Contig 003808:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF009I11-                                     ATATCATCCTGAATTAAATTAAATTTCATATAT
                      ____________________________________________________________
consensus                                        ATATCATCCTGAATTAAATTAAATTTCATATAT
 
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rJMSF009I11-          TATATAGTAACCTCCCTGTTGAAAATCCAGCTGAACTTCACCCCACGCGGCGCCAACTTC
                      ____________________________________________________________
consensus             TATATAGTAACCTCCCTGTTGAAAATCCAGCTGAACTTCACCCCACGCGGCGCCAACTTC
 
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rJMSF009I11-          TTGGCTCTCTCGTCGGCTCGCTCTTGCAGCTTCCTAATCCTCAACGGCAGTCTACACACG
                      ____________________________________________________________
consensus             TTGGCTCTCTCGTCGGCTCGCTCTTGCAGCTTCCTAATCCTCAACGGCAGTCTACACACG
 
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rJMSF009I11-          AAGTCCTGTGCGCCTCTTCCATCCCCGTTCAATCCCTCCATCTTCTCCAGTTTCCACCGT
                      ____________________________________________________________
consensus             AAGTCCTGTGCGCCTCTTCCATCCCCGTTCAATCCCTCCATCTTCTCCAGTTTCCACCGT
 
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rJMSF009I11-          CCGATCAAAAACTCCAAGATATCCGCGTAGTCGTGAGCCGTGTAAACGCCGAGGCGCTGA
                      ____________________________________________________________
consensus             CCGATCAAAAACTCCAAGATATCCGCGTAGTCGTGAGCCGTGTAAACGCCGAGGCGCTGA
 
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rJMSF009I11-          GCCACCGCCGAGAAGTGCTCGAAGAGATTAATATCTTGGCCGTCGTACATGAGGTGAGCC
                      ____________________________________________________________
consensus             GCCACCGCCGAGAAGTGCTCGAAGAGATTAATATCTTGGCCGTCGTACATGAGGTGAGCC
 
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rJMSF009I11-          GGCATTGTGATCTTCTTCCTCATCATGTCGGCTATGGCGAGCATGGCGCCGTTGGGGTCC
                      ____________________________________________________________
consensus             GGCATTGTGATCTTCTTCCTCATCATGTCGGCTATGGCGAGCATGGCGCCGTTGGGGTCC
 
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rJMSF009I11-          ACTTCCAGCAGCTTCTCCACGATGTTCGCGTACGCGTTCTCGTGCCGCTTCTCGTCCGCC
                      ____________________________________________________________
consensus             ACTTCCAGCAGCTTCTCCACGATGTTCGCGTACGCGTTCTCGTGCCGCTTCTCGTCCGCC
 
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rJMSF009I11-          GCAATGCTGCCGCAAATGCGCGCCAGCGCCAGATCGCCGCCCTCCTTGGCTAGCCGAGCC
                      ____________________________________________________________
consensus             GCAATGCTGCCGCAAATGCGCGCCAGCGCCAGATCGCCGCCCTCCTTGGCTAGCCGAGCC
 
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rJMSF009I11-          GTGTTGCCGTGCGACACGAATGTGGCTCGCTCTTGGAATGACGTGTATACGAATCCCAAA
JMFN028E23+                                            TGGAATGACGGGTATACGAATCCCAAA
                      ____________________________________________________________
consensus             GTGTTGCCGTGCGACACGAATGTGGCTCGCTCTTGGAATGACGTGTATACGAATCCCAAA
 
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rJMSF009I11-          TACGGGTTGTTTTCCGTGCCCGGATCCATTCCAACGCCAAGCAAGTACTGCACCGTTTTT
JMFN028E23+           TACGGGTTGTTTNCCGTGCCCGGATCCATTCCAACGCCAAGCAAGTACTGCACCGTTTTT
JMSF038N15+                        CCGTGCCCGGATCCATTCCAACGCCAAGCAAGTACTGCACCGTTTTT
                      ____________________________________________________________
consensus             TACGGGTTGTTTTCCGTGCCCGGATCCATTCCAACGCCAAGCAAGTACTGCACCGTTTTT
 
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rJMSF009I11-          TCGATCATGGTCATATCGACCCGACCCGAAAGGTAGAGGTAGGTCCGGAGCAAATCGCCG
JMFN028E23+           TCGATCATGGTCATATCGACCCGACCCGAAAGGTAGAGGTAGGTCCGGAGCAAATCGCCG
JMSF038N15+           TCGATCATGGTCATATCGACCCGACCCGAAAGGTAGAGGTAGGTCCGGAGCAAATCGCCG
                      ____________________________________________________________
consensus             TCGATCATGGTCATATCGACCCGACCCGAAAGGTAGAGGTAGGTCCGGAGCAAATCGCCG
 
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rJMSF009I11-          TGGCGGTTCTCCTCGGCGGTCCAGGCTCGAGTCCAAGCCGCCCAAGGA-TCTGGCTGGCG
JMFN028E23+           TGGCGGTTCTCCTCGGCGGTCCAGGCTCGAGTCCAAGCCGCCCAAGGATTCTGGCTGGCG
JMSF038N15+           TGGCGGTTCTCCTCGGCGGTCCAGGCTCGAGTCCAAGCCGCCCAAGGATTCTGGCTGGCG
                      ____________________________________________________________
consensus             TGGCGGTTCTCCTCGGCGGTCCAGGCTCGAGTCCAAGCCGCCCAAGGATTCTGGCTGGCG
 
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rJMSF009I11-          CCGGTCTCATCGCGCACCC                                         
JMFN028E23+           CCGGTCTCATCGCGCACCCCGTCAAGCGTGTTAATCATGGTCTGATAAGTCGGCAGCGCG
JMSF038N15+           CCGGTCTCATCGCGCACCCCGTCAAGCGTGTTAATCATGGTCTGATAAGTCGGCAGCGCG
                      ____________________________________________________________
consensus             CCGGTCTCATCGCGCACCCCGTCAAGCGTGTTAATCATGGTCTGATAAGTCGGCAGCGCG
 
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JMFN028E23+           TCCTCGGTGATCATATCGCCGACCAGAACCACAAAGTAATCGTCCGGAAGGCCGGAGTTC
JMSF038N15+           TCCTCGGTGATCATATCGCCGACCAGAACCACAAAGTAATCGTCCGGAAGGCCGGAGTTC
                      ____________________________________________________________
consensus             TCCTCGGTGATCATATCGCCGACCAGAACCACAAAGTAATCGTCCGGAAGGCCGGAGTTC
 
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JMFN028E23+           CGTTCCCGGAGCGCCCGAACCTCATCGAAGAACTCGTCGGAGGGACGGGACGGGTCGGGG
JMSF009I11+                                              GTCGGAGGGACGGGACGGGTCGGGG
JMSF038N15+           CGTTCCCGGAGCGCCCGAACCTCATCGAAGAACTCGTCGGAGGGACGGGACGGGTCGGGG
                      ____________________________________________________________
consensus             CGTTCCCGGAGCGCCCGAACCTCATCGAAGAACTCGTCGGAGGGACGGGACGGGTCGGGG
 
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JMFN028E23+           AGGAACTCGTTGGGCTGCCAGCATTTCTCCACCGGCTTCAGGAGAGGGAGGACCGAGTTC
JMSF009I11+           AGGAACTCGTTGGGCTGCCAGCATTTCTCCACCGGCTTCAGGAGAGGGAGGACCGAGTTC
JMSF038N15+           AGGAACTCGTTGGGCTGCCAGCATTTCTCCACCGGCTTCAGGAGAGGGAGGACCGAGTTC
                      ____________________________________________________________
consensus             AGGAACTCGTTGGGCTGCCAGCATTTCTCCACCGGCTTCAGGAGAGGGAGGACCGAGTTC
 
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JMFN028E23+           GACGCCCAGGACTATAGCGACTTGAAAATCTCGACTTTTTCGGGGGGCATCGAGTGCGTC
JMSF009I11+           GACGCCCAGGACTCTAGCGACTTGAAAATCTCGACTTTTTCGGGGGGCATCGAGTGCGTC
JMSF038N15+           GACGCCCAGGACTCTAGCGACTTGAAAATCTCGACTTTTTCGGGGGGCATCGAGTGCGTC
                      ____________________________________________________________
consensus             GACGCCCAGGACTCTAGCGACTTGAAAATCTCGACTTTTTCGGGGGGCATCGAGTGCGTC
 
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JMFN028E23+           GTCTGGTAACGGAGCGGCTGCGGCGGGGCGGCAATGGCTGAGATCGGCGCTACACGGCGG
JMSF009I11+           GTCTGGTAACGGAGCGGCTGCGGCGGGGCGGCAATGGCTGAGATCGGCGCTACACGGCGG
JMSF038N15+           GTCTGGTAACGGAGCGGCTGCGGCGGGGCGGCAATGGCTGAGATCGGCGCTACACGGCGG
                      ____________________________________________________________
consensus             GTCTGGTAACGGAGCGGCTGCGGCGGGGCGGCAATGGCTGAGATCGGCGCTACACGGCGG
 
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JMFN028E23+           TGGAGGGCGGCCGGAAAGGCAGATGGAGAGCATGCAAGTGTGTTGGCGGTGGCGGAGAAT
JMSF009I11+           TGGAGGGCGGCCGGAAAGGCAGATGGAGAGCATGCAAGTGTGTTGGCGGTGGCGGAGAAT
JMSF038N15+           TGGAGGGCGGCCGGAAAGGCAGATGGAGAGCATGCAAGTGTGTTGGCGGTGGCGGAGAAT
                      ____________________________________________________________
consensus             TGGAGGGCGGCCGGAAAGGCAGATGGAGAGCATGCAAGTGTGTTGGCGGTGGCGGAGAAT
 
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JMFN028E23+           ACTAAGAATTGCTGC                                             
JMSF009I11+           ACTAAGAATTGCTGCATGCTTACAATCAGGAAGAAAAGCCAAA                 
JMSF038N15+           ACTAAGAATTGCTGCATGCTTACAATCAGGAAGAAAAGTCAAAACGTCTGGGTTGCAATC
                      ____________________________________________________________
consensus             ACTAAGAATTGCTGCATGCTTACAATCAGGAAGAAAAGTCAAAACGTCTGGGTTGCAATC