Contig 003844:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS014F08Sequence580003844 (2)gb|KDO46463.1|3e-27hypothetical protein CISIN_1g0416412mg, partial [Citrus sinensis]
JMSF042M02Sequence798003844 (2)ref|XP_006446987.1|8e-62hypothetical protein CICLE_v10016174mg [Citrus clementina] gb|ESR60227.1| hypoth664018308ref|XP_009610411.1|3e-98PREDICTED: acyltransferase-like protein At3g26840, chloroplastic isoform X2 [Ni

Alignment

This contig is upended


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JMSF042M02+                                                     AAAGTCAATAAATTTTGC
                      ____________________________________________________________
consensus                                                       AAAGTCAATAAATTTTGC
 
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JMSF042M02+           AGCCAAGATCTGCTGAAACATGTAGCTGGGTTGGCCAAAATTAATACAAGATCAATATCA
                      ____________________________________________________________
consensus             AGCCAAGATCTGCTGAAACATGTAGCTGGGTTGGCCAAAATTAATACAAGATCAATATCA
 
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JMSF042M02+           GGATTACGAGCAGCAACAGCTAGTGCAATACATGCGCCAAATGACTCTCCAATGAGATAT
                      ____________________________________________________________
consensus             GGATTACGAGCAGCAACAGCTAGTGCAATACATGCGCCAAATGACTCTCCAATGAGATAT
 
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JMFS014F08+                                                                     CC
JMSF042M02+           ATGGGTCTTTTCGGTGCATTACAATACTCTGACCTAACAGTTTCTTCAACCAGCTTCACC
                      ____________________________________________________________
consensus             ATGGGTCTTTTCGGTGCATTACAATACTCTGACCTAACAGTTTCTTCAACCAGCTTCACC
 
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JMFS014F08+           AAATCTGTGAATGAGGTTCGATCTGTAAGTGGAATATGCAAGCACCAAACATCAAAAATC
JMSF042M02+           AAATCTGTGAATGAGGTTCGATCTGTAAGTGGAATATGCAAGCACCAAACATCAAAAATC
                      ____________________________________________________________
consensus             AAATCTGTGAATGAGGTTCGATCTGTAAGTGGAATATGCAAGCACCAAACATCAAAAATC
 
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JMFS014F08+           TCTCCCAGTTTTNTGTGGTGTGGTAAAAGTCCAAGTCCAACACCATCAATGCCTGGTAAA
JMSF042M02+           TCTCCCAGTTTTTTGTGGTGTGGTAAAAGTCCAAGTCCAACACCATCAATGCCTGGTAAA
                      ____________________________________________________________
consensus             TCTCCCAGTTTTTTGTGGTGTGGTAAAAGTCCAAGTCCAACACCATCAATGCCTGGTAAA
 
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JMFS014F08+           AAGAGCAAGAGCGGAGACTGCTGTGACCGCGAGGCGCACTCCAATGGAGAAAACCAGCGC
JMSF042M02+           AAGAGCAAGAGCGGAGACTGCTGTGACCGCGAGGCGCACTCCAATGGAGAAAACCAGCGC
                      ____________________________________________________________
consensus             AAGAGCAAGAGCGGAGACTGCTGTGACCGCGAGGCGCACTCCAATGGAGAAAACCAGCGC
 
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JMFS014F08+           GGCGGCCCGCCGTCTGATCTGAGCATCTGTTTCGACTGTTGGAAGTAATCCTTCAGGCTC
JMSF042M02+           GGCGGCCCGCCGTCTGATCTGAGCATCTGTTTCGACTGTTGGAAGTAATCCTTCAGGCTC
                      ____________________________________________________________
consensus             GGCGGCCCGCCGTCTGATCTGAGCATCTGTTTCGACTGTTGGAAGTAATCCTTCAGGCTC
 
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JMFS014F08+           AAACCTCCCCCGTCGTCTGAGACCGGGTCAGATTCCCAGCCATACTTTCTTCTAGAATTA
JMSF042M02+           AAACCTCCCCCGTCGTCTGAGACCGGGTCAGATTCCCAGCCATACTTTCTTCTAGAATTA
                      ____________________________________________________________
consensus             AAACCTCCCCCGTCGTCTGAGACCGGGTCAGATTCCCAGCCATACTTTCTTCTAGAATTA
 
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JMFS014F08+           GGAGACGTATTTGTATAAGTTTGTGTTGCCGCGTTGCTGGCGGAGCTGCCGTTAGTCTGA
JMSF042M02+           GGAGACGTATTTGTATAAGTTTGTGTTGCCGCGTTGCTGGCGGAGCTGCCGTTAGTCTGA
                      ____________________________________________________________
consensus             GGAGACGTATTTGTATAAGTTTGTGTTGCCGCGTTGCTGGCGGAGCTGCCGTTAGTCTGA
 
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JMFS014F08+           AGGGATGGTTGGTGAGGATAGTTATCTTCTTGCGGATCAGCGGAGACACCTGAATTCCTG
JMSF042M02+           AGGGATGGTTGGTGAGGATAGTTATCTTCTTGCGGATCAGCGGAGACACCTGAATTCCTG
                      ____________________________________________________________
consensus             AGGGATGGTTGGTGAGGATAGTTATCTTCTTGCGGATCAGCGGAGACACCTGAATTCCTG
 
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JMFS014F08+           ATGGTTACACTTGCGAAAGCAGCCGGATCTTTTGACCCCGGGAAAGAAAACAATCTTGTG
JMSF042M02+           ATGGTTACACTTGCGAAAGCAGCCGGATCTTTTGACCCCGGGAAAGAAAACAATCTTGTG
                      ____________________________________________________________
consensus             ATGGTTACACTTGCGAAAGCAGCCGGATCTTTTGACCCCGGGAAAGAAAACAATCTTGTG
 
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JMFS014F08+           GTCCGGAATGGAAATGGAGACGGCGACGACAACATGCAACCGGAAACGGAAAGGGCAGTC
JMSF042M02+           GTCCGGAATGGAAATGGAGACGGCGACGACAACATGCAACCGGAAACGGAAAGGGCAGTC
                      ____________________________________________________________
consensus             GTCCGGAATGGAAATGGAGACGGCGACGACAACATGCAACCGGAAACGGAAAGGGCAGTC
 
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JMFS014F08+           CCTACAGCCATGCCTCTTCCTCGATCTGTCACTCTGTT                      
JMSF042M02+           CCTACAGCCATGCCTCTTCCTCGATCTGTCACTCTGTTTCAAGTTTCAAGTTTCAACTCC
                      ____________________________________________________________
consensus             CCTACAGCCATGCCTCTTCCTCGATCTGTCACTCTGTTTCAAGTTTCAAGTTTCAACTCC