Contig 003826:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014N06-                                       ACATCAACATTAGCATAGGCCAACGAAAAAA
rJMFF022N22-             AAATTAATCACTTCACTTCAACTTCAACATCAACATTAGCATAGGCCAACGAAAAAA
                      ____________________________________________________________
consensus                AAATTAATCACTTCACTTCAACTTCAACATCAACATTAGCATAGGCCAACGAAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014N06-          AAAANGGGGGGGAAATCTACCTATTTACATGATTTGAGTCTAGAAAAAAGGAAAATATTC
rJMFF022N22-          AAAA-GGGGGGGAAATCTACCTATTTACATGATTTGAGTCTANAAAAAAGGAAAATATTC
                      ____________________________________________________________
consensus             AAAANGGGGGGGAAATCTACCTATTTACATGATTTGAGTCTAGAAAAAAGGAAAATATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014N06-          AACACCGAATACAACACTCNCCATCTAATCTAANAGTTAATAAAAGGCANAAGCAATANG
rJMFF022N22-          AACACCGAATACAACACTCACCATCTAATCTAANAGTTAATAAAAGGCANAAGCAATATG
                      ____________________________________________________________
consensus             AACACCGAATACAACACTCACCATCTAATCTAANAGTTAATAAAAGGCANAAGCAATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014N06-          GGAAATATTTTTTTTTCTTTTTGCAAAAAAAGTTGANATCGAATTACCGTACNCTTGTAC
rJMFF022N22-          GGAAATATTTTTTTTTCTTTTTGCAAAAAAAGTTGANATCGAATTACCGNACTCTTGTAC
                      ____________________________________________________________
consensus             GGAAATATTTTTTTTTCTTTTTGCAAAAAAAGTTGANATCGAATTACCGTACTCTTGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014N06-          NANAACTTATCANCATTCTTTGATACNATCAGNCCGGNGCTNGGCGATNCNCNGGGGGGC
rJMFF022N22-          NANAACTTATCATCATTCTTTGATACNATCAGNCCGGNGCTTGGCGATACTCTGGNGGGC
rJMSF040M19-             AACTTATCATCATTCTTTGATACGATCAGTCCGGTGCTTGGCGATACTCTGGTGGGC
                      ____________________________________________________________
consensus             NANAACTTATCATCATTCTTTGATACGATCAGTCCGGTGCTTGGCGATACTCTGGTGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014N06-          TTTGCTTCCNCCGCCNTTTCCNCTACTANAGCTNCCGGATTCCTTCTTCGGTNGNGAANA
rJMFF022N22-          TTTGCTTCCACCGCCATTTCCACTACTAAAGCTACCGGATTCCTTCTTCGGTTGNGAAAA
rJMSF040M19-          TTTGCTTCCACCGCCATTTCCACTACTAGAGCTACCGGATTCCTTCTTCGGTTGTGAAGA
                      ____________________________________________________________
consensus             TTTGCTTCCACCGCCATTTCCACTACTAGAGCTACCGGATTCCTTCTTCGGTTGTGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014N06-          AAAAAATAANGGGAANCCAAAAACNCCANACTTANAANANCCCCNGAGNGAACAAACNGG
rJMFF022N22-          AAAAAATAAAGGGAATCCAAAAACNCCAAACTTAAAAAANCCCCTGAGNGAACAAACAGG
rJMSF040M19-          AGAAAATAAAGGGAATCCAAAAACACCAGACTTAGAAGAGCCCCTGAGTGAACAAACAGG
                      ____________________________________________________________
consensus             AAAAAATAAAGGGAATCCAAAAACACCAGACTTAGAAGAGCCCCTGAGTGAACAAACAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014N06-          AACGTTTANAACCGGAGNGACNCGAACGTTTGCCGAGTAANACCGC              
rJMFF022N22-          AACGTTTAAAACCGGAGNGACNCNAACGTTTGCCGAGTAAAACCGCTCCATTCCTCTGNG
rJMSF040M19-          AACGTTTAGAACCGGAGTGACACGAACGTTTGCCGAGTAAGACCGCTCCATTCCTCTGTG
                      ____________________________________________________________
consensus             AACGTTTAGAACCGGAGTGACACGAACGTTTGCCGAGTAAGACCGCTCCATTCCTCTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF022N22-          CTTGTATCTGGGACCACCATTGAAACTGCTTGGACTACTTGAGCTTCTCTCCAAGCTGNG
rJMSF040M19-          CTTGTATCTGGGACCACCATTGAAACTGCTTGGACTACTTGAGCTTCTCTCCAAGCTGTG
                      ____________________________________________________________
consensus             CTTGTATCTGGGACCACCATTGAAACTGCTTGGACTACTTGAGCTTCTCTCCAAGCTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF022N22-          AAAAACNATTTTCCCGGATGAGTTCATGCGNGGACTATCGACAGANACACCACGGAGT  
rJMSF040M19-          AAAAACGATTTTCCCGGATGAGTTCATGCGTGGACTATCGACAGAGACACCACGGAGTGT
                      ____________________________________________________________
consensus             AAAAACGATTTTCCCGGATGAGTTCATGCGTGGACTATCGACAGAGACACCACGGAGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M19-          CGTGGAGGTAGTAGCTTCTGCTGCTCTCCGCATTGGGCTTCGGCCCACTCGCGAGGCGGT
                      ____________________________________________________________
consensus             CGTGGAGGTAGTAGCTTCTGCTGCTCTCCGCATTGGGCTTCGGCCCACTCGCGAGGCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M19-          GGGATTCTCGGATGATAACGCCCTCGGCTTCACCACACGAACTCGAGGAGGATTGATATT
                      ____________________________________________________________
consensus             GGGATTCTCGGATGATAACGCCCTCGGCTTCACCACACGAACTCGAGGAGGATTGATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M19-          TTGACTTGCACTGCGAGTGTGACCATTTGGTTTCTCGGAATCGAGGGATAGACGGGGGAG
                      ____________________________________________________________
consensus             TTGACTTGCACTGCGAGTGTGACCATTTGGTTTCTCGGAATCGAGGGATAGACGGGGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M19-          ATCGTCGTGCTCGTGCCCGGAAGAAGATGAAGACAGTGATAACCTGGAGGAAACCGATAC
                      ____________________________________________________________
consensus             ATCGTCGTGCTCGTGCCCGGAAGAAGATGAAGACAGTGATAACCTGGAGGAAACCGATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M19-          CGACTCGTTGTCGGAGTCCTTTAGCAAAGGCTGGCTGAGCGACGCGTCAATAGATGTGTG
                      ____________________________________________________________
consensus             CGACTCGTTGTCGGAGTCCTTTAGCAAAGGCTGGCTGAGCGACGCGTCAATAGATGTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M19-          CAGAGATTTTGAACTACGGTGTAGGAAATTTTTCAGAGATTTATGTCCGTTGTTGCCCTG
                      ____________________________________________________________
consensus             CAGAGATTTTGAACTACGGTGTAGGAAATTTTTCAGAGATTTATGTCCGTTGTTGCCCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M19-          CAAGGAGGAAGAAGATGTCTTCTGAGTATCCTGCTTTGCATTGCTGTTCTGGTAGAGTTT
                      ____________________________________________________________
consensus             CAAGGAGGAAGAAGATGTCTTCTGAGTATCCTGCTTTGCATTGCTGTTCTGGTAGAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M19-          CTTCAGTCCTAGAAGCTCCTTCCACCGACTGGAACACCTAGGTGCCTTTGGAGAGAAGAG
JMSF040M19+                                  ACCGACTGGAACACCTAGGTGCCTTTGGAGAGAAGAG
                      ____________________________________________________________
consensus             CTTCAGTCCTAGAAGCTCCTTCCACCGACTGGAACACCTAGGTGCCTTTGGAGAGAAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040M19-          GTATGGATCCGTACCGCAAATCTCATTTCTGA                            
JMSF040M19+           GTATGGATCCGTACCGCAAATCTCATTTCTGATTCGCAGTTTGGGCGTATCCGGCGATCT
                      ____________________________________________________________
consensus             GTATGGATCCGTACCGCAAATCTCATTTCTGATTCGCAGTTTGGGCGTATCCGGCGATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022N22+                       CGTTGGCATGGCTGCTGACGTCGCCACTGGGCGGATCATCGAGAGCTG
JMSF014N06+                                                        GATCATCGAGAGCTG
JMSF040M19+           AACCTCCATAGACGTTGGCATGGCTGCTGACGTCGCCACTGGGCGGATCATCGAGAGCTG
                      ____________________________________________________________
consensus             AACCTCCATAGACGTTGGCATGGCTGCTGACGTCGCCACTGGGCGGATCATCGAGAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022N22+           TAGCGGCACGAGCTTTCCGTCAGAGAAGAGCTCGTCCGCCGGAAGCATAATGGCCGGATC
JMSF014N06+           TAGCGGCACGAGCTTTCCGTCAGAGAAGAGCTCGTCCGCCGGAAGCATAATGGCCGGATC
JMSF040M19+           TAGCGGCACGAGCTTTCCGTCAGAGAAGAGCTCGTCCGCCGGAAGCATAATGGCCGGATC
                      ____________________________________________________________
consensus             TAGCGGCACGAGCTTTCCGTCAGAGAAGAGCTCGTCCGCCGGAAGCATAATGGCCGGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022N22+           GTCGAGGCGGGACTCGAAATCTCCTACATCTTTGGCGGGATCTGAGTCCTCGAGCTTATC
JMSF014N06+           GTCGAGGCGGAACTCGAAATCTCCTACATCTTTGGCGGGATCTGAGTCCTCGAGCTTATC
JMSF040M19+           GTCGAGGCGGAACTCGAAATCTCCTACATCTTTGGCGGGATCTGAGTCCTCGAGCTTATC
                      ____________________________________________________________
consensus             GTCGAGGCGGAACTCGAAATCTCCTACATCTTTGGCGGGATCTGAGTCCTCGAGCTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022N22+           GTCAGCGGCACACTTGTCCGGCAACAGAGAAGAATGCTTAGGTCCGGCAGTGTTTGTGGA
JMSF014N06+           GTCAGCGGCACACTTGTCCGGCAACAGAGAAGAATGCTTAGGTCCGGCAGTGTTTGTGGA
JMSF040M19+           GTCAGCGGCACACTTGTCCGGCAACAGAGAAGAATGCTTAGGTCCGGCAGTGTTTGTGGA
                      ____________________________________________________________
consensus             GTCAGCGGCACACTTGTCCGGCAACAGAGAAGAATGCTTAGGTCCGGCAGTGTTTGTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022N22+           GTCCGAGTCGGCCGGAAACTCCCGACTGTAGGAAACTCGCGGACTCAACCAACCATAGGA
JMSF014N06+           GTCCGAGTCGGCCGGAAACTCCCGACTGTAGGAAACTCGCGGACTCAACCAACCATAGGA
JMSF040M19+           GTCCGAGTCGGCCGGAAACTCCCGACTGTAGGAAACTCGCGGACTCAACCAACCATAGGA
                      ____________________________________________________________
consensus             GTCCGAGTCGGCCGGAAACTCCCGACTGTAGGAAACTCGCGGACTCAACCAACCATAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022N22+           CTGGTACTTAGGCGGAGGACAGTCGAGAAAGGATTCGGGCGACATTCCAATGGTGTTGAC
JMSF014N06+           CTGGTACTTAGGCGGAGGACAGTCGAGAAAGGATTCGGGCGACATTCCAATGGTGTTGAC
JMSF040M19+           CTGGTACTTAGGCGGAGGACAGTCGAGAAAGGATTCGGGCGACATTCCAATGGTGTTGAC
                      ____________________________________________________________
consensus             CTGGTACTTAGGCGGAGGACAGTCGAGAAAGGATTCGGGCGACATTCCAATGGTGTTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022N22+           GCAGGCGGACGCCATGGCTGGCTCTCATTCAACTTCTTGTTATCGGCTGAAAAGCAAGAC
JMSF014N06+           GCAGGCGGACGCCATGGCTGGCTCTCATTCAACTTCTTGTTATCGGCTGAAAAGCAAGAC
JMSF040M19+           GCAGGCGGACGCCATGGCTGGCTCTCATTCAACTTCTTGTTATCGGCTGAAAAGCAAGAC
                      ____________________________________________________________
consensus             GCAGGCGGACGCCATGGCTGGCTCTCATTCAACTTCTTGTTATCGGCTGAAAAGCAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022N22+           AATGAATGGTGTAGACTATAATAAACAAGATATGAAAGGGAATCTCAATCACCTTGAAAA
JMSF014N06+           AATGAATGGTGTAGACTATAATAAACAAGATATGAAAGGGAATCTCAATCACCTTGAAAA
JMSF040M19+           AATGAATGGTGTAGACTATAATAAACAAGATATGAAAGGGAATCTCAATCACCTTGAAAA
                      ____________________________________________________________
consensus             AATGAATGGTGTAGACTATAATAAACAAGATATGAAAGGGAATCTCAATCACCTTGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022N22+           TGCAGAGATATATATTATAAATATAGTATGTGCAGT                        
JMSF014N06+           TGCAGAGATATATATTATAAATATAGTATGTGCAGTATTGTCACGGC             
JMSF040M19+           TGCAGAGATATATATTATAAATATAGTATGTGCAGTATTGTCACGGCGAGCTAGCCGCCC
                      ____________________________________________________________
consensus             TGCAGAGATATATATTATAAATATAGTATGTGCAGTATTGTCACGGCGAGCTAGCCGCCC