Contig 003842:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF042K18+                                               GAGGCAAGCCACGGAGAATCCGG
JMSF042K18-                                                GAGGCAAGCCACGGAGAATCCGG
                      ____________________________________________________________
consensus                                                  GAGGCAAGCCACGGAGAATCCGG
 
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rJMSF042K18+          ATTCTTTCTGAAGCGAAAATGGTCTGCTTGGCATGTCTGTTACCGCTCTTCCTTGTTCCA
JMSF042K18-           ATTCTTTCTGAAGCGAAAATGGTCTGCTTGGCATGTCTGTTACCGCTCTTCCTTGTTCCA
                      ____________________________________________________________
consensus             ATTCTTTCTGAAGCGAAAATGGTCTGCTTGGCATGTCTGTTACCGCTCTTCCTTGTTCCA
 
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rJMSF042K18+          ATTGTCAACCTTTTGCCCCTTCTCTTCGATTTCTTCATGGCAAAGGTTTACAGATTATTT
JMSF042K18-           ATTGTCAACCTTTTGCCCCTTCTCTTCGATTTCTTCATGGCAAAGGTTTACAGATTATTT
                      ____________________________________________________________
consensus             ATTGTCAACCTTTTGCCCCTTCTCTTCGATTTCTTCATGGCAAAGGTTTACAGATTATTT
 
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rJMSF042K18+          GGGAAGGAGTATCAAAAACCTGCAAGGGTTCCTCCTGCTTGTCCGTATAAACCATCGGCC
JMSF042K18-           GGGAAGGAGTATCAAAAACCTGCAAGGGTTCCTCCTGCTTGTCCGTATAAACCATCGGCC
                      ____________________________________________________________
consensus             GGGAAGGAGTATCAAAAACCTGCAAGGGTTCCTCCTGCTTGTCCGTATAAACCATCGGCC
 
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rJMSF042K18+          ACCAAACCCAATAATTCAGTTTCAGAAGGACCTTCTCCTATAGACCAAGATCCTCACAGG
JMSF042K18-           ACCAAACCCAATAATTCAGTTTCAGAAGGACCTTCTCCTATAGACCAAGATCCTCACAGG
                      ____________________________________________________________
consensus             ACCAAACCCAATAATTCAGTTTCAGAAGGACCTTCTCCTATAGACCAAGATCCTCACAGG
 
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rJMSF042K18+          CAGATATCGGCTGGAGGTGATGATGGCAAGCGTGAATGAAAGTTTTACCATTTTATGTGA
JMSF042K18-           CAGATATCGGCTGGAGGTGATGATGGCAAGCGTGAATGAAAGTTTTACCATTTTATGTGA
                      ____________________________________________________________
consensus             CAGATATCGGCTGGAGGTGATGATGGCAAGCGTGAATGAAAGTTTTACCATTTTATGTGA
 
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rJMSF042K18+          AATTATATGATATATTTTCTTCTGTATGTTCATTTTCTATTGAACACAAGGGAAAAATAG
JMSF042K18-           AATTATATGATATATTTTCTTCTGTATGTTCATTTTCTATTGAACACAAGGGAAAAATAG
                      ____________________________________________________________
consensus             AATTATATGATATATTTTCTTCTGTATGTTCATTTTCTATTGAACACAAGGGAAAAATAG
 
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rJMSF042K18+          GTGTAAAAAGACAAAGTAAGATTTGTGCAANCATGATGTGTACTCTGTTAGTCTGAAAAA
JMSF042K18-           GTGTAAAAAGACAAAGTAAGATTTGTGCAA-CATGATGTGTACTCTGTTAGTCTGAAAAA
                      ____________________________________________________________
consensus             GTGTAAAAAGACAAAGTAAGATTTGTGCAANCATGATGTGTACTCTGTTAGTCTGAAAAA
 
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rJMSF042K18+          GCTACC                                                      
JMSF042K18-           GCTACCTGATAACTTTGATTATAATAAGAATTGTACCCCAATCTTGAGCGAAAAAAAAAA
                      ____________________________________________________________
consensus             GCTACCTGATAACTTTGATTATAATAAGAATTGTACCCCAATCTTGAGCGAAAAAAAAAA