Contig 003814:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF045A17-                GGAGTGTTATTACATTAAAGAACAAGGTTAAACTTAGCTCTTATCTCCATAGTC
rJMSF039K11-                GGAGTGTTATTACATTAAAGAACAAGGTTAAACTTAGCTCTTATCTCCATAGTC
                      ____________________________________________________________
consensus                   GGAGTGTTATTACATTAAAGAACAAGGTTAAACTTAGCTCTTATCTCCATAGTC
 
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rJMSF045A17-          GTTGGCAATCCATAACCTTTCAATACGAGATTTACCATCCAATTTACATTTAAAAAATAG
rJMSF039K11-          GTTGGCAATCCATAACCTTTCAATACGAGATTTACCATCCAATTTACATTTAAAAAATAG
                      ____________________________________________________________
consensus             GTTGGCAATCCATAACCTTTCAATACGAGATTTACCATCCAATTTACATTTAAAAAATAG
 
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rJMSF045A17-          ACGGTAAAAATCAGCTACATTAATCCTCTTAAAATTTGGTGGGGTCTGAGGAGTGATAAG
rJMSF039K11-          ACGGTAAAAATCAGCTACATTAATCCTCTTAAAATTTGGTGGGGTCTGAGGAGTGATAAG
                      ____________________________________________________________
consensus             ACGGTAAAAATCAGCTACATTAATCCTCTTAAAATTTGGTGGGGTCTGAGGAGTGATAAG
 
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rJMSF045A17-          ACTGGTAGCTGGACCTAATTCAGCATTCATCTTTGGGCTGTGAAATGTTGCAATGGATAC
rJMSF039K11-          ACTGGTAGCTGGACCTAATTCAGCATTCATCTTTGGGCTGTGAAATGTTGCAATGGATAC
                      ____________________________________________________________
consensus             ACTGGTAGCTGGACCTAATTCAGCATTCATCTTTGGGCTGTGAAATGTTGCAATGGATAC
 
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rJMSF045A17-          CCTCTCTTTGTCTGGACTTACTACTCCTCTATGCTCGATACTACGATAAATTCCATTGGT
rJMSF039K11-          CCTCTCTTTGTCTGGACTTACTACTCCTCTATGCTCGATACTACGATAAATTCCATTGGT
                      ____________________________________________________________
consensus             CCTCTCTTTGTCTGGACTTACTACTCCTCTATGCTCGATACTACGATAAATTCCATTGGT
 
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rJMSF045A17-          AAAGATCTCCACAGAATCTCCCACATTAACAATGAAGGCATTAGGGATTGGCGCAATAGG
rJMSF039K11-          AAAGATCTCCACAGAATCTCCCACATTAACAATGAAGGCATTAGGGATTGGCGCAATAGG
                      ____________________________________________________________
consensus             AAAGATCTCCACAGAATCTCCCACATTAACAATGAAGGCATTAGGGATTGGCGCAATAGG
 
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rJMSF045A17-          AATCCAAACTCCATCCTTTTTTATCTCCAGACCCTTTGTTTCATTTGCTTGGAGGAGGAT
rJMSF039K11-          AATCCAAACTCCATCCTTTTTTATCTCCAGACCCTTTGTTTCATTTGCTTGGAGGAGGAT
                      ____________________________________________________________
consensus             AATCCAAACTCCATCCTTTTTTATCTCCAGACCCTTTGTTTCATTTGCTTGGAGGAGGAT
 
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rJMSF045A17-          AGTTAAACCACCAGGATCGGAGTGAGGGCTGAGACCCATCACAAGCTCTGGACGGGGACA
rJMSF039K11-          AGTTAAACCACCAGGATCGGAGTGAGGGCTGAGACCCATCACAAGCTCTGGACGGGGACA
                      ____________________________________________________________
consensus             AGTTAAACCACCAGGATCGGAGTGAGGGCTGAGACCCATCACAAGCTCTGGACGGGGACA
 
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rJMSF045A17-          TGGTGGATAATAGTTCATCCTCATTGATTGCATTCCTTCTTCAAAAAGCATTCGCATCTC
rJMSF039K11-          TGGTGGATAATAGTTCATCCTCATTGATTGCATTCCTTCTTCAAAAAGCATTCGCATCTC
JMSF039K11+                                                       AAAGCATTCGCATCTC
                      ____________________________________________________________
consensus             TGGTGGATAATAGTTCATCCTCATTGATTGCATTCCTTCTTCAAAAAGCATTCGCATCTC
 
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rJMSF045A17-          TTCAGCTTTTATTCCCAGTTTCTTTGCCAAAAGGTTTAGGACCTTCATGGCAACCTTGTG
rJMSF039K11-          TTCAGCTTTTATTCCCAGTTTCTTTGCCAAAAGGTTTAGGACCTTCATGGCAACCTTGTG
JMSF045A17+                                CTTTGCCAAAAGGTTTAGGACCTTCATGGCAACCTTGTG
JMSF039K11+           TTCAGCTTTTATTCCCAGTTTCTTTGCCAAAAGGTTTAGGACCTTCATGGCAACCTTGTG
                      ____________________________________________________________
consensus             TTCAGCTTTTATTCCCAGTTTCTTTGCCAAAAGGTTTAGGACCTTCATGGCAACCTTGTG
 
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rJMSF045A17-          TACTTCAACTGAGTACGCTTCTATAGTATCCCTGAAAGGTTCTGGCAGCTTTGGAAAGAG
rJMSF039K11-          TACTTCAACTGAGTACGCTTCTATAGTATCCCTGAAAGGTTCTGGCAGCTTTGGAAAGAG
JMSF045A17+           TACTTCAACTGAGTACGCTTCTATAGTATCCCTGAAAGGTTCTGGCAGCTTTGGAAAGAG
JMSF039K11+           TACTTCAACTGAGTACGCTTCTATAGTATCCCTGAAAGGTTCTGGCAGCTTTGGAAAGAG
                      ____________________________________________________________
consensus             TACTTCAACTGAGTACGCTTCTATAGTATCCCTGAAAGGTTCTGGCAGCTTTGGAAAGAG
 
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rJMSF045A17-          TTTAGGTGATCTTATATGGGTTGGTAGGGTTTTAATGTAAAACATGTCTGCCCAGTCCAG
rJMSF039K11-          TTTAGGTGATCTTATATGGGTTGGTAGGGTTTTAATGTAAAACATGTCTGCCCAGTCCAG
JMSF045A17+           TTTAGGTGATCTTATATGGGTTGGTAGGGTTTTAATGTAAAACATGTCTGCCCAGTCCAG
JMSF016I15+                                 GGTAGGGTTTTAATGTAAAACATGTCTGCCCAGTCCAG
JMSF039K11+           TTTAGGTGATCTTATATGGGTTGGTAGGGTTTTAATGTAAAACATGTCTGCCCAGTCCAG
                      ____________________________________________________________
consensus             TTTAGGTGATCTTATATGGGTTGGTAGGGTTTTAATGTAAAACATGTCTGCCCAGTCCAG
 
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rJMSF045A17-          CTTCTGCTCTTCAGACACAATAAAGTGCTGACCAAACCC                     
rJMSF039K11-          CTTCTGCTCTTCAGACACAATAAAGTGCTGACCAAACCCTTCTTTCTCCCCTTCCGCTAT
JMSF045A17+           CTTCTGCTCTTCAGACACAATAAAGTGCTGACCAAACCCTTCTTTCTCCCCTTCCGCTAT
JMSF016I15+           CTTCTGCTCTTCAGACACAATAAAGTGCTGACCAAACCCTTCTTTCTCCCCTTCCGCTAT
JMSF039K11+           CTTCTGCTCTTCAGACACAATAAAGTGCTGACCAAACCCTTCTTTCTCCCCTTCCGCTAT
                      ____________________________________________________________
consensus             CTTCTGCTCTTCAGACACAATAAAGTGCTGACCAAACCCTTCTTTCTCCCCTTCCGCTAT
 
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rJMSF039K11-          CCCATACTTGTTCTCCTTCTCTTCCAATGGCAGATTGAAGAAGCCTAGGACCTCACGTTT
JMSF045A17+           CCCATACTTGTTCTCCTTCTCTTCCAATGGCAGATTGAAGAAGCCTAGGACCTCACGTTT
JMSF016I15+           CCCATACTTGTTCTCCTTCTCTTCCAATGGCAGATTGAAGAAGCCTAGGACCTCACGTTT
JMSF039K11+           CCCATACTTGTTCTCCTTCTCTTCCAATGGCAGATTGAAGAAGCCTAGGACCTCACGTTT
                      ____________________________________________________________
consensus             CCCATACTTGTTCTCCTTCTCTTCCAATGGCAGATTGAAGAAGCCTAGGACCTCACGTTT
 
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rJMSF039K11-          CGCCTTCTCCACCAGTGAAGAGCTCACTCCATGATTTATCAGC                 
JMSF045A17+           CGCCTTCTCCACCAGTGAAGAGCTCACTCCATGATTTATCAGCTGAAAGAAACCCCAATC
JMSF016I15+           CGCCTTCTCCACCAGTGAAGAGCTCACTCCATGATTTATCAGCTGAAAGAAACCCCAATC
JMSF039K11+           CGCCTTCTCCACCAGTGAAGAGCTCACTCCATGATTTATCAGCTGAAAGAAACCCCAATC
                      ____________________________________________________________
consensus             CGCCTTCTCCACCAGTGAAGAGCTCACTCCATGATTTATCAGCTGAAAGAAACCCCAATC
 
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JMSF045A17+           CTTACAGGCACAGTGCAGCTTCTGAAGCTCCGGCGACTGCCCGGCAGATTCCTCAGACAG
JMSF016I15+           CTTACAGGCACAGTGCAGCTTATGAAGCTCCGGCGACTGCCCGGCAGATTCCTCAGACAG
JMSF039K11+           CTTACAGGCACAGTGCAGCTTCTGAAGCTCCGGCGACTGCCCGGCAGATTCCTCAGACAG
                      ____________________________________________________________
consensus             CTTACAGGCACAGTGCAGCTTCTGAAGCTCCGGCGACTGCCCGGCAGATTCCTCAGACAG
 
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JMSF045A17+           TAACTTTTGCATGTCGATCACCGGGACATCTGTGGCAGAACAAGTTTTCTCCGGCGCCGG
JMSF016I15+           TAACTTTTGCATGTCGATCACCGGGACATCTGTGGCAGAACAAGTTTTCTCCGGCGCCGG
JMSF039K11+           TAACTTTTGCATGTCGATCACCGGGACATCTGTGGCAGAACAAGTTTTCTCCGGCGCCGG
                      ____________________________________________________________
consensus             TAACTTTTGCATGTCGATCACCGGGACATCTGTGGCAGAACAAGTTTTCTCCGGCGCCGG
 
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JMSF045A17+           AGATTTGATATCCTGTAGTATATACCGACTTGGAACCACGGCGGGATTCTCCTTGGCCAG
JMSF016I15+           AGATTTGATATCCTGTAGTATATACCGACTTGGAACCACGGCGGGATTCTCCTTGGCCAG
JMSF039K11+           AGATTTGATATCCTGTAGTATATACCGACTTGGAACCACGGCGGGATTCTCCTTGGCCAG
                      ____________________________________________________________
consensus             AGATTTGATATCCTGTAGTATATACCGACTTGGAACCACGGCGGGATTCTCCTTGGCCAG
 
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JMSF045A17+           CTGCTGAACGCTAGGCACTGGGTGAGAGACACCTTCAGCTTCCATGGCGGCCATAGATGC
JMSF016I15+           CTGCTGAACGCTAGGCACTGGGTGAGAGACACCTTCAGCTTCCATGGCGGCCATAGATGC
JMSF039K11+           CTGCTGAACGCTAGGCACTGGGTGAGAGACACCTTCAGCTTCCATGGCGGCCATAGATGC
                      ____________________________________________________________
consensus             CTGCTGAACGCTAGGCACTGGGTGAGAGACACCTTCAGCTTCCATGGCGGCCATAGATGC
 
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JMSF045A17+           CCTCGATCGTCTTACACTACACAGTACAGAAACTAATTTGATGTTTTATTGCTTTTC   
JMSF016I15+           CCTCGATCGTCTTACACTACACAGTACAGAAACTAATTTGATGTTTTATTGCTTTTC   
JMSF039K11+           CCTCGATCGTCTTACACTACACAGTACAGAAACTAATTTGATGTTTTATTGCTTTTCGTC
                      ____________________________________________________________
consensus             CCTCGATCGTCTTACACTACACAGTACAGAAACTAATTTGATGTTTTATTGCTTTTCGTC