGCTGGTATTATTACTAGCCATATCTCAGCA
____________________________________________________________
consensus GACGTCCTCGATAACGTGGATGTAAACATTGCTGGTATTATTACTAGCCATATCTCAGCA
. : . : . : . : . : . :
JMFF007E16+ CCTCAAATCCTCGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGT
JMSF036O24+ CCTCAAATCCTNGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGT
JMSF042N12+ CCTCAAATCCTCGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGT
____________________________________________________________
consensus CCTCAAATCCTCGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGT
. : . : . : . : . : . :
JMFF007E16+ CCCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGGA
JMSF036O24+ CCCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGNA
JMSF042N12+ CCCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGGA
____________________________________________________________
consensus CCCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGGA
. : . : . : . : . : . :
JMFF007E16+ GGAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAGA
JMSF036O24+ GGAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAGA
JMSF042N12+ GGAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAGACAGGGGGCGGAACG
____________________________________________________________
consensus GGAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAGACAGGGGGCGGAACG