Contig 003838:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS070D11Sequence619003838 (9)ref|XP_004238042.1|1e-54PREDICTED: receptor-like protein kinase HAIKU2 [Solanum lycopersicum]
JMFS103A09Sequence556003838 (9)ref|XP_004238042.1|1e-63PREDICTED: receptor-like protein kinase HAIKU2 [Solanum lycopersicum]
JMFS158B10Sequence515003838 (9)ref|XP_004238042.1|4e-37PREDICTED: receptor-like protein kinase HAIKU2 [Solanum lycopersicum]
JMFS159H01Sequence626003838 (9)ref|XP_004238042.1|3e-64PREDICTED: receptor-like protein kinase HAIKU2 [Solanum lycopersicum]
JMFS159H02Sequence225003838 (9)ref|XP_011074301.1|1e-12PREDICTED: receptor-like protein kinase HAIKU2 [Sesamum indicum]
JMSF015A20Sequence230003838 (9)ref|XP_011074301.1|3e-07PREDICTED: receptor-like protein kinase HAIKU2 [Sesamum indicum]751002863 (3)ref|XP_009769216.1|6e-129PREDICTED: receptor-like protein kinase HAIKU2 [Nicotiana sylvestris]
JMSF025H12Sequence690003838 (9)ref|XP_004238042.1|3e-45PREDICTED: receptor-like protein kinase HAIKU2 [Solanum lycopersicum]773002863 (3)ref|XP_009769216.1|2e-135PREDICTED: receptor-like protein kinase HAIKU2 [Nicotiana sylvestris]
JMSF034I24Sequence661003838 (9)ref|XP_004238042.1|5e-73PREDICTED: receptor-like protein kinase HAIKU2 [Solanum lycopersicum]
JMSF042F16Sequence766003838 (9)ref|XP_004238042.1|7e-55PREDICTED: receptor-like protein kinase HAIKU2 [Solanum lycopersicum]512002863 (3)ref|XP_009769216.1|2e-58PREDICTED: receptor-like protein kinase HAIKU2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF034I24+                                            CCCTTCCAGACTGCAATTCGATAGATA
                      ____________________________________________________________
consensus                                              CCCTTCCAGACTGCAATTCGATAGATA
 
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JMFS103A09+                                         CACTTCCGGGAACAGAGTCTTCTCGAACGG
JMSF034I24+           CAGCCAATTGAAACGAGTAAGCTTCGTAATCACTTCCGGGAACAGAGTCTTCTCGAACGG
JMFS159H01+                   TGAAACGAGTAAGCTTCGTAATCACTCCCGGGAACAGAGTCTTCTCGAACGG
                      ____________________________________________________________
consensus             CAGCCAATTGAAACGAGTAAGCTTCGTAATCACTTCCGGGAACAGAGTCTTCTCGAACGG
 
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JMFS103A09+           ATTATCCCCGATGCTAAGAACCTCCAGCTTCGTAACATTTTCAAGCGAATTCCACGGAAA
JMSF034I24+           ATTATCCCCGATGCTAAGAACCTCCAGCTTCGTAACATTTTCAAGCGAATTCCACGGAAA
JMFS159H01+           ATTATCCCCGATGCTAAGAACCTCCAGCTTCGTAACATTTTCAAGCGAATTCCACGGAAA
JMFS070D11+                                    AGCTTCGTAACATTTTCAAGCGAATTCCACGGAAA
JMSF042F16+                        CTAAGAACCTCCAGCTTCGTAACATTTTCAAGCGAATTCCACGGAAA
                      ____________________________________________________________
consensus             ATTATCCCCGATGCTAAGAACCTCCAGCTTCGTAACATTTTCAAGCGAATTCCACGGAAA
 
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JMFS103A09+           TTTCCCGGAAAATCCGCTGCGATTCATGTACAGATGTGTCAACTCACTGAGCGCCGACAT
JMSF034I24+           TTTCCCGGAAAATCCGCTGCGATTCATGTACAGATGTGTCAACTCACTGAGCGCCGACAT
JMFS159H01+           TTTCCCGGAAAATCCGCTGCGATTCATGTACAGATGTGTCAACTCACTGAGCGCCGACAT
JMSF025H12+                           CTGCGATTCATGTACAGATGTGTCAACTCACTGAGCGCCGACAT
JMFS070D11+           TTTCCCGGAAAATCCGCTGCGATTCATGTACAGATGTGTCAACTCACTGAGCGCCGACAT
JMSF042F16+           TTTCCCGGAAAATCCGCTGCGATTCATGTACAGATGTGTCAACTCACTGAGCGCCGACAT
                      ____________________________________________________________
consensus             TTTCCCGGAAAATCCGCTGCGATTCATGTACAGATGTGTCAACTCACTGAGCGCCGACAT
 
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JMFS103A09+           GTCGGGAATCGACCCGGAGAAAAAATTGTTCCCGAGATCCAAATACTTTAGACCAACGCA
JMSF034I24+           GTCGGGAATCGACCCGGAGAAAAAATTGTTCCCGAGATCCAAATACTTTAGACCAACGCA
JMFS159H01+           GTCGGGAATCGACCCGGAGAAAAAATTGTTCCCGAGATCCAAATACTTTAGACCAACGCA
JMFS158B10+                                AAAATTGTTCCCGAGATCCAAATACTTTAGACCAACGCA
JMSF025H12+           GTCGGGAATCGACCCGGAGAAAAAATTGTTCCCGAGATCCAAATACTTTAGACCAACGCA
JMFS070D11+           GTCGGGAATCGACCCGGAGAAAAAATTGTTCCCGAGATCCAAATACTTTAGACCAACGCA
JMSF042F16+           GTCGGGAATCGACCCGGAGAAAAAATTGTTCCCGAGATCCAAATACTTTAGACCAACGCA
                      ____________________________________________________________
consensus             GTCGGGAATCGACCCGGAGAAAAAATTGTTCCCGAGATCCAAATACTTTAGACCAACGCA
 
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JMFS103A09+           TTTATTCAGTTCGTCGGAGAGCCGGCCGGAAAGTGAGTTGTGCCCGAGAGCCAGCTTCTC
JMSF034I24+           TTTATTCAGTTCGTCGGAGAGCCGGCCGGAAAGTGAGTTGTGCCCGAGAGCCAGCTTCTC
JMFS159H01+           TTTATTCAGTTCGTCGGAGAGCCGGCCGGAAAGTGAGTTGTGCCCGAGAGCCAGCTTCTC
JMFS158B10+           TTTATTCAGTTCGTCGGAGAGCCGGCCGGAAAGTGAGTTGTGCCCGAGAGCCAGCTTCTC
JMSF025H12+           TTTATTCAGTTCGTCGGAGAGCCGGCCGGAAAGTGAGTTGTGCCCGAGAGCCAGCTTCTC
JMFS070D11+           TTTATTCAGTTCGTCGGAGAGCCGGCCGGAAAGTGAGTTGTGCCCGAGAGCCAGCTTCTC
JMSF042F16+           TTTATTCAGTTCGTCGGAGAGCCGGCCGGAAAGTGAGTTGTGCCCGAGAGCCAGCTTCTC
                      ____________________________________________________________
consensus             TTTATTCAGTTCGTCGGAGAGCCGGCCGGAAAGTGAGTTGTGCCCGAGAGCCAGCTTCTC
 
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JMFS103A09+           CAAAGAGCCCAGAGAGCAAATTGAATCAAATGGAATAGACCCGAACAGGCCTTGGCCGGA
JMSF034I24+           CAAAGAGCCCAGAGAGCAAATTGAATCAAATGGAATAGACCCGAACAGGCCTTGGCCGGA
JMFS159H01+           CAAAGAGCCCAGAGAGCAAATTGAATCAAATGGAATAGACCCGAACAGGCCTTGGCCGGA
JMFS158B10+           CAAAGAGCCCAGAGAGCAAATTGAATCAAATGGAATAGACCCGAACAGGCCTTGGCCGGA
JMSF025H12+           CAAAGAGCCCAGAGAGCAAATTGAATCAAATGGAATAGACCCGAACAGGCCTTGGCCGGA
JMFS070D11+           CAAAGAGCCCAGAGAGCAAATTGAATCAAATGGAATAGACCCGAACAGGCCTTGGCCGGA
JMSF042F16+           CAAAGAGCCCAGAGAGCAAATTGAATCAAATGGAATAGACCCGAACAGGCCTTGGCCGGA
                      ____________________________________________________________
consensus             CAAAGAGCCCAGAGAGCAAATTGAATCAAATGGAATAGACCCGAACAGGCCTTGGCCGGA
 
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JMFS103A09+           AAGCTCGATCTCTCTGACTGAACCATCGGAGTTGCAGGTAATTCCGGCGAAAGTACAGAG
JMSF034I24+           AAGCTCGATCTCTCTGACTGAACCATCGGAGTTGCAGGTAATTCCGGCGAAAGTACAGAG
JMFS159H02+              CTCGATCTCTCTGACTGAACCATCGGAGTTGCAGGTAATTCCGGCGAAAGTACAGAG
JMFS159H01+           AAGCTCGATCTCTCTGACTGAACCATCGGAGTTGCAGGTAATTCCGGCGAAAGTACAGAG
JMFS158B10+           AAGCTCGATCTCTCTGACTGAACCATCGGAGTTGCAGGTAATTCCGGCGAAAGTACAGAG
JMSF025H12+           AAGCTCGATCTCTCTGACTGAACCATCGGAGTTGCAGGTAATTCCGGCGAAAGTACAGAG
JMSF015A20+                                               GGTAATTCCGGCGAAAGTACAGAG
JMFS070D11+           AAGCTCGATCTCTCTGACTGAACCATCGGAGTTGCAGGTAATTCCGGCGAAAGTACAGAG
JMSF042F16+           AAGCTCGATCTCTCTGACTGAACCATCGGAGTTGCAGGTAATTCCGGCGAAAGTACAGAG
                      ____________________________________________________________
consensus             AAGCTCGATCTCTCTGACTGAACCATCGGAGTTGCAGGTAATTCCGGCGAAAGTACAGAG
 
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JMFS103A09+           CGGGGTACTAGAATTCCAGTTATCGAACACGCTGTTTCCGGCGTTCTGGAAGGAGGCCTT
JMSF034I24+           CGGGGTACTAGAATTCCAGTTATCGAACACGCTGTTTCCGGCGTTCTGGAAGGAGGCCTT
JMFS159H02+           CGGGGTACTAGAATTCCAGTTATCGAACACCCTGTTTCCGGCGTTCTGGAAGGAGGCCTT
JMFS159H01+           CGGGGTACTAGAATTCCAGTTATCGAACACCCCGTTTCCGGCGTTCTGGAAGGAGGCCTT
JMFS158B10+           CGGGGTACTAGAATTCCAGTTATCGAACACGCTGTTTCCGGCGTTCTGGAAGGAGGCCTT
JMSF025H12+           CGGGGTACTAGAATTCCAGTTATCGAACACGCTGTTTCCGGCGTTCTGGAAGGAGGCCTT
JMSF015A20+           CGGGGTACTAGAATTCCAGTTATCGAACACGCTGTTTCCGGCGTTCTGGAAGGAGGCCTT
JMFS070D11+           CGGGGTACTAGAATTCCAGTTATCGAACACGCTGTTTCCGGCGTTCTGGAAGGAGGCCTT
JMSF042F16+           CGGGGTACTAGAATTCCAGTTATCGAACACGCTGTTTCCGGCGTTCTGGAAGGAGGCCTT
                      ____________________________________________________________
consensus             CGGGGTACTAGAATTCCAGTTATCGAACACGCTGTTTCCGGCGTTCTGGAAGGAGGCCTT
 
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JMFS103A09+           TAACGTTAGAAGCGATTGGAGCTCGTCGGAGCTGGCAACGAAGAAGAATAAGGTA-AAGA
JMSF034I24+           TAACGTTAGAAGCGATTGGAGCTCGTCGGAGCTGGCAACGAAGAAGAATAAGGTA-AAGA
JMFS159H02+           TAACGTTAGAAGCGATTGGAGCTGGTCGGAGCTGGCAACGAAGAAGAATAAGGTA-AAGA
JMFS159H01+           TAACGTTAGAAGCGATTGGAGCTCGTCGGAGCTGGCAACGAAGAAGAATAAGGTA-AAGA
JMFS158B10+           TAACGTTAGAAGCGATTGGAGCTCGTCGGAGCTGGCAACGAAGAAGAATAAGGCACAAGA
JMSF025H12+           TAACGTTAGAAGCGATTGGAGCTCGTCGGAGCTGGCAACGAAGAAGAATAAGGTA-AAGA
JMSF015A20+           TAACGTTAGAAGCGATTGGAGCTCGTCGGAGCTGGCAACGAAGAAGAATAAGGTA-AAGA
JMFS070D11+           TAACGTTAGAAGCGATTGGAGCTCGTCGGAGCTGGCAACGAAGAAGAATAAGGTA-AAGA
JMSF042F16+           TAACGTTAGAAGCGATTGGAGCTCGTCGGAGCTGGCAAAGAAGAAGAATAAGGTA-AAGA
                      ____________________________________________________________
consensus             TAACGTTAGAAGCGATTGGAGCTCGTCGGAGCTGGCAACGAAGAAGAATAAGGTA-AAGA
 
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JMFS103A09+           AAGATAGGAGAGAAAGATTTGGCCGGAAAAGTTCACCCGCCGCCATC             
JMSF034I24+           AAGATAGGAGAGAAAGATTTGGCCGGAAAAGTTCACCCGCCGCCATCTCTGACGGTTTAG
JMFS159H02+           AAGATAGGAGAGAAAGATTTGGCCGGAAAAGTTCACCCGCCGCCATCTC           
JMFS159H01+           AAGATAGGAGAGAAAGATTTGGCCGGAAAAGTTCACCCGCCGCCATCTCTGACGGTTTAG
JMFS158B10+           AAGATAGGAGAGAAAGATTTGGCCGGAAAAGTTCACCCGCCGCCATCTCTGACGGTTTAG
JMSF025H12+           AAGATAGGAGAGAAAGATTTGGCCGGAAAAGTTCACCCGCCGCCATCTCTGACGGTTTAG
JMSF015A20+           AAGATAGGAGAGAAAGATTTGGCCGGAAAAGTTCACCCGCCGCCATCTCTGACGGTTTAG
JMFS070D11+           AAGATAGGAGAGAAAGATTTGGCCGGAAAAGTTCACCCGCCGCCATCTCTGACGGTTTAG
JMSF042F16+           AAGATAGGAGAGAAAGATTTGGCCGGAAAAGTTCACCCGCCGCCATCTCTGACGGTTTAG
                      ____________________________________________________________
consensus             AAGATAGGAGAGAAAGATTTGGCCGGAAAAGTTCACCCGCCGCCATCTCTGACGGTTTAG
 
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JMSF034I24+           TTTGACGAGTAGAGAAAACTTGGTCTTCGGAGT                           
JMFS159H01+           TTTCACCAGTACAGAAAACTTGGTCTTCGGAGTGT                         
JMFS158B10+           TTTGACGAGTAGAGAAAACTTGGTCTTCGGAGTGTGGAAAAGACGGGCTAGAAGAAACCC
JMSF025H12+           TTTGACGAGTAGAGAAAACTTGGTCTTCGGAGTGTGGAAAAGACGGGCTAGAAGAAACCC
JMSF015A20+           TTTGACGAGTAGAGAAAACTTGG                                     
JMFS070D11+           TTTGACGAGTAGAGAAAACTTGGTCTTCGGAGTGTGGAAAAGACGGGCTAGAAGAAACCC
JMSF042F16+           TTTGACGAGTAGAGAAAACTTGGTCTTCGGAGTGTGGAAAAGACGGGCTAGAAGAAACCC
                      ____________________________________________________________
consensus             TTTGACGAGTAGAGAAAACTTGGTCTTCGGAGTGTGGAAAAGACGGGCTAGAAGAAACCC
 
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JMFS158B10+           AAATTGAGAACGGTGCAGATCATACTCCCATTTCCTTTCACTTTCCTCAGTAATTT    
JMSF025H12+           AAATTGAGAACGGTGCAGATCATACTCCCATTTCCTTTCACTTTCCTCAGTAATTTTCAT
JMFS070D11+           AAATTGAGAACGGTGCAGATCATACTCCCATTTCCTTTCACTTTC               
JMSF042F16+           AAATTGAGAACGGTGCAGATCATACTCCCATTTCCTTTCACTTTCCTCAGTAATTTTCAT
                      ____________________________________________________________
consensus             AAATTGAGAACGGTGCAGATCATACTCCCATTTCCTTTCACTTTCCTCAGTAATTTTCAT
 
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JMSF025H12+           GTGAAGAAATCCCATGGCTGCTGTCGGCCGGTGGTTGAGAAGACTAGAAGAGAAAACCAA
JMSF042F16+           GTGAAGAAATCCCATGGCTGCTGTCGGCCGGTGGTTGAGAAGACTAGAAGAGAAAACCAA
                      ____________________________________________________________
consensus             GTGAAGAAATCCCATGGCTGCTGTCGGCCGGTGGTTGAGAAGACTAGAAGAGAAAACCAA
 
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JMSF025H12+           GTTTGTTCACGGAAGCTTCAAACAAAACCGCCGACTTTGACCCTTT              
JMSF042F16+           GTTTGTTCACGGAAGCTTCAAACAAAACCGCCGACTTTGACCCTTTGAACCAGCTACGTC
                      ____________________________________________________________
consensus             GTTTGTTCACGGAAGCTTCAAACAAAACCGCCGACTTTGACCCTTTGAACCAGCTACGTC