Contig 003815:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038N11Sequence622003815 (2)ref|XP_009758805.1|2e-91PREDICTED: telomere repeat-binding factor 1-like [Nicotiana sylvestris] ref|XP_0764005482 (2)
JMSF039K22Sequence571003815 (2)ref|XP_009758805.1|4e-72PREDICTED: telomere repeat-binding factor 1-like [Nicotiana sylvestris] ref|XP_0858005482 (2)ref|XP_004250736.1|1e-23PREDICTED: telomere repeat-binding factor 1 [Solanum lycopersicum] ref|XP_010313

Alignment

This contig is upended


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JMFF038N11+                        GCAGAAAGTAGCCTTTTAAAATTGGGAGGTGCCCAGTATTGATCCTC
                      ____________________________________________________________
consensus                          GCAGAAAGTAGCCTTTTAAAATTGGGAGGTGCCCAGTATTGATCCTC
 
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JMFF038N11+           TATGTATGCAGCAATAGTTTTCTTGTTTGATCCACCAGGCTCCTTCAAGTTGTTTATAGC
JMSF039K22+                                        ATCCACCAGGCTCCTTCAAGTTGTTTATAGC
                      ____________________________________________________________
consensus             TATGTATGCAGCAATAGTTTTCTTGTTTGATCCACCAGGCTCCTTCAAGTTGTTTATAGC
 
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JMFF038N11+           ATCCATAACAAGATTGTCCAACCGTATGATGGATCTCTTTGAGCCACCATTCTGTGGAGA
JMSF039K22+           ATCCATAACAAGATTGTCCAACCGTATGATGGATCTCTTTGAGCCACCATTCTGTGGAGA
                      ____________________________________________________________
consensus             ATCCATAACAAGATTGTCCAACCGTATGATGGATCTCTTTGAGCCACCATTCTGTGGAGA
 
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JMFF038N11+           ACCACTAGAAGTTTCAACTCTCTTGCCTTCACTACTTTCCTCCTCGCTTTGAACTACATT
JMSF039K22+           ACCACTAGAAGTTTCAACTCTCTTGCCTTCACTACTTTCCTCCTCGCTTTGAACTACATT
                      ____________________________________________________________
consensus             ACCACTAGAAGTTTCAACTCTCTTGCCTTCACTACTTTCCTCCTCGCTTTGAACTACATT
 
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JMFF038N11+           TGTAAGAGCCAATGAGTTCTCATCCTGTTTAGAGGTTCGGTGCATCCTTTTAACTGCTAA
JMSF039K22+           TGTAAGAGCCAATGAGTTCTCATCCTGTTTAGAGGTTCGGTGCATCCTTTTAACTGCTAA
                      ____________________________________________________________
consensus             TGTAAGAGCCAATGAGTTCTCATCCTGTTTAGAGGTTCGGTGCATCCTTTTAACTGCTAA
 
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JMFF038N11+           TCTTGACTTCTCTCGAGATCCCCAGCCATTTGCCATCACAGTCATGTTTCTCCACTTGTC
JMSF039K22+           TCTTGACTTCTCTCGAGATCCCCAGCCATTTGCCATCACAGTCATGTTTCTCCACTTGTC
                      ____________________________________________________________
consensus             TCTTGACTTCTCTCGAGATCCCCAGCCATTTGCCATCACAGTCATGTTTCTCCACTTGTC
 
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JMFF038N11+           CTTGAGATCTACATTTGAACGAAGATACAATACTCCACTATATTCTGGATCCTTAAGGAT
JMSF039K22+           CTTGAGATCTACATTTGAACGAAGATACAATACTCCACTATATTCTGGATCCTTAAGGAT
                      ____________________________________________________________
consensus             CTTGAGATCTACATTTGAACGAAGATACAATACTCCACTATATTCTGGATCCTTAAGGAT
 
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JMFF038N11+           CGTGCGCCATTTGCCTGGTCCATGCTTGAGTACTCCAGCTTTAAGAGCAGCTTCTTCTTC
JMSF039K22+           CGTGCGCCATTTGCCTGGTCCATGCTTGAGTACTCCAGCTTTAAGAGCAGCTTCTTCTTC
                      ____________________________________________________________
consensus             CGTGCGCCATTTGCCTGGTCCATGCTTGAGTACTCCAGCTTTAAGAGCAGCTTCTTCTTC
 
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JMFF038N11+           AGAAGTCCATTTTTGTTTAGGTGCACCCATTAAAGGTTTTTATGGAAAGAGGTC      
JMSF039K22+           AGAAGTCCATTTTTGTTTAGGTGCACCCATTAAAGGTTTTTATGGAAAGAGGTCTTAAGG
                      ____________________________________________________________
consensus             AGAAGTCCATTTTTGTTTAGGTGCACCCATTAAAGGTTTTTATGGAAAGAGGTCTTAAGG
 
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JMSF039K22+           GAGACGAAGGACAAAGATAATTAGAAATGGGAGAGTTATCCAGAAAAGTCGTTCAGATGT
                      ____________________________________________________________
consensus             GAGACGAAGGACAAAGATAATTAGAAATGGGAGAGTTATCCAGAAAAGTCGTTCAGATGT
 
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JMSF039K22+           AGCGATTGATGCTCAGAGCTTTCAGAATTTGGACGTGCCCTGTCTGAACTCTGAAGTCTC
                      ____________________________________________________________
consensus             AGCGATTGATGCTCAGAGCTTTCAGAATTTGGACGTGCCCTGTCTGAACTCTGAAGTCTC