Contig 003810:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF039C12Sequence583003810 (2)ref|XP_009760591.1|9e-09PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Nicotiana sylvestris851004407 (3)ref|XP_009589146.1|8e-68PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Nicotiana tomentosif
JMSF050C04Sequence698003810 (2)ref|XP_009760592.1|2e-25PREDICTED: nucleolar complex protein 2 homolog isoform X2 [Nicotiana sylvestris712004407 (3)ref|XP_009589146.1|8e-39PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Nicotiana tomentosif

Alignment

This contig is upended


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JMSF050C04+                                                            TTGATGTAGGG
                      ____________________________________________________________
consensus                                                              TTGATGTAGGG
 
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JMSF050C04+           TCAGCATCACTATCATCACCATAATGACAAGCAGAACGAAATGCTCTCACAAGAGAGCGG
                      ____________________________________________________________
consensus             TCAGCATCACTATCATCACCATAATGACAAGCAGAACGAAATGCTCTCACAAGAGAGCGG
 
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JMSF050C04+           ATTGCCCCTATGTTTCTCTTTTCTCTAATCAAGTTACACCAAGAATCAACCATTTCACTA
                      ____________________________________________________________
consensus             ATTGCCCCTATGTTTCTCTTTTCTCTAATCAAGTTACACCAAGAATCAACCATTTCACTA
 
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JMSF050C04+           GTAACTACATTTTTAACGGACTTATTCCATTGTTCCCTAGAAGCCTGCTCCATCTCAAGC
                      ____________________________________________________________
consensus             GTAACTACATTTTTAACGGACTTATTCCATTGTTCCCTAGAAGCCTGCTCCATCTCAAGC
 
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JMSF050C04+           TCATCAGTTTCCTTCTCATCTTCCATTGCCTCATCATCGAGTTCAATTTCTTCATCATCA
JMSF039C12+                            ATCTTCCATTGCCTCATCATCGAGTTCAATTTCTTCATCATCA
                      ____________________________________________________________
consensus             TCATCAGTTTCCTTCTCATCTTCCATTGCCTCATCATCGAGTTCAATTTCTTCATCATCA
 
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JMSF050C04+           TCAATTTCCTCATCATTAAATTCAAGAAGCTCCTTGTCATGCTCTTTCAAGAATTCAAAG
JMSF039C12+           TCAATTTCCTCATCATTAAATTCAAGAAGCTCCTTGTCATGCTCTTTCAAGAATTCAAAG
                      ____________________________________________________________
consensus             TCAATTTCCTCATCATTAAATTCAAGAAGCTCCTTGTCATGCTCTTTCAAGAATTCAAAG
 
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JMSF050C04+           AACTCCGGATCCTTTTCTTGGAGTCTCTCCAACTGTTCCATATGCTCTCTAGCCGTTTTC
JMSF039C12+           AACTCCGGATCCTTTTCTTGGAGTCTCTCCAACTGTTCCATATGCTCTCTAGCCGTTTTC
                      ____________________________________________________________
consensus             AACTCCGGATCCTTTTCTTGGAGTCTCTCCAACTGTTCCATATGCTCTCTAGCCGTTTTC
 
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JMSF050C04+           TTTGATGTTGAGTCTGGCATAGTGTCAGTTTGGTTGTCTTCACCCTTGGGTTCCTTTTTA
JMSF039C12+           TTTGATGTTGAGTCTGGCATAGTGTCAGTTTGGTTGTCTTCACCCTTGGGTTCCTTTTTA
                      ____________________________________________________________
consensus             TTTGATGTTGAGTCTGGCATAGTGTCAGTTTGGTTGTCTTCACCCTTGGGTTCCTTTTTA
 
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JMSF050C04+           CTTGATAGTTTAACTTTTCTCCTTGAACCCATTGAGGAAGAGATGGAAAGTGGGCGTCCT
JMSF039C12+           CTTGATAGTTTAACTTTTCTCCTTGAACCCATTGAGGAAGAGATGGAAAGTGGGCGTCCT
                      ____________________________________________________________
consensus             CTTGATAGTTTAACTTTTCTCCTTGAACCCATTGAGGAAGAGATGGAAAGTGGGCGTCCT
 
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JMSF050C04+           TTTTCTTCAGCCAAACCAGGAAAATCCTAAGGCCCT                        
JMSF039C12+           TTTTCTTCAGCCAAACCAGGAAAATCCTAAGGCCCTAAGTGGTTTTGTAGGAATTCAAGT
                      ____________________________________________________________
consensus             TTTTCTTCAGCCAAACCAGGAAAATCCTAAGGCCCTAAGTGGTTTTGTAGGAATTCAAGT
 
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JMSF039C12+           TTACACAACAAAAACCGACAGAATCGTATGTTTTACGGTTTCTTGATCCACACAAGGAAG
                      ____________________________________________________________
consensus             TTACACAACAAAAACCGACAGAATCGTATGTTTTACGGTTTCTTGATCCACACAAGGAAG
 
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JMSF039C12+           TGAGGAACTCCGTTCAGAGACAGTTTCCGAGCTTCTCTAAGATATTGAGGAAAGTGGAGT
                      ____________________________________________________________
consensus             TGAGGAACTCCGTTCAGAGACAGTTTCCGAGCTTCTCTAAGATATTGAGGAAAGTGGAGT
 
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JMSF039C12+           CACCAGCCGGAAGAAGCAGGAGCCAGTAACGTTGTTCCGGCAGACGTTGGCGAGAGAGAG
                      ____________________________________________________________
consensus             CACCAGCCGGAAGAAGCAGGAGCCAGTAACGTTGTTCCGGCAGACGTTGGCGAGAGAGAG
 
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JMSF039C12+           AGAGCTTTGGACGACTGTGTTGTGGCTCGCCCGTTCAAGCAGGGGAGCTGCAGCAGCATC
                      ____________________________________________________________
consensus             AGAGCTTTGGACGACTGTGTTGTGGCTCGCCCGTTCAAGCAGGGGAGCTGCAGCAGCATC